Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000091

Physical Location & Seq

Genomic Coordinates Reverse (-)

35025604 .. 35028378

Gene Structure 2775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCTTTCTATAACAAGGTTGGGAGCCTTTTGAGACAAGGCATTTCCCAGAATGGACAAGCACCAATGTCATCTATGTTTAATTCTGCTCGTTACATGTCCTCCAAGCTTTTTGTTGGAGGTCTTTCGTTTTCCACTGATGACTCTTCTCTCAAAGATGCTTTTTCCGGCTTTGGTGATGTGACTGATGCAAAGGTCATCATGGATAGAGATACTGGGAGGTCGCGGGGATTTGGATTTGTTAACTTTGCCAGCGAAGATGCTGCCAATTCAGCCCTCACCGCTATGGATGGCCAGGAGTTAAATGGGCGAAGCATTCGTGTGAGTGTCGCTAACGAACGAACTGGTCCTCGACCATCATTTAATGGTGGTTACCGTGGGGGTGACAGTGGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

132

Amino Acids

14.04

Weight (kDa)

8.06

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	37 - 107	6.4e-24	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica	MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica	Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis	pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis	RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata	RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora	Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii	Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa	Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha	Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana	Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	226
AciI	CCGC	2 cut(s)	226, 282
AcoI	YGGCCR	1 cut(s)	292
AflIII	ACRYGT	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	188, 271, 395
AvaII	GGWCC	1 cut(s)	347
BalI	TGGCCA	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	2 cut(s)	284, 364
BcgI	CGANNNNNNTGC	2 cut(s)	245, 279
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	3 cut(s)	148, 178, 250
BmuI	ACTGGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	376
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bse1I	ACTGG	2 cut(s)	220, 349
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	295
BseNI	ACTGG	2 cut(s)	220, 349
BseXI	GCAGC	1 cut(s)	250
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	294
BspACI	CCGC	2 cut(s)	226, 282
BspANI	GGCC	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	220, 349
BssECI	CCNNGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	2 cut(s)	377, 389
Bst6I	CTCTTC	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	376
BstEII	GGTNACC	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	294
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	135, 394
Cac8I	GCNNGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	347
CviAII	CATG	2 cut(s)	97, 202
CviJI	RGCY	7 cut(s)	5, 27, 109, 171, 275, 294, 393
CviKI_1	RGCY	7 cut(s)	5, 27, 109, 171, 275, 294, 393
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	294
FaeI	CATG	2 cut(s)	100, 205
FaiI	YATR	5 cut(s)	12, 77, 98, 203, 287
FatI	CATG	2 cut(s)	96, 201
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	264
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	2 cut(s)	100, 205
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	143
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	188, 271, 395
Hpy166II	GTNNAC	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4III	ACNGT	2 cut(s)	377, 389
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
Hsp92II	CATG	2 cut(s)	100, 205
KspAI	GTTAAC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	7 cut(s)	62, 181, 201, 265, 281, 308, 330
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	3 cut(s)	148, 178, 250
MaeIII	GTNAC	4 cut(s)	92, 181, 371, 383
MboII	GAAGA	2 cut(s)	138, 269
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	2 cut(s)	82, 268
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	112, 113, 213, 287, 360
Mox20I	TGGCCA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	5 cut(s)	81, 243, 302, 363, 397
MslI	CAYNNNNRTG	2 cut(s)	284, 320
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	296
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NlaIII	CATG	2 cut(s)	100, 205
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	2 cut(s)	181, 383
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PctI	GAATGC	1 cut(s)	315
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PscI	ACATGT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	1 cut(s)	347
RseI	CAYNNNNRTG	2 cut(s)	284, 320
SaqAI	TTAA	5 cut(s)	81, 243, 302, 363, 397
SatI	GCNGC	1 cut(s)	264
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	5 cut(s)	21, 111, 124, 198, 224
SfaNI	GCATC	3 cut(s)	148, 178, 250
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	284, 320
Sse9I	AATT	2 cut(s)	82, 268
SsiI	CCGC	2 cut(s)	226, 282
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	377, 389
TaqI	TCGA	1 cut(s)	352
TasI	AATT	2 cut(s)	82, 268
Tru1I	TTAA	5 cut(s)	81, 243, 302, 363, 397
Tru9I	TTAA	5 cut(s)	81, 243, 302, 363, 397
TscAI	CASTG	2 cut(s)	142, 394
TseFI	GTSAC	2 cut(s)	181, 383
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	2 cut(s)	181, 383
TspRI	CASTG	2 cut(s)	142, 394
VpaK11BI	GGWCC	1 cut(s)	347
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.