Rmu_sc0008373.1_g000009

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008373.1
OG0000091
Physical Location & Seq
Forward (+)
34234 .. 34644
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008373.1_g000009.1.cds

Sequence Viewer

Length: 411 bp
atgccgacaatctcatccccaagatttctccacaagcagttaattaagtgtgctgaaatcatagaaggggatggaggcgtaggaaccatcaagaagatcaccttcggtgaaggcagccagttcggctctgtgacacacaagatcgatgggattgacaaagacaactttgtctacagctacagtttggtcgaaggagatgccttgtccgacaagattgagaagatctcttacgagaccaagttggtggcatcttccgatggaggatcaatcatcaagagcaccagtaactaccacaccaaaggtgaagtggagatcaaggaagagcatgtcaaggctggaaaagagaaggcgtcccacctcttcaagcttgttgaaggctacctcttggccaatcctaatgaatactgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

136

Amino Acids

14.89

Weight (kDa)

5.95

Isoelectric Point (pI)

22.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccI GTMKAC 1 cut(s) 171
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 350
AgsI TTSAA 2 cut(s) 364, 374
AluBI AGCT 2 cut(s) 177, 367
AluI AGCT 2 cut(s) 177, 367
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 271
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 91, 119, 314
BalI TGGCCA 1 cut(s) 389
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 126
BccI CCATC 4 cut(s) 65, 95, 140, 251
BcgI CGANNNNNNTGC 4 cut(s) 103, 137, 179, 213
BcoDI GTCTC 1 cut(s) 227
BfmI CTRYAG 2 cut(s) 172, 178
BglI GCCNNNNNGGC 1 cut(s) 123
BglII AGATCT 1 cut(s) 222
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 2 cut(s) 187, 257
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bsa29I ATCGAT 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 118, 282
BseCI ATCGAT 1 cut(s) 144
BseGI GGATG 2 cut(s) 14, 76
BseNI ACTGG 2 cut(s) 118, 282
BseXI GCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 389
BshVI ATCGAT 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 337
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 1 cut(s) 389
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 5 cut(s) 96, 141, 222, 263, 312
BspANI GGCC 1 cut(s) 389
BspDI ATCGAT 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 271
BspQI GCTCTTC 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 227
BsrI ACTGG 2 cut(s) 118, 282
BssMI GATC 5 cut(s) 96, 141, 222, 263, 312
BssNI GRCGYC 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 182, 407
Bst6I CTCTTC 2 cut(s) 315, 365
BstACI GRCGYC 1 cut(s) 350
BstF5I GGATG 2 cut(s) 14, 76
BstKTI GATC 5 cut(s) 99, 144, 225, 266, 315
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 5 cut(s) 96, 141, 222, 263, 312
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNSI RCATGY 1 cut(s) 329
BstSFI CTRYAG 2 cut(s) 172, 178
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 144
BsuRI GGCC 1 cut(s) 389
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 2 cut(s) 14, 76
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 339
CviAII CATG 1 cut(s) 326
CviJI RGCY 7 cut(s) 117, 126, 177, 335, 367, 378, 389
CviKI_1 RGCY 7 cut(s) 117, 126, 177, 335, 367, 378, 389
DpnI GATC 5 cut(s) 98, 143, 224, 265, 314
DpnII GATC 5 cut(s) 96, 141, 222, 263, 312
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 315, 365
EarI CTCTTC 2 cut(s) 315, 365
Eco31I GGTCTC 1 cut(s) 227
FaeI CATG 1 cut(s) 329
FaiI YATR 2 cut(s) 62, 327
FalI AAGNNNNNCTT 2 cut(s) 86, 118
FaqI GGGAC 1 cut(s) 337
FatI CATG 1 cut(s) 325
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 389
HgaI GACGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 329
HindIII AAGCTT 1 cut(s) 365
HphI GGTGA 3 cut(s) 91, 119, 314
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 2 cut(s) 208, 256
Hpy188III TCNNGA 2 cut(s) 91, 274
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 6 cut(s) 59, 104, 112, 185, 340, 368
HpyCH4III ACNGT 2 cut(s) 182, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 329
Kzo9I GATC 5 cut(s) 96, 141, 222, 263, 312
LguI GCTCTTC 1 cut(s) 315
LpnPI CCDG 3 cut(s) 131, 295, 321
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 187, 257
MaeIII GTNAC 2 cut(s) 130, 284
MalI GATC 5 cut(s) 98, 143, 224, 265, 314
MboI GATC 5 cut(s) 96, 141, 222, 263, 312
MboII GAAGA 5 cut(s) 106, 232, 243, 332, 352
MflI RGATCY 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 281
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 1 cut(s) 42
MluNI TGGCCA 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 4 cut(s) 68, 254, 368, 392
Mox20I TGGCCA 1 cut(s) 389
MscI TGGCCA 1 cut(s) 389
MseI TTAA 3 cut(s) 41, 45, 409
Msp20I TGGCCA 1 cut(s) 389
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 5 cut(s) 96, 141, 222, 263, 312
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 130
NspI RCATGY 1 cut(s) 329
PacI TTAATTAA 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 315
PkrI GCNGC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 222
SapI GCTCTTC 1 cut(s) 315
SaqAI TTAA 3 cut(s) 41, 45, 409
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 5 cut(s) 96, 141, 222, 263, 312
SduI GDGCHC 1 cut(s) 281
SetI ASST 6 cut(s) 104, 179, 304, 360, 369, 384
SfaNI GCATC 2 cut(s) 187, 257
SfcI CTRYAG 2 cut(s) 172, 178
Sse9I AATT 1 cut(s) 42
TaaI ACNGT 2 cut(s) 182, 407
TaqI TCGA 2 cut(s) 144, 189
TasI AATT 1 cut(s) 42
Tru1I TTAA 3 cut(s) 41, 45, 409
Tru9I TTAA 3 cut(s) 41, 45, 409
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 130
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.