Rh4CG265000

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000091
Physical Location & Seq
Reverse (-)
51928607 .. 51929089
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG265000.1

Sequence Viewer

Length: 483 bp
ATGGGTGTTTTCACTTACGAAACCGAGTTCACCTCGGTCATCCCACCACCAAGGTTGTTCAAGGCCTTTGTTCTTGATGCCGATAACCTTGTCCCTAAGATTGCTCCACAAGCAGTTAAGAGCGCTGAAGTCATTGAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATCCACCTTGGTGAAGGAAGCGAATACAGCTATGTGAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTGTACAACTACAGTATCATTGAAGGTGATGCTATCGGAGACAAAGTTGAGAAAATCTCATACGAGATTAAGTTGGTCGCATCTGCTGATGGAGGTTCCATCATCAAGAGCACCAGCCACTACCATTGTAAAGGTGAGGTTGAGATTAAGGAAGAGCATGTCAAGGCCGGAAAAGAAAGAGCCGCTGGATTGTTCAAGATTATTGAGCTCTACCTTTTGGGCAATCCTGATGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

160

Amino Acids

17.52

Weight (kDa)

5.23

Isoelectric Point (pI)

19.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 153 2.3e-22 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 423
AclWI GGATC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 245
AfeI AGCGCT 1 cut(s) 124
AgsI TTSAA 4 cut(s) 61, 137, 263, 436
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 2 cut(s) 198, 448
AluI AGCT 2 cut(s) 198, 448
Alw21I GWGCWC 2 cut(s) 353, 450
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 163
Aor51HI AGCGCT 1 cut(s) 124
AoxI GGCC 2 cut(s) 63, 405
AspLEI GCGC 1 cut(s) 125
AsuHPI GGTGA 5 cut(s) 22, 152, 191, 278, 386
BaeI ACNNNNGTAYC 2 cut(s) 238, 271
BanII GRGCYC 1 cut(s) 450
Bbv12I GWGCWC 2 cut(s) 353, 450
BccI CCATC 5 cut(s) 137, 167, 212, 323, 347
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 250
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 5 cut(s) 67, 217, 259, 329, 460
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaJI CCNNGG 3 cut(s) 33, 50, 175
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
BseDI CCNNGG 3 cut(s) 33, 50, 175
BseGI GGATG 1 cut(s) 39
BshFI GGCC 2 cut(s) 65, 407
BsiHKAI GWGCWC 2 cut(s) 353, 450
BsiSI CCGG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 65, 407
Bsp1286I GDGCHC 2 cut(s) 353, 450
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 1 cut(s) 423
BspANI GGCC 2 cut(s) 65, 407
BspLI GGNNCC 2 cut(s) 157, 337
BspPI GGATC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 387
BsrGI TGTACA 1 cut(s) 243
BssECI CCNNGG 3 cut(s) 33, 50, 175
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 2 cut(s) 50, 175
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 1 cut(s) 168
BstMWI GCNNNNNNNGC 2 cut(s) 110, 195
BstNSI RCATGY 1 cut(s) 401
BstSFI CTRYAG 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 2 cut(s) 65, 407
BtsCI GGATG 1 cut(s) 39
CfoI GCGC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 4 cut(s) 36, 71, 347, 382
CviAII CATG 1 cut(s) 398
CviJI RGCY 6 cut(s) 65, 198, 357, 407, 422, 448
CviKI_1 RGCY 6 cut(s) 65, 198, 357, 407, 422, 448
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 448
Eco130I CCWWGG 2 cut(s) 50, 175
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 450
Eco47III AGCGCT 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 50, 175
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 50, 175
FaeI CATG 1 cut(s) 401
FaiI YATR 3 cut(s) 201, 301, 399
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 1 cut(s) 423
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 2 cut(s) 65, 407
HapII CCGG 1 cut(s) 408
HhaI GCGC 1 cut(s) 125
Hin1II CATG 1 cut(s) 401
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HpaII CCGG 1 cut(s) 408
HphI GGTGA 5 cut(s) 22, 152, 191, 278, 386
Hpy166II GTNNAC 2 cut(s) 30, 244
Hpy188I TCNGA 2 cut(s) 213, 278
Hpy188III TCNNGA 5 cut(s) 74, 163, 346, 436, 467
Hpy8I GTNNAC 2 cut(s) 30, 244
HpyAV CCTTC 3 cut(s) 131, 176, 257
HpyCH4III ACNGT 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 195
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 1 cut(s) 401
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 367, 411, 421
LweI GCATC 5 cut(s) 67, 217, 259, 329, 460
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 2 cut(s) 178, 404
MflI RGATCY 1 cut(s) 168
MhlI GDGCHC 2 cut(s) 353, 450
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 4 cut(s) 43, 140, 326, 370
MseI TTAA 3 cut(s) 117, 309, 387
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 110, 195
NdeII GATC 1 cut(s) 168
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 2 cut(s) 157, 337
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 177
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 387
PkrI GCNGC 1 cut(s) 424
Psp124BI GAGCTC 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 157, 337
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 177
SacI GAGCTC 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 117, 309, 387
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 1 cut(s) 168
SduI GDGCHC 2 cut(s) 353, 450
SfaNI GCATC 5 cut(s) 67, 217, 259, 329, 460
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 1 cut(s) 423
SstI GAGCTC 1 cut(s) 450
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 2 cut(s) 50, 175
TaaI ACNGT 1 cut(s) 254
TaqII GACCGA 1 cut(s) 25
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 117, 309, 387
Tru9I TTAA 3 cut(s) 117, 309, 387
XceI RCATGY 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.