FvH4_4g19000

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000091
Physical Location & Seq
Reverse (-)
22758408 .. 22759459
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19000.t1

Sequence Viewer

Length: 486 bp
ATGGGTGTGTTCACTTACGAAACTGAGTTCACCTCCGTCATCCCACGAGCTAGATTGTTCAAGGCTTTCATCCTTGATGTGGACAATCTCATCCCGAAGATTGCACCCCAAGCAATCCAAGGTACTGAAATCCTTCAAGGTGATGGAGGGCCTGGAACCATCAAGAAAGTTACCTTTGGGGAAGGCAGTAAATTTGGATCTGTAACGCACAAGATCGATGGGATTGACAAAGATAAGTTCCAGTACAATTACAGTTTGATCGAAGGAGATGTGTTAGCTGAACACAAGATTGAGAAAGTCTCTTACGAGACCAAATTGGTGGAGTCTGCTGAGGGAGGATCCATTGTTAAGAGCATCAGTAACTACTACACCATTGGTGATATTGAGATCCAAGAAGAGCATGTTAAGGCTGGAAAAGAGAAGGCGTCTCAGCTCTTCAAGCTGGTCGAAGGCTACCTCTTGGCCAATCCCGACGACTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

162

Amino Acids

17.8

Weight (kDa)

5.01

Isoelectric Point (pI)

23.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 156 5.4e-22 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 205, 333, 346, 382
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 2 cut(s) 124, 245
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 61, 137, 439
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 4 cut(s) 50, 278, 433, 442
AluI AGCT 4 cut(s) 50, 278, 433, 442
Alw26I GTCTC 3 cut(s) 302, 304, 432
AlwI GGATC 4 cut(s) 205, 333, 346, 382
AoxI GGCC 2 cut(s) 149, 462
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 3 cut(s) 22, 152, 389
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 1 cut(s) 338
BauI CACGAG 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 330
BccI CCATC 3 cut(s) 137, 167, 212
BciT130I CCWGG 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 302, 304, 432
BfaI CTAG 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 157, 340
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 363
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 284, 316
Bpu10I CCTNAGC 1 cut(s) 330
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 39, 69, 90
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 3 cut(s) 15, 321, 443
BseNI ACTGG 1 cut(s) 241
BshFI GGCC 2 cut(s) 151, 464
BshVI ATCGAT 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 3 cut(s) 302, 304, 432
BsmBI CGTCTC 1 cut(s) 432
BsnI GGCC 2 cut(s) 151, 464
Bso31I GGTCTC 1 cut(s) 302
Bsp143I GATC 5 cut(s) 197, 213, 258, 338, 387
BspANI GGCC 2 cut(s) 151, 464
BspCNI CTCAG 3 cut(s) 16, 322, 442
BspDI ATCGAT 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 157, 340
BspPI GGATC 4 cut(s) 205, 333, 346, 382
BspQI GCTCTTC 2 cut(s) 390, 440
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 5 cut(s) 197, 213, 258, 338, 387
BssNI GRCGYC 1 cut(s) 425
BssSI CACGAG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 118
Bst2BI CACGAG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 2 cut(s) 390, 440
BstACI GRCGYC 1 cut(s) 425
BstDEI CTNAG 3 cut(s) 24, 330, 429
BstF5I GGATG 3 cut(s) 39, 69, 90
BstKTI GATC 5 cut(s) 200, 216, 261, 341, 390
BstMAI GTCTC 3 cut(s) 302, 304, 432
BstMBI GATC 5 cut(s) 197, 213, 258, 338, 387
BstMWI GCNNNNNNNGC 2 cut(s) 110, 439
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 1 cut(s) 151
BstX2I RGATCY 3 cut(s) 197, 338, 387
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 3 cut(s) 197, 338, 387
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 2 cut(s) 151, 464
BsuTUI ATCGAT 1 cut(s) 216
BtsCI GGATG 3 cut(s) 39, 69, 90
Cfr13I GGNCC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 1 cut(s) 414
Csp6I GTAC 2 cut(s) 123, 244
CviAII CATG 1 cut(s) 401
CviJI RGCY 9 cut(s) 50, 65, 151, 278, 410, 433, 442, 453, 464
CviKI_1 RGCY 9 cut(s) 50, 65, 151, 278, 410, 433, 442, 453, 464
CviQI GTAC 2 cut(s) 123, 244
DdeI CTNAG 3 cut(s) 24, 330, 429
DpnI GATC 5 cut(s) 199, 215, 260, 340, 389
DpnII GATC 5 cut(s) 197, 213, 258, 338, 387
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 390, 440
EarI CTCTTC 2 cut(s) 390, 440
Eco130I CCWWGG 1 cut(s) 118
Eco31I GGTCTC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 118
ErhI CCWWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 1 cut(s) 404
FaiI YATR 1 cut(s) 402
FatI CATG 1 cut(s) 400
FokI GGATG 3 cut(s) 26, 56, 77
FspBI CTAG 1 cut(s) 51
HaeIII GGCC 2 cut(s) 151, 464
HgaI GACGC 1 cut(s) 414
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 1 cut(s) 404
HinfI GANTC 1 cut(s) 323
HphI GGTGA 3 cut(s) 22, 152, 389
Hpy166II GTNNAC 3 cut(s) 12, 30, 82
Hpy188III TCNNGA 3 cut(s) 94, 163, 470
Hpy8I GTNNAC 3 cut(s) 12, 30, 82
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 5 cut(s) 143, 176, 257, 415, 443
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 439
HpyF3I CTNAG 3 cut(s) 24, 330, 429
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 1 cut(s) 404
Kzo9I GATC 5 cut(s) 197, 213, 258, 338, 387
LguI GCTCTTC 2 cut(s) 390, 440
LpnPI CCDG 5 cut(s) 138, 165, 254, 396, 428
LweI GCATC 1 cut(s) 363
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 169, 202, 359
MalI GATC 5 cut(s) 199, 215, 260, 340, 389
MboI GATC 5 cut(s) 197, 213, 258, 338, 387
MboII GAAGA 3 cut(s) 109, 407, 427
MflI RGATCY 3 cut(s) 197, 338, 387
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 3 cut(s) 191, 247, 314
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 5 cut(s) 43, 140, 325, 329, 467
Mox20I TGGCCA 1 cut(s) 464
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 464
MseI TTAA 2 cut(s) 348, 405
Msp20I TGGCCA 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 110, 439
NdeII GATC 5 cut(s) 197, 213, 258, 338, 387
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 2 cut(s) 157, 340
NspI RCATGY 1 cut(s) 404
PciSI GCTCTTC 2 cut(s) 390, 440
PdmI GAANNNNTTC 1 cut(s) 132
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 157, 340
PspPI GGNCC 1 cut(s) 149
PsuI RGATCY 3 cut(s) 197, 338, 387
RsaI GTAC 2 cut(s) 124, 245
RsaNI GTAC 2 cut(s) 123, 244
SapI GCTCTTC 2 cut(s) 390, 440
SaqAI TTAA 2 cut(s) 348, 405
Sau3AI GATC 5 cut(s) 197, 213, 258, 338, 387
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 153
SetI ASST 9 cut(s) 35, 52, 124, 142, 176, 280, 435, 444, 459
SfaNI GCATC 1 cut(s) 363
Sse9I AATT 3 cut(s) 191, 247, 314
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 151
StyI CCWWGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 3 cut(s) 216, 261, 447
TasI AATT 3 cut(s) 191, 247, 314
TatI WGTACW 1 cut(s) 243
Tru1I TTAA 2 cut(s) 348, 405
Tru9I TTAA 2 cut(s) 348, 405
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 25
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.