RchiOBHm_Chr4g0423901

Major allergen Pru

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
49489216 .. 49490078
863 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39323

Sequence Viewer

Length: 480 bp
ATGGGTGTGTTCACATACGAAACCGAGTTCACCTCAGTCATCCCACCACCTAAGTTGTTCAAGGCTTTCGTCCTTGATGCCGACAACCTCATCCCCAAGATTGCCCCTCAGGCTGTGAAGAGTGCCGAAATCGTTGAAGGAGATGGAGGTGTTGGAACCATCAAGAAGATCCACCTTGGTGAAGGAAGTGAATACAGCTATGTGAAGCACAAGATCGACGGAATCGACAAAGACAACTTTGTGTACAACTACAGCATCATTGAAGGAGATGCTATCGGAGACAAGATTGAGAAGATCTCCTATGAGATTAAGTTGGTGGCATCCAGCGGAGGTTCCATAATCAAGAGCACCAGTCACTACCACACCAAGGGTGAGGTCGATATCAAGGAAGATCATGTTAAGGCCGGAAAAGATAGAGCCGCTGGTCTGTTCAAGATCATTGAGAACCATCTCTTGGCCCATCCCGAGGAATACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.46

Weight (kDa)

5.62

Isoelectric Point (pI)

20.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 154 4.4e-25 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 454
AciI CCGC 2 cut(s) 327, 420
AclWI GGATC 1 cut(s) 163
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 367, 454, 466
AgsI TTSAA 4 cut(s) 61, 137, 263, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 350
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 163
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 402, 456
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 3 cut(s) 22, 191, 383
AvaI CYCGRG 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 350
BccI CCATC 4 cut(s) 137, 167, 456, 468
BcoDI GTCTC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 2 cut(s) 157, 334
BmsI GCATC 4 cut(s) 67, 259, 264, 329
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaJI CCNNGG 3 cut(s) 175, 366, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 454, 466
Bse1I ACTGG 1 cut(s) 351
Bse21I CCTNAGG 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 175, 366, 465
BseGI GGATG 4 cut(s) 39, 90, 320, 460
BseLI CCNNNNNNNGG 3 cut(s) 367, 454, 466
BseMII CTCAG 2 cut(s) 48, 122
BseNI ACTGG 1 cut(s) 351
BshFI GGCC 2 cut(s) 404, 458
BsiHKAI GWGCWC 1 cut(s) 350
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 3 cut(s) 367, 454, 466
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 2 cut(s) 404, 458
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 5 cut(s) 168, 213, 294, 391, 435
BspACI CCGC 2 cut(s) 327, 420
BspANI GGCC 2 cut(s) 404, 458
BspCNI CTCAG 2 cut(s) 47, 121
BspLI GGNNCC 2 cut(s) 157, 334
BspPI GGATC 1 cut(s) 163
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 1 cut(s) 351
BssECI CCNNGG 3 cut(s) 175, 366, 465
BssMI GATC 5 cut(s) 168, 213, 294, 391, 435
BssT1I CCWWGG 2 cut(s) 175, 366
Bst6I CTCTTC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 34, 51, 108
BstF5I GGATG 4 cut(s) 39, 90, 320, 460
BstKTI GATC 5 cut(s) 171, 216, 297, 394, 438
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 5 cut(s) 168, 213, 294, 391, 435
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 168, 294
BstYI RGATCY 2 cut(s) 168, 294
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 404, 458
BtsCI GGATG 4 cut(s) 39, 90, 320, 460
Cfr13I GGNCC 1 cut(s) 457
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 395
CviJI RGCY 6 cut(s) 65, 113, 198, 404, 419, 458
CviKI_1 RGCY 6 cut(s) 65, 113, 198, 404, 419, 458
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 34, 51, 108
DpnI GATC 5 cut(s) 170, 215, 296, 393, 437
DpnII GATC 5 cut(s) 168, 213, 294, 391, 435
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 175, 366
Eco32I GATATC 1 cut(s) 382
Eco81I CCTNAGG 1 cut(s) 108
Eco88I CYCGRG 1 cut(s) 464
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 175, 366
ErhI CCWWGG 2 cut(s) 175, 366
FaeI CATG 1 cut(s) 398
FaiI YATR 5 cut(s) 16, 201, 303, 338, 396
FatI CATG 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 4 cut(s) 26, 77, 307, 447
Fsp4HI GCNGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 420
HaeIII GGCC 2 cut(s) 404, 458
HapII CCGG 1 cut(s) 405
Hin1II CATG 1 cut(s) 398
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 405
HphI GGTGA 3 cut(s) 22, 191, 383
Hpy166II GTNNAC 3 cut(s) 12, 30, 244
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 4 cut(s) 163, 343, 433, 464
Hpy8I GTNNAC 3 cut(s) 12, 30, 244
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 131, 176, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 3 cut(s) 34, 51, 108
Hsp92II CATG 1 cut(s) 398
Kzo9I GATC 5 cut(s) 168, 213, 294, 391, 435
LpnPI CCDG 5 cut(s) 95, 337, 364, 408, 418
LweI GCATC 4 cut(s) 67, 259, 264, 329
MaeIII GTNAC 1 cut(s) 353
MalI GATC 5 cut(s) 170, 215, 296, 393, 437
MboI GATC 5 cut(s) 168, 213, 294, 391, 435
MboII GAAGA 4 cut(s) 130, 178, 304, 401
MflI RGATCY 2 cut(s) 168, 294
MhlI GDGCHC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 7 cut(s) 43, 98, 117, 140, 323, 367, 460
MseI TTAA 2 cut(s) 309, 399
MslI CAYNNNNRTG 1 cut(s) 177
MspA1I CMGCKG 2 cut(s) 327, 422
MspI CCGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 5 cut(s) 168, 213, 294, 391, 435
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 2 cut(s) 157, 334
NmuCI GTSAC 1 cut(s) 353
OliI CACNNNNGTG 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 454
PkrI GCNGC 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 157, 334
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 2 cut(s) 168, 294
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 2 cut(s) 309, 399
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 5 cut(s) 168, 213, 294, 391, 435
Sau96I GGNCC 1 cut(s) 457
SduI GDGCHC 1 cut(s) 350
SetI ASST 8 cut(s) 35, 52, 90, 151, 177, 200, 334, 378
SfaNI GCATC 4 cut(s) 67, 259, 264, 329
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 177
SsiI CCGC 2 cut(s) 327, 420
StyI CCWWGG 2 cut(s) 175, 366
TaqI TCGA 3 cut(s) 216, 225, 378
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 422
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 309, 399
Tru9I TTAA 2 cut(s) 309, 399
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.