Rmu_co8215346.1_g000001

Major allergen Pru

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8215346.1
Physical Location & Seq
Forward (+)
1 .. 257
257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8215346.1_g000001.1.cds

Sequence Viewer

Length: 257 bp
atggcattgacaaggagaactttgtctacagctacagtgtgattgagggagctcctgactcaatcgagaagatctgctacgtgactaagttggtggcatccggcagtggtaccgtcatcaagagcaccagtgaataccatgtcaagggtgatgttgatatcaaggaagagcacgtcaaggccgggaaagagaaggcttctcacctcttcaaggtcattgagaactacctcttggagcaccacgatgcctacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.37

Weight (kDa)

5.66

Isoelectric Point (pI)

16.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 26
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 144, 210
AgsI TTSAA 1 cut(s) 210
AjiI CACGTC 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 2 cut(s) 32, 52
AluI AGCT 2 cut(s) 32, 52
Alw21I GWGCWC 4 cut(s) 54, 127, 173, 239
AoxI GGCC 1 cut(s) 179
Asp718I GGTACC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 160, 193
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 54
BarI GAAGNNNNNNTAC 2 cut(s) 61, 93
Bbv12I GWGCWC 4 cut(s) 54, 127, 173, 239
BcnI CCSGG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 27, 33
BglII AGATCT 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 106, 234
BpuMI CCSGG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 210
Bse1I ACTGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 2 cut(s) 144, 210
BseNI ACTGG 1 cut(s) 128
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 109
BsiHKAI GWGCWC 4 cut(s) 54, 127, 173, 239
BsiSI CCGG 2 cut(s) 101, 182
BslI CCNNNNNNNGG 2 cut(s) 144, 210
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 4 cut(s) 54, 127, 173, 239
Bsp143I GATC 1 cut(s) 71
BspANI GGCC 1 cut(s) 181
BspLI GGNNCC 1 cut(s) 111
BspQI GCTCTTC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 128
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 37, 114
Bst6I CTCTTC 2 cut(s) 161, 211
BstBAI YACGTR 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 86
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 2 cut(s) 27, 33
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 181
BtrI CACGTC 1 cut(s) 174
BtsCI GGATG 1 cut(s) 97
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 42, 111, 135
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 139
CviJI RGCY 4 cut(s) 32, 52, 181, 196
CviKI_1 RGCY 4 cut(s) 32, 52, 181, 196
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eam1104I CTCTTC 2 cut(s) 161, 211
EarI CTCTTC 2 cut(s) 161, 211
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco32I GATATC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 1 cut(s) 138
FblI GTMKAC 1 cut(s) 26
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 101, 182
Hin1II CATG 1 cut(s) 142
HinfI GANTC 1 cut(s) 58
HpaII CCGG 2 cut(s) 101, 182
HphI GGTGA 2 cut(s) 160, 193
Hpy166II GTNNAC 1 cut(s) 27
Hpy188III TCNNGA 3 cut(s) 55, 66, 120
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 37, 114
HpyCH4IV ACGT 2 cut(s) 80, 173
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 2 cut(s) 80, 173
Hsp92II CATG 1 cut(s) 142
KpnI GGTACC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 71
LguI GCTCTTC 1 cut(s) 161
LmnI GCTCC 3 cut(s) 49, 57, 234
LpnPI CCDG 4 cut(s) 68, 114, 141, 195
LweI GCATC 2 cut(s) 106, 234
MaeII ACGT 2 cut(s) 80, 173
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 3 cut(s) 81, 178, 198
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 4 cut(s) 54, 127, 173, 239
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 3 cut(s) 39, 214, 238
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 2 cut(s) 101, 182
MspR9I CCNGG 1 cut(s) 183
NciI CCSGG 1 cut(s) 183
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 142
NlaIV GGNNCC 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 81
PciSI GCTCTTC 1 cut(s) 161
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 111
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 161
Sau3AI GATC 1 cut(s) 71
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 4 cut(s) 54, 127, 173, 239
SetI ASST 7 cut(s) 34, 54, 83, 176, 206, 215, 230
SfaNI GCATC 2 cut(s) 106, 234
SfcI CTRYAG 2 cut(s) 27, 33
SmiMI CAYNNNNRTG 1 cut(s) 242
SstI GAGCTC 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 37, 114
TaiI ACGT 2 cut(s) 83, 176
TaqI TCGA 1 cut(s) 65
TscAI CASTG 3 cut(s) 42, 111, 135
TseFI GTSAC 1 cut(s) 81
Tsp45I GTSAC 1 cut(s) 81
TspRI CASTG 3 cut(s) 42, 111, 135
XagI CCTNNNNNAGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.