Rroxscaffold_5G00365860

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000091
Physical Location & Seq
Forward (+)
47577685 .. 47578167
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365860.1

Sequence Viewer

Length: 483 bp
ATGGGTGTGTTCACTTATGAAACTGAGTTCACCTCCGTCATCCCACCACCAAGACTCTACAAGGCCTTTGTTCTTGATGCTGATAACCTCATCCCCAAGATTGCCCCACAGGCTGTGAAGAGTGCTGAAATCGTTCAAGGCGATGGAGGTGTTGGAACCATCAAGAAGATTCACCTCGGTGAAGGAAGCCAATACAGCTATGTGAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTGTACAAATACAGTATAATTGAAGGTGATGCTATCGGAGACAAAGTTGAGAAAATCTCTTACGAGATTAAGTTAGTGACATCTCCAAGTGGAGGCTCCATCATCAAGAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAGATCAAGGAAGAGCATGTCAAGGCCGGAAAAGAAAGAGCCGCTGGTTTGTTCAAGATCATTGAGAACCACCTTTTGGCCAACCCTGAGGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

160

Amino Acids

17.6

Weight (kDa)

6.07

Isoelectric Point (pI)

22.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 155 1.9e-22 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 457
AciI CCGC 1 cut(s) 423
AcoI YGGCCR 1 cut(s) 459
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 332, 457
AgsI TTSAA 3 cut(s) 137, 263, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AleI CACNNNNGTG 1 cut(s) 177
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 273
AoxI GGCC 4 cut(s) 63, 405, 459, 471
Asp700I GAANNNNTTC 1 cut(s) 132
AsuHPI GGTGA 5 cut(s) 22, 164, 191, 278, 386
AxyI CCTNAGG 1 cut(s) 468
BalI TGGCCA 1 cut(s) 461
Bbv12I GWGCWC 1 cut(s) 353
BccI CCATC 4 cut(s) 137, 167, 212, 347
BcoDI GTCTC 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmiI GGNNCC 2 cut(s) 157, 337
BmsI GCATC 3 cut(s) 67, 217, 259
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 281, 313
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 270, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 457
Bse21I CCTNAGG 1 cut(s) 468
Bse3DI GCAATG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 39, 90
BseLI CCNNNNNNNGG 2 cut(s) 332, 457
BseMI GCAATG 1 cut(s) 364
BseMII CTCAG 2 cut(s) 15, 459
BshFI GGCC 4 cut(s) 65, 407, 461, 473
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 2 cut(s) 332, 457
BsmAI GTCTC 1 cut(s) 273
BsnI GGCC 4 cut(s) 65, 407, 461, 473
Bsp1286I GDGCHC 1 cut(s) 353
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 2 cut(s) 384, 438
BspACI CCGC 1 cut(s) 423
BspANI GGCC 4 cut(s) 65, 407, 461, 473
BspCNI CTCAG 2 cut(s) 16, 460
BspLI GGNNCC 2 cut(s) 157, 337
BspQI GCTCTTC 1 cut(s) 387
BsrDI GCAATG 1 cut(s) 364
BsrGI TGTACA 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 384, 438
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 2 cut(s) 113, 387
BstAUI TGTACA 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 24, 468
BstF5I GGATG 2 cut(s) 39, 90
BstKTI GATC 2 cut(s) 387, 441
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 2 cut(s) 384, 438
BstMWI GCNNNNNNNGC 2 cut(s) 110, 195
BstNSI RCATGY 1 cut(s) 401
Bsu36I CCTNAGG 1 cut(s) 468
BsuRI GGCC 4 cut(s) 65, 407, 461, 473
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 2 cut(s) 39, 90
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 347, 382
CviAII CATG 1 cut(s) 398
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 24, 468
DpnI GATC 2 cut(s) 386, 440
DpnII GATC 2 cut(s) 384, 438
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 2 cut(s) 113, 387
EarI CTCTTC 2 cut(s) 113, 387
Eco147I AGGCCT 2 cut(s) 65, 473
Eco81I CCTNAGG 1 cut(s) 468
FaeI CATG 1 cut(s) 401
FaiI YATR 4 cut(s) 18, 201, 257, 399
FatI CATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 2 cut(s) 26, 77
Fsp4HI GCNGC 1 cut(s) 423
GluI GCNGC 1 cut(s) 423
HaeIII GGCC 4 cut(s) 65, 407, 461, 473
HapII CCGG 1 cut(s) 408
Hin1II CATG 1 cut(s) 401
HinfI GANTC 2 cut(s) 54, 169
HpaII CCGG 1 cut(s) 408
HphI GGTGA 5 cut(s) 22, 164, 191, 278, 386
Hpy166II GTNNAC 3 cut(s) 12, 30, 244
Hpy188I TCNGA 2 cut(s) 213, 278
Hpy188III TCNNGA 4 cut(s) 74, 163, 346, 436
Hpy8I GTNNAC 3 cut(s) 12, 30, 244
HpyAV CCTTC 2 cut(s) 176, 257
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 195
HpyF3I CTNAG 2 cut(s) 24, 468
Hsp92II CATG 1 cut(s) 401
Kzo9I GATC 2 cut(s) 384, 438
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 4 cut(s) 95, 367, 411, 421
LweI GCATC 3 cut(s) 67, 217, 259
MaeIII GTNAC 1 cut(s) 316
MalI GATC 2 cut(s) 386, 440
MboI GATC 2 cut(s) 384, 438
MboII GAAGA 3 cut(s) 130, 178, 404
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 1 cut(s) 258
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 7 cut(s) 43, 98, 140, 185, 326, 370, 463
Mox20I TGGCCA 1 cut(s) 461
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 461
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 110, 195
NdeII GATC 2 cut(s) 384, 438
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 2 cut(s) 157, 337
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 401
OliI CACNNNNGTG 1 cut(s) 177
PceI AGGCCT 2 cut(s) 65, 473
PciSI GCTCTTC 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 157, 337
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 2 cut(s) 384, 438
SchI GAGTC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 353
SetI ASST 9 cut(s) 35, 90, 151, 177, 200, 268, 376, 381, 456
SfaNI GCATC 3 cut(s) 67, 217, 259
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 1 cut(s) 258
SseBI AGGCCT 2 cut(s) 65, 473
SsiI CCGC 1 cut(s) 423
StuI AGGCCT 2 cut(s) 65, 473
TaaI ACNGT 1 cut(s) 254
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 316
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 457
XceI RCATGY 1 cut(s) 401
XmnI GAANNNNTTC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.