pycom13g13760

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000091
Physical Location & Seq
Forward (+)
9762060 .. 9762632
573 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g13760.2

Sequence Viewer

Length: 408 bp
ATGCTGACAACCTCATCCCCAAGATTGCACCCCAAGCAGTCAAGCATGCTGAGATCGATCCTTGAAGGAAACGGTGGCCCCGGAACCATCAAGAAGATCACTTTTGGTGAAGGCAGCCAGTACGGCTACGTGAAGCACAGGGTCGACTCGATTGACGAAGCAAGCTACTCATACGCCTATACTTTGATTGAAGGAGATGCTTTGACAGACACCATCGAGAAAATATCTTACGAGACCAAGTTGGTGGCATCTGGAAGTGGTTCAACCATCAAGAGCATCAGTCACTACCATACCAAAGAAGGTATTGAAATTAAGGAAGAGCACGTGAAGGCTGGAAAAGAGAAGGCCCATGGTTTGTTCAAGCTTATTGAGAGCTACCTTAAGGACCACCCCGACGCATACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

136

Amino Acids

14.91

Weight (kDa)

6.65

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AclWI GGATC 1 cut(s) 52
AcvI CACGTG 1 cut(s) 325
AfaI GTAC 1 cut(s) 122
AflII CTTAAG 1 cut(s) 380
AgsI TTSAA 5 cut(s) 65, 191, 264, 308, 361
AluBI AGCT 3 cut(s) 165, 364, 375
AluI AGCT 3 cut(s) 165, 364, 375
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 52
AoxI GGCC 2 cut(s) 76, 345
ApeKI GCWGC 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 259
AspS9I GGNCC 3 cut(s) 77, 346, 385
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 119
AvaII GGWCC 1 cut(s) 385
BbrPI CACGTG 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 95, 221, 275
BceAI ACGGC 1 cut(s) 139
BcnI CCSGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 227
BfrI CTTAAG 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 77, 346, 385
BmiI GGNNCC 2 cut(s) 79, 85
BmrFI CCNGG 1 cut(s) 81
BmsI GCATC 3 cut(s) 187, 257, 285
BpuMI CCSGG 1 cut(s) 81
Bsa29I ATCGAT 1 cut(s) 56
BsaAI YACGTR 2 cut(s) 130, 325
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 79, 349
Bse1I ACTGG 1 cut(s) 118
BseCI ATCGAT 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 79, 349
BseGI GGATG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 126
BshFI GGCC 2 cut(s) 78, 347
BshVI ATCGAT 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 2 cut(s) 78, 347
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 3 cut(s) 53, 57, 96
Bsp19I CCATGG 1 cut(s) 349
BspANI GGCC 2 cut(s) 78, 347
BspCNI CTCAG 1 cut(s) 42
BspDI ATCGAT 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 79, 85
BspPI GGATC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 312
BspTI CTTAAG 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 79, 349
BssMI GATC 3 cut(s) 53, 57, 96
BssT1I CCWWGG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 380
BstBAI YACGTR 2 cut(s) 130, 325
BstC8I GCNNGC 2 cut(s) 47, 163
BstDEI CTNAG 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 56, 60, 99
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 3 cut(s) 53, 57, 96
BstMWI GCNNNNNNNGC 2 cut(s) 34, 123
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 56
BsuRI GGCC 2 cut(s) 78, 347
BsuTUI ATCGAT 1 cut(s) 56
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 47, 163
Cfr13I GGNCC 3 cut(s) 77, 346, 385
ClaI ATCGAT 1 cut(s) 56
Csp6I GTAC 1 cut(s) 121
CviAII CATG 2 cut(s) 46, 350
CviJI RGCY 8 cut(s) 78, 117, 126, 165, 332, 347, 364, 375
CviKI_1 RGCY 8 cut(s) 78, 117, 126, 165, 332, 347, 364, 375
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 55, 59, 98
DpnII GATC 3 cut(s) 53, 57, 96
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 349
Eco31I GGTCTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 2 cut(s) 49, 353
FaiI YATR 6 cut(s) 47, 172, 180, 291, 351, 400
FatI CATG 2 cut(s) 45, 349
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 2 cut(s) 78, 347
HapII CCGG 1 cut(s) 81
Hin1II CATG 2 cut(s) 49, 353
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 1 cut(s) 146
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 4 cut(s) 91, 217, 252, 271
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 6 cut(s) 59, 104, 185, 293, 322, 337
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 2 cut(s) 129, 324
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 123
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 2 cut(s) 129, 324
Hsp92II CATG 2 cut(s) 49, 353
Kzo9I GATC 3 cut(s) 53, 57, 96
LguI GCTCTTC 1 cut(s) 312
LpnPI CCDG 5 cut(s) 94, 124, 131, 237, 318
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 3 cut(s) 187, 257, 285
MaeII ACGT 2 cut(s) 129, 324
MaeIII GTNAC 1 cut(s) 281
MalI GATC 3 cut(s) 55, 59, 98
MboI GATC 3 cut(s) 53, 57, 96
MboII GAAGA 2 cut(s) 106, 329
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 1 cut(s) 22
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 2 cut(s) 312, 381
MspCI CTTAAG 1 cut(s) 380
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 81
MwoI GCNNNNNNNGC 2 cut(s) 34, 123
NciI CCSGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 349
NdeII GATC 3 cut(s) 53, 57, 96
NlaIII CATG 2 cut(s) 49, 353
NlaIV GGNNCC 2 cut(s) 79, 85
NmuCI GTSAC 1 cut(s) 281
NspI RCATGY 1 cut(s) 49
PaeI GCATGC 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 140
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
PpsI GAGTC 1 cut(s) 140
Ppu21I YACGTR 2 cut(s) 130, 325
PspCI CACGTG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 79, 85
PspPI GGNCC 3 cut(s) 77, 346, 385
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SalI GTCGAC 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 312, 381
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 3 cut(s) 53, 57, 96
Sau96I GGNCC 3 cut(s) 77, 346, 385
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 81
SduI GDGCHC 1 cut(s) 324
SetI ASST 8 cut(s) 14, 132, 167, 304, 327, 366, 377, 381
SfaNI GCATC 3 cut(s) 187, 257, 285
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SphI GCATGC 1 cut(s) 49
Sse9I AATT 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 2 cut(s) 132, 327
TaqI TCGA 4 cut(s) 56, 144, 149, 216
TasI AATT 1 cut(s) 309
Tru1I TTAA 2 cut(s) 312, 381
Tru9I TTAA 2 cut(s) 312, 381
TseFI GTSAC 1 cut(s) 281
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 281
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 385
XceI RCATGY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.