Rmu_sc0002260.1_g000094

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002260.1
OG0000091
Physical Location & Seq
Forward (+)
373783 .. 374394
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002260.1_g000094.1.cds

Sequence Viewer

Length: 405 bp
atgggtgtgttcacttatgaaaccgagttcacctccgtcatcccaccagctagattgttcaggtctttcattcttgatgtggacaatctcatcccgaagattgcacctcaagcaatcaagggtactgaaatccttcaaggtgatggagggcctggaaccatcaagaaagttacctttggggaaggagatgtgttatctgatcacaagattgagaaggtctcttacgagaccaaattgcttgcatctgctgatggaggaactgtggttaaaagcatcagtaactaccacaccattgctgatgttgagatcaaagaagagcatgttaaggctggaaaagagaaggcatctcagctcttcaagctggttgaaggctacctcttggccaatcccgagtcctacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

134

Amino Acids

14.61

Weight (kDa)

5.37

Isoelectric Point (pI)

27.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 381
AfaI GTAC 1 cut(s) 124
AgsI TTSAA 3 cut(s) 137, 358, 368
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 50, 352, 361
AluI AGCT 3 cut(s) 50, 352, 361
Alw26I GTCTC 2 cut(s) 221, 223
Ama87I CYCGRG 1 cut(s) 389
AoxI GGCC 2 cut(s) 149, 381
Asp700I GAANNNNTTC 1 cut(s) 132
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 2 cut(s) 22, 152
AvaI CYCGRG 1 cut(s) 389
BalI TGGCCA 1 cut(s) 383
BarI GAAGNNNNNNTAC 2 cut(s) 206, 238
BccI CCATC 3 cut(s) 137, 167, 245
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 221, 223
BfaI CTAG 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 157
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 3 cut(s) 251, 282, 353
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 203, 235
BpuEI CTTGAG 1 cut(s) 93
BsaI GGTCTC 2 cut(s) 221, 223
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 153
BseGI GGATG 2 cut(s) 39, 90
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 362
BshFI GGCC 2 cut(s) 151, 383
BsiHKCI CYCGRG 1 cut(s) 389
BsmAI GTCTC 2 cut(s) 221, 223
BsnI GGCC 2 cut(s) 151, 383
Bso31I GGTCTC 2 cut(s) 221, 223
BsoBI CYCGRG 1 cut(s) 389
Bsp143I GATC 2 cut(s) 199, 306
BspANI GGCC 2 cut(s) 151, 383
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 157
BspQI GCTCTTC 2 cut(s) 309, 359
BspTNI GGTCTC 2 cut(s) 221, 223
BsrDI GCAATG 1 cut(s) 291
BssMI GATC 2 cut(s) 199, 306
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 2 cut(s) 309, 359
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 39, 90
BstKTI GATC 2 cut(s) 202, 309
BstMAI GTCTC 2 cut(s) 221, 223
BstMBI GATC 2 cut(s) 199, 306
BstMWI GCNNNNNNNGC 2 cut(s) 110, 358
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 151, 383
BtsCI GGATG 2 cut(s) 39, 90
Cac8I GCNNGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 123
CviAII CATG 1 cut(s) 320
CviJI RGCY 7 cut(s) 50, 151, 329, 352, 361, 372, 383
CviKI_1 RGCY 7 cut(s) 50, 151, 329, 352, 361, 372, 383
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 201, 308
DpnII GATC 2 cut(s) 199, 306
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 2 cut(s) 309, 359
EarI CTCTTC 2 cut(s) 309, 359
Eco31I GGTCTC 2 cut(s) 221, 223
Eco88I CYCGRG 1 cut(s) 389
EcoO109I RGGNCCY 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 323
FaiI YATR 2 cut(s) 18, 321
FatI CATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 199
FokI GGATG 2 cut(s) 26, 77
FspBI CTAG 1 cut(s) 51
HaeIII GGCC 2 cut(s) 151, 383
Hin1II CATG 1 cut(s) 323
HinfI GANTC 1 cut(s) 392
HphI GGTGA 2 cut(s) 22, 152
Hpy166II GTNNAC 3 cut(s) 12, 30, 82
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 4 cut(s) 74, 94, 163, 389
Hpy8I GTNNAC 3 cut(s) 12, 30, 82
HpyAV CCTTC 5 cut(s) 143, 176, 208, 334, 362
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 104, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 358
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 199, 306
LguI GCTCTTC 2 cut(s) 309, 359
LpnPI CCDG 6 cut(s) 46, 60, 138, 165, 315, 347
LweI GCATC 3 cut(s) 251, 282, 353
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 169, 278
MalI GATC 2 cut(s) 201, 308
MboI GATC 2 cut(s) 199, 306
MboII GAAGA 3 cut(s) 109, 326, 346
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 5 cut(s) 43, 117, 140, 248, 386
Mox20I TGGCCA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 132
MscI TGGCCA 1 cut(s) 383
MseI TTAA 2 cut(s) 267, 324
Msp20I TGGCCA 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 110, 358
NdeII GATC 2 cut(s) 199, 306
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 157
NspI RCATGY 1 cut(s) 323
PciSI GCTCTTC 2 cut(s) 309, 359
PdmI GAANNNNTTC 1 cut(s) 132
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SapI GCTCTTC 2 cut(s) 309, 359
SaqAI TTAA 2 cut(s) 267, 324
Sau3AI GATC 2 cut(s) 199, 306
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 153
SfaNI GCATC 3 cut(s) 251, 282, 353
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 233
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 262
TasI AATT 1 cut(s) 233
Tru1I TTAA 2 cut(s) 267, 324
Tru9I TTAA 2 cut(s) 267, 324
TspDTI ATGAA 2 cut(s) 33, 58
TspGWI ACGGA 1 cut(s) 25
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.