MD13G1160600.v1.1

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000091
Physical Location & Seq
Reverse (-)
12606736 .. 12607417
682 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1160600.v1.1.491

Sequence Viewer

Length: 423 bp
ATGGGTGTTTTCATATACGAATCTGAGTTCACCTCCGTCATTCCCCCTGCTAGGTTGTTCAATGCCTTTGTTCTTGATGCTGACAACCTCATCCCAAAGATTGCACCACAAGCAGTGAAGAGCGCTGAGATCCTTGAAGGAGATGGTGGAGTTGGAACTATTAAGAAGATCAACTTTGGTGAAGGTAGCACATACAGTGTGATTGAAGGAGATGCTATCTCTGAGACAATTGAGAAGATCTCTTATGAGACTAAGTTGGTGGCTTCCGGCAGCGGTTCCGTCATTAAGAGCACCAGCCACTACCACACGAAGGGTGACGTTGAGATCAAGGAAGAGCATGTTAAGGCTGGCAAAGAGAAGGCCTCCCACCTCTTCAAATTGATTGAGAACTACCTCTTGGAGCACAAGGACGCCTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

141

Amino Acids

15.26

Weight (kDa)

5.35

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 63 2.6e-06 Pathogenesis-related protein Bet v 1 family
Bet_v_1 PF00407 64 - 135 6.1e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 273
AclWI GGATC 1 cut(s) 124
AcyI GRCGYC 1 cut(s) 411
AfeI AGCGCT 1 cut(s) 124
AfiI CCNNNNNNNGG 2 cut(s) 51, 310
AgsI TTSAA 4 cut(s) 61, 137, 206, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
Alw21I GWGCWC 2 cut(s) 293, 405
Alw26I GTCTC 2 cut(s) 218, 242
AlwI GGATC 1 cut(s) 124
Aor51HI AGCGCT 1 cut(s) 124
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 270
AspLEI GCGC 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 22, 191, 326
Bbv12I GWGCWC 2 cut(s) 293, 405
BbvI GCAGC 1 cut(s) 282
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 2 cut(s) 218, 242
BfaI CTAG 2 cut(s) 51, 421
BfoI RGCGCY 1 cut(s) 126
BglII AGATCT 1 cut(s) 237
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 277
BmsI GCATC 2 cut(s) 67, 202
BplI GAGNNNNNCTC 6 cut(s) 17, 49, 224, 256, 347, 379
BsaHI GRCGYC 1 cut(s) 411
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 310
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 51, 310
BseMII CTCAG 3 cut(s) 15, 117, 213
BseXI GCAGC 1 cut(s) 282
BshFI GGCC 1 cut(s) 362
BsiHKAI GWGCWC 2 cut(s) 293, 405
BsiSI CCGG 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 51, 310
BsmAI GTCTC 2 cut(s) 218, 242
BsnI GGCC 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 293, 405
Bsp143I GATC 4 cut(s) 129, 168, 237, 324
BspACI CCGC 1 cut(s) 273
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 3 cut(s) 16, 118, 214
BspLI GGNNCC 1 cut(s) 277
BspPI GGATC 1 cut(s) 124
BspQI GCTCTTC 2 cut(s) 113, 327
BssMI GATC 4 cut(s) 129, 168, 237, 324
BssNI GRCGYC 1 cut(s) 411
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 3 cut(s) 113, 327, 377
BstACI GRCGYC 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 4 cut(s) 24, 126, 222, 252
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 4 cut(s) 132, 171, 240, 327
BstMAI GTCTC 2 cut(s) 218, 242
BstMBI GATC 4 cut(s) 129, 168, 237, 324
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNSI RCATGY 1 cut(s) 341
BstV1I GCAGC 1 cut(s) 282
BstX2I RGATCY 2 cut(s) 129, 237
BstYI RGATCY 2 cut(s) 129, 237
BsuRI GGCC 1 cut(s) 362
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 202
Cac8I GCNNGC 1 cut(s) 349
CfoI GCGC 1 cut(s) 125
CviAII CATG 1 cut(s) 338
CviJI RGCY 4 cut(s) 263, 297, 347, 362
CviKI_1 RGCY 4 cut(s) 263, 297, 347, 362
DdeI CTNAG 4 cut(s) 24, 126, 222, 252
DpnI GATC 4 cut(s) 131, 170, 239, 326
DpnII GATC 4 cut(s) 129, 168, 237, 324
Eam1104I CTCTTC 3 cut(s) 113, 327, 377
EarI CTCTTC 3 cut(s) 113, 327, 377
Eco147I AGGCCT 1 cut(s) 362
Eco47III AGCGCT 1 cut(s) 124
FaeI CATG 1 cut(s) 341
FaiI YATR 5 cut(s) 14, 16, 193, 246, 339
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 271
FspBI CTAG 2 cut(s) 51, 421
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 271
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 362
HapII CCGG 1 cut(s) 267
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 1 cut(s) 341
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 267
HphI GGTGA 3 cut(s) 22, 191, 326
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 25, 223
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 5 cut(s) 131, 176, 200, 304, 352
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 4 cut(s) 24, 126, 222, 252
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 1 cut(s) 341
HspAI GCGC 1 cut(s) 123
Kzo9I GATC 4 cut(s) 129, 168, 237, 324
LguI GCTCTTC 2 cut(s) 113, 327
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 4 cut(s) 60, 280, 307, 333
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 2 cut(s) 67, 202
MaeI CTAG 2 cut(s) 51, 421
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 314
MalI GATC 4 cut(s) 131, 170, 239, 326
MboI GATC 4 cut(s) 129, 168, 237, 324
MboII GAAGA 5 cut(s) 130, 178, 247, 344, 364
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 2 cut(s) 129, 237
MhlI GDGCHC 2 cut(s) 293, 405
MluCI AATT 2 cut(s) 228, 377
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 43, 98, 373, 380, 404
MseI TTAA 3 cut(s) 162, 285, 342
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 4 cut(s) 129, 168, 237, 324
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 341
PceI AGGCCT 1 cut(s) 362
PciSI GCTCTTC 2 cut(s) 113, 327
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 272
PspN4I GGNNCC 1 cut(s) 277
PsuI RGATCY 2 cut(s) 129, 237
SapI GCTCTTC 2 cut(s) 113, 327
SaqAI TTAA 3 cut(s) 162, 285, 342
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 4 cut(s) 129, 168, 237, 324
SduI GDGCHC 2 cut(s) 293, 405
SetI ASST 7 cut(s) 35, 56, 90, 187, 321, 372, 396
SfaNI GCATC 2 cut(s) 67, 202
Sse9I AATT 2 cut(s) 228, 377
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 1 cut(s) 273
SspMI CTAG 2 cut(s) 51, 421
StuI AGGCCT 1 cut(s) 362
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 321
TasI AATT 2 cut(s) 228, 377
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 3 cut(s) 162, 285, 342
Tru9I TTAA 3 cut(s) 162, 285, 342
TscAI CASTG 2 cut(s) 120, 202
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 314
TspGWI ACGGA 2 cut(s) 25, 268
TspRI CASTG 2 cut(s) 120, 202
XceI RCATGY 1 cut(s) 341
XspI CTAG 2 cut(s) 51, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.