RchiOBHm_Chr4g0423921

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000091
Physical Location & Seq
Reverse (-)
49502234 .. 49502676
443 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39325

Sequence Viewer

Length: 399 bp
ATGCCACCATGCAATCAAACGCGGAAACTGGATGGGGATCCGGAAGTCGTTCAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATTCACCTCGGTGAAGGAAGCGAGTACAGTTACGTGAAGCATCAGATTGATGGACTTGACAAAGACAACTTTGTTTACAACTACAGCATAGTCGAAGGGGATGCTATTGGAGACAAAGTTGAGAAAATCTCTTACGAGATTAAATTGGTTGCATCTCCGAGTGGAGGCTCCATCATAAAGAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAAATCAAGGAAGAGCGTGTCAAGGCCCGTAAAGAAAGAGCCGCTGGTTTGTTCAAGATTGTTGAGAACAACCTTTTGGGAAACCCTGATGCCTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

132

Amino Acids

14.51

Weight (kDa)

5.81

Isoelectric Point (pI)

16.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 15 - 125 9.3e-13 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 2 cut(s) 22, 339
AclWI GGATC 2 cut(s) 32, 45
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 53, 299, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AleI CACNNNNGTG 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 2 cut(s) 32, 45
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 48
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 4 cut(s) 68, 80, 107, 302
BamHI GGATCC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 269
BccI CCATC 5 cut(s) 26, 53, 83, 128, 263
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 1 cut(s) 397
BfmI CTRYAG 1 cut(s) 166
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 3 cut(s) 39, 73, 253
BmsI GCATC 4 cut(s) 133, 175, 245, 376
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 37, 190
BseJI GATNNNNATC 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 1 cut(s) 323
Bsp1286I GDGCHC 1 cut(s) 269
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 2 cut(s) 22, 339
BspANI GGCC 1 cut(s) 323
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 39, 73, 253
BspPI GGATC 2 cut(s) 32, 45
BspQI GCTCTTC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 280
BsrI ACTGG 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 118
BstF5I GGATG 2 cut(s) 37, 190
BstFNI CGCG 1 cut(s) 22
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 37, 190
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 263, 298
CviAII CATG 1 cut(s) 9
CviJI RGCY 4 cut(s) 252, 273, 323, 338
CviKI_1 RGCY 4 cut(s) 252, 273, 323, 338
CviQI GTAC 1 cut(s) 109
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
FaeI CATG 1 cut(s) 12
FaiI YATR 3 cut(s) 10, 173, 260
FatI CATG 1 cut(s) 8
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 2 cut(s) 44, 197
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 397
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 323
HapII CCGG 1 cut(s) 41
Hin1II CATG 1 cut(s) 12
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 41
HphI GGTGA 4 cut(s) 68, 80, 107, 302
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 129, 243
Hpy188III TCNNGA 3 cut(s) 41, 79, 352
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 2 cut(s) 92, 173
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 12, 236, 285
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 12
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 37
LguI GCTCTTC 1 cut(s) 303
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 4 cut(s) 14, 54, 283, 327
LweI GCATC 4 cut(s) 133, 175, 245, 376
MaeI CTAG 1 cut(s) 397
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 2 cut(s) 94, 320
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 4 cut(s) 56, 101, 242, 286
MroI TCCGGA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 41
MvnI CGCG 1 cut(s) 22
NdeII GATC 1 cut(s) 37
NlaIII CATG 1 cut(s) 12
NlaIV GGNNCC 3 cut(s) 39, 73, 253
OliI CACNNNNGTG 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 85
PkrI GCNGC 1 cut(s) 340
Ppu21I YACGTR 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 39, 73, 253
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 322
SduI GDGCHC 1 cut(s) 269
SetI ASST 7 cut(s) 58, 67, 93, 120, 292, 297, 372
SfaNI GCATC 4 cut(s) 133, 175, 245, 376
SfcI CTRYAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 1 cut(s) 227
SsiI CCGC 2 cut(s) 22, 339
SspMI CTAG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 177
TasI AATT 1 cut(s) 227
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.