Major allergen Pru
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PADRE | PF14009 | 1 - 183 | 2.2e-32 | PADRE domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 495 |
| AccI | GTMKAC | 2 cut(s) | 22, 503 |
| AccII | CGCG | 1 cut(s) | 57 |
| AccIII | TCCGGA | 1 cut(s) | 285 |
| AcuI | CTGAAG | 1 cut(s) | 188 |
| AdeI | CACNNNGTG | 1 cut(s) | 142 |
| AfaI | GTAC | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 103, 285, 451, 568 |
| AgsI | TTSAA | 2 cut(s) | 187, 559 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 515, 547 |
| AluBI | AGCT | 2 cut(s) | 160, 292 |
| AluI | AGCT | 2 cut(s) | 160, 292 |
| Alw21I | GWGCWC | 2 cut(s) | 96, 149 |
| Alw44I | GTGCAC | 1 cut(s) | 145 |
| Aor13HI | TCCGGA | 1 cut(s) | 285 |
| AoxI | GGCC | 3 cut(s) | 125, 211, 442 |
| ApaLI | GTGCAC | 1 cut(s) | 145 |
| ApeKI | GCWGC | 3 cut(s) | 229, 275, 602 |
| AspLEI | GCGC | 2 cut(s) | 57, 496 |
| AspS9I | GGNCC | 4 cut(s) | 126, 283, 363, 442 |
| AsuC2I | CCSGG | 2 cut(s) | 426, 441 |
| AvaII | GGWCC | 2 cut(s) | 283, 363 |
| BaeGI | GKGCMC | 1 cut(s) | 149 |
| Bbv12I | GWGCWC | 2 cut(s) | 96, 149 |
| BbvI | GCAGC | 3 cut(s) | 216, 262, 614 |
| BccI | CCATC | 1 cut(s) | 472 |
| BceAI | ACGGC | 3 cut(s) | 88, 263, 312 |
| BciVI | GTATCC | 1 cut(s) | 529 |
| BcnI | CCSGG | 2 cut(s) | 426, 441 |
| BfaI | CTAG | 2 cut(s) | 393, 471 |
| BfmI | CTRYAG | 1 cut(s) | 614 |
| BfuI | GTATCC | 1 cut(s) | 529 |
| BisI | GCNGC | 3 cut(s) | 230, 276, 603 |
| BlsI | GCNGC | 3 cut(s) | 231, 277, 604 |
| Bme1390I | CCNGG | 2 cut(s) | 426, 441 |
| Bme18I | GGWCC | 2 cut(s) | 283, 363 |
| BmgT120I | GGNCC | 4 cut(s) | 126, 283, 363, 442 |
| BmiI | GGNNCC | 2 cut(s) | 128, 456 |
| BmrFI | CCNGG | 2 cut(s) | 426, 441 |
| BmrI | ACTGGG | 2 cut(s) | 92, 180 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BmuI | ACTGGG | 2 cut(s) | 92, 180 |
| BpuMI | CCSGG | 2 cut(s) | 426, 441 |
| BsaJI | CCNNGG | 2 cut(s) | 279, 425 |
| BsaWI | WCCGGW | 4 cut(s) | 119, 285, 365, 561 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 421, 451, 539, 569 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 103, 285, 451, 568 |
| Bse118I | RCCGGY | 1 cut(s) | 444 |
| Bse1I | ACTGG | 2 cut(s) | 98, 175 |
| Bse3DI | GCAATG | 1 cut(s) | 385 |
| BseAI | TCCGGA | 1 cut(s) | 285 |
| BseDI | CCNNGG | 2 cut(s) | 279, 425 |
| BseGI | GGATG | 1 cut(s) | 483 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 103, 285, 451, 568 |
| BseMI | GCAATG | 1 cut(s) | 385 |
| BseNI | ACTGG | 2 cut(s) | 98, 175 |
| BseRI | GAGGAG | 1 cut(s) | 152 |
| BseSI | GKGCMC | 1 cut(s) | 149 |
| BseXI | GCAGC | 3 cut(s) | 216, 262, 614 |
| BseYI | CCCAGC | 1 cut(s) | 156 |
| Bsh1236I | CGCG | 1 cut(s) | 57 |
| BshFI | GGCC | 3 cut(s) | 127, 213, 444 |
| BsiHKAI | GWGCWC | 2 cut(s) | 96, 149 |
| BsiSI | CCGG | 8 cut(s) | 120, 286, 366, 425, 440, 445, 458, 562 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 103, 285, 451, 568 |
| BsnI | GGCC | 3 cut(s) | 127, 213, 444 |
| Bsp1286I | GDGCHC | 2 cut(s) | 96, 149 |
| Bsp13I | TCCGGA | 1 cut(s) | 285 |
| BspANI | GGCC | 3 cut(s) | 127, 213, 444 |
| BspEI | TCCGGA | 1 cut(s) | 285 |
| BspFNI | CGCG | 1 cut(s) | 57 |
| BspLI | GGNNCC | 2 cut(s) | 128, 456 |
| BsrDI | GCAATG | 1 cut(s) | 385 |
| BsrFI | RCCGGY | 1 cut(s) | 444 |
| BsrI | ACTGG | 2 cut(s) | 98, 175 |
| BssAI | RCCGGY | 1 cut(s) | 444 |
| BssECI | CCNNGG | 2 cut(s) | 279, 425 |
| Bst4CI | ACNGT | 2 cut(s) | 531, 618 |
| Bst6I | CTCTTC | 2 cut(s) | 78, 204 |
| BstC8I | GCNNGC | 1 cut(s) | 10 |
| BstDSI | CCRYGG | 1 cut(s) | 279 |
| BstF5I | GGATG | 1 cut(s) | 483 |
| BstFNI | CGCG | 1 cut(s) | 57 |
| BstHHI | GCGC | 2 cut(s) | 57, 496 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 133, 187, 589 |
| BstNSI | RCATGY | 1 cut(s) | 596 |
| BstSCI | CCNGG | 2 cut(s) | 424, 439 |
| BstSFI | CTRYAG | 1 cut(s) | 614 |
| BstSLI | GKGCMC | 1 cut(s) | 149 |
| BstUI | CGCG | 1 cut(s) | 57 |
| BstV1I | GCAGC | 3 cut(s) | 216, 262, 614 |
| BsuI | GTATCC | 1 cut(s) | 529 |
| BsuRI | GGCC | 3 cut(s) | 127, 213, 444 |
| BtgI | CCRYGG | 1 cut(s) | 279 |
| BtsCI | GGATG | 1 cut(s) | 483 |
| BtsIMutI | CAGTG | 2 cut(s) | 115, 527 |
| Cac8I | GCNNGC | 1 cut(s) | 10 |
| CfoI | GCGC | 2 cut(s) | 57, 496 |
| Cfr10I | RCCGGY | 1 cut(s) | 444 |
| Cfr13I | GGNCC | 4 cut(s) | 126, 283, 363, 442 |
| Csp6I | GTAC | 1 cut(s) | 175 |
| CviAII | CATG | 2 cut(s) | 519, 593 |
| CviQI | GTAC | 1 cut(s) | 175 |
| DraIII | CACNNNGTG | 1 cut(s) | 142 |
| Eam1104I | CTCTTC | 2 cut(s) | 78, 204 |
| EarI | CTCTTC | 2 cut(s) | 78, 204 |
| Eco47I | GGWCC | 2 cut(s) | 283, 363 |
| Eco57I | CTGAAG | 1 cut(s) | 188 |
| EcoO109I | RGGNCCY | 1 cut(s) | 126 |
| EcoT22I | ATGCAT | 1 cut(s) | 387 |
| FaeI | CATG | 2 cut(s) | 522, 596 |
| FaiI | YATR | 6 cut(s) | 266, 383, 489, 520, 542, 594 |
| FatI | CATG | 2 cut(s) | 518, 592 |
| FblI | GTMKAC | 2 cut(s) | 22, 503 |
| Fnu4HI | GCNGC | 3 cut(s) | 230, 276, 603 |
| FokI | GGATG | 1 cut(s) | 490 |
| Fsp4HI | GCNGC | 3 cut(s) | 230, 276, 603 |
| FspBI | CTAG | 2 cut(s) | 393, 471 |
| FspI | TGCGCA | 1 cut(s) | 495 |
| GlaI | GCGC | 2 cut(s) | 56, 495 |
| GluI | GCNGC | 3 cut(s) | 230, 276, 603 |
| GsaI | CCCAGC | 1 cut(s) | 160 |
| HaeIII | GGCC | 3 cut(s) | 127, 213, 444 |
| HapII | CCGG | 8 cut(s) | 120, 286, 366, 425, 440, 445, 458, 562 |
| HhaI | GCGC | 2 cut(s) | 57, 496 |
| Hin1II | CATG | 2 cut(s) | 522, 596 |
| Hin6I | GCGC | 2 cut(s) | 55, 494 |
| HinP1I | GCGC | 2 cut(s) | 55, 494 |
| HinfI | GANTC | 2 cut(s) | 376, 572 |
| HpaII | CCGG | 8 cut(s) | 120, 286, 366, 425, 440, 445, 458, 562 |
| Hpy166II | GTNNAC | 4 cut(s) | 23, 113, 147, 504 |
| Hpy188I | TCNGA | 3 cut(s) | 372, 477, 577 |
| Hpy188III | TCNNGA | 1 cut(s) | 286 |
| Hpy8I | GTNNAC | 4 cut(s) | 23, 113, 147, 504 |
| Hpy99I | CGWCG | 3 cut(s) | 83, 361, 424 |
| HpyAV | CCTTC | 2 cut(s) | 117, 336 |
| HpyCH4III | ACNGT | 2 cut(s) | 531, 618 |
| HpyCH4IV | ACGT | 1 cut(s) | 78 |
| HpyCH4V | TGCA | 3 cut(s) | 147, 385, 583 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 133, 187, 589 |
| HpySE526I | ACGT | 1 cut(s) | 78 |
| Hsp92II | CATG | 2 cut(s) | 522, 596 |
| HspAI | GCGC | 2 cut(s) | 55, 494 |
| Kpn2I | TCCGGA | 1 cut(s) | 285 |
| LmnI | GCTCC | 2 cut(s) | 165, 454 |
| Lsp1109I | GCAGC | 3 cut(s) | 216, 262, 614 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 2 cut(s) | 393, 471 |
| MaeII | ACGT | 1 cut(s) | 78 |
| MaeIII | GTNAC | 1 cut(s) | 407 |
| MboII | GAAGA | 4 cut(s) | 47, 95, 191, 194 |
| MhlI | GDGCHC | 2 cut(s) | 96, 149 |
| MlyI | GAGTC | 2 cut(s) | 385, 581 |
| MmeI | TCCRAC | 3 cut(s) | 455, 513, 555 |
| MnlI | CCTC | 7 cut(s) | 173, 325, 354, 454, 492, 543, 592 |
| Mph1103I | ATGCAT | 1 cut(s) | 387 |
| MroI | TCCGGA | 1 cut(s) | 285 |
| MspI | CCGG | 8 cut(s) | 120, 286, 366, 425, 440, 445, 458, 562 |
| MspR9I | CCNGG | 2 cut(s) | 426, 441 |
| MvnI | CGCG | 1 cut(s) | 57 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 133, 187, 589 |
| NciI | CCSGG | 2 cut(s) | 426, 441 |
| NlaIII | CATG | 2 cut(s) | 522, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 128, 456 |
| NsbI | TGCGCA | 1 cut(s) | 495 |
| NsiI | ATGCAT | 1 cut(s) | 387 |
| NspI | RCATGY | 1 cut(s) | 596 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 78, 87 |
| PkrI | GCNGC | 3 cut(s) | 231, 277, 604 |
| PleI | GAGTC | 2 cut(s) | 384, 580 |
| PpsI | GAGTC | 2 cut(s) | 384, 580 |
| PspFI | CCCAGC | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 2 cut(s) | 128, 456 |
| PspPI | GGNCC | 4 cut(s) | 126, 283, 363, 442 |
| RsaI | GTAC | 1 cut(s) | 176 |
| RsaNI | GTAC | 1 cut(s) | 175 |
| SatI | GCNGC | 3 cut(s) | 230, 276, 603 |
| Sau96I | GGNCC | 4 cut(s) | 126, 283, 363, 442 |
| SchI | GAGTC | 2 cut(s) | 385, 581 |
| ScrFI | CCNGG | 2 cut(s) | 426, 441 |
| SduI | GDGCHC | 2 cut(s) | 96, 149 |
| SetI | ASST | 7 cut(s) | 81, 162, 294, 347, 365, 503, 518 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SfcI | CTRYAG | 1 cut(s) | 614 |
| SinI | GGWCC | 2 cut(s) | 283, 363 |
| SspMI | CTAG | 2 cut(s) | 393, 471 |
| StyD4I | CCNGG | 2 cut(s) | 424, 439 |
| TaaI | ACNGT | 2 cut(s) | 531, 618 |
| TaiI | ACGT | 1 cut(s) | 81 |
| TaqI | TCGA | 3 cut(s) | 81, 90, 359 |
| TaqII | GACCGA | 1 cut(s) | 94 |
| TscAI | CASTG | 2 cut(s) | 115, 534 |
| TseI | GCWGC | 3 cut(s) | 229, 275, 602 |
| TspDTI | ATGAA | 2 cut(s) | 53, 405 |
| TspGWI | ACGGA | 2 cut(s) | 560, 584 |
| TspRI | CASTG | 2 cut(s) | 115, 534 |
| VneI | GTGCAC | 1 cut(s) | 145 |
| VpaK11BI | GGWCC | 2 cut(s) | 283, 363 |
| XceI | RCATGY | 1 cut(s) | 596 |
| XmiI | GTMKAC | 2 cut(s) | 22, 503 |
| XspI | CTAG | 2 cut(s) | 393, 471 |
| Zsp2I | ATGCAT | 1 cut(s) | 387 |