RchiOBHm_Chr4g0423931

Major allergen Pru

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
49506368 .. 49506850
483 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39326

Sequence Viewer

Length: 441 bp
ATGGGTGTGTTCACATACGAAACCGAGTTCACCTCCGTCATCCCACCACCAAGATTGTACAAGGCATTTGCTGTGAAGAGTGCCGAAATCGTTCAAGGTGATGGAGGTGTTGGAACCGTCAACAAGATTCACCTCGGTGAAGGAAGCGAATACAGTTACGTGAAACACCAGATTGATGGACTTGACAAAGACAACTTTGTTTACAACTACAGCATAATCGAAGGGGATGCTATCGGAGACAAAGTTGAGAAAATCTCTTACGAGATCAAGTTGGTGGCATCTCCGAGTGGAGGCTCCATCATCAAGAGCACCAGCCACTACCATTGCAAAGGTGAGGTTGAAATCAAGGAAGAGCACGTCAAGGCCGGAAAAGAAAGAGCCGCTGGTTTGTTCAAGATCATTGAGAACTACCTTTTGGGAAACCCTGATGCCTACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.03

Weight (kDa)

5.52

Isoelectric Point (pI)

23.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 20 - 140 1.1e-13 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 381
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 3 cut(s) 95, 341, 394
AjiI CACGTC 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AleI CACNNNNGTG 1 cut(s) 135
Alw21I GWGCWC 2 cut(s) 311, 357
Alw26I GTCTC 1 cut(s) 231
AoxI GGCC 1 cut(s) 363
Asp700I GAANNNNTTC 1 cut(s) 90
AsuHPI GGTGA 5 cut(s) 22, 110, 122, 149, 344
Bbv12I GWGCWC 2 cut(s) 311, 357
BccI CCATC 3 cut(s) 95, 170, 305
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 439
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 358
BmiI GGNNCC 2 cut(s) 115, 295
BmsI GCATC 3 cut(s) 217, 287, 418
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 239, 271
BsaAI YACGTR 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 133
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse3DI GCAATG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 39, 232
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 322
BshFI GGCC 1 cut(s) 365
BsiHKAI GWGCWC 2 cut(s) 311, 357
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 311, 357
Bsp1407I TGTACA 1 cut(s) 57
Bsp143I GATC 2 cut(s) 264, 396
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 365
BspLI GGNNCC 2 cut(s) 115, 295
BspQI GCTCTTC 1 cut(s) 345
BsrDI GCAATG 1 cut(s) 322
BsrGI TGTACA 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 264, 396
Bst4CI ACNGT 2 cut(s) 118, 155
Bst6I CTCTTC 2 cut(s) 71, 345
BstAUI TGTACA 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 160
BstF5I GGATG 2 cut(s) 39, 232
BstKTI GATC 2 cut(s) 267, 399
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 2 cut(s) 264, 396
BstSFI CTRYAG 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuRI GGCC 1 cut(s) 365
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 2 cut(s) 39, 232
Csp6I GTAC 1 cut(s) 58
CspCI CAANNNNNGTGG 4 cut(s) 36, 71, 305, 340
CviJI RGCY 4 cut(s) 294, 315, 365, 380
CviKI_1 RGCY 4 cut(s) 294, 315, 365, 380
CviQI GTAC 1 cut(s) 58
DpnI GATC 2 cut(s) 266, 398
DpnII GATC 2 cut(s) 264, 396
Eam1104I CTCTTC 2 cut(s) 71, 345
EarI CTCTTC 2 cut(s) 71, 345
FaiI YATR 2 cut(s) 16, 215
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 26, 239
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 439
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 365
HapII CCGG 1 cut(s) 366
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 366
HphI GGTGA 5 cut(s) 22, 110, 122, 149, 344
Hpy166II GTNNAC 4 cut(s) 12, 30, 121, 202
Hpy188I TCNGA 2 cut(s) 236, 285
Hpy188III TCNNGA 2 cut(s) 304, 394
Hpy8I GTNNAC 4 cut(s) 12, 30, 121, 202
HpyAV CCTTC 2 cut(s) 134, 215
HpyCH4III ACNGT 2 cut(s) 118, 155
HpyCH4IV ACGT 2 cut(s) 159, 357
HpyCH4V TGCA 1 cut(s) 327
HpySE526I ACGT 2 cut(s) 159, 357
Kzo9I GATC 2 cut(s) 264, 396
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 4 cut(s) 182, 325, 369, 379
LweI GCATC 3 cut(s) 217, 287, 418
MaeI CTAG 1 cut(s) 439
MaeII ACGT 2 cut(s) 159, 357
MaeIII GTNAC 1 cut(s) 155
MalI GATC 2 cut(s) 266, 398
MboI GATC 2 cut(s) 264, 396
MboII GAAGA 2 cut(s) 88, 362
MhlI GDGCHC 2 cut(s) 311, 357
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 5 cut(s) 43, 98, 143, 284, 328
MroXI GAANNNNTTC 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 135
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 366
NdeII GATC 2 cut(s) 264, 396
NlaIV GGNNCC 2 cut(s) 115, 295
OliI CACNNNNGTG 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 90
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 382
Ppu21I YACGTR 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 115, 295
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 2 cut(s) 264, 396
SduI GDGCHC 2 cut(s) 311, 357
SetI ASST 9 cut(s) 35, 100, 109, 135, 162, 334, 339, 360, 414
SfaNI GCATC 3 cut(s) 217, 287, 418
SfcI CTRYAG 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 135
SsiI CCGC 1 cut(s) 381
SspMI CTAG 1 cut(s) 439
TaaI ACNGT 2 cut(s) 118, 155
TaiI ACGT 2 cut(s) 162, 360
TaqI TCGA 1 cut(s) 219
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 90
XspI CTAG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.