Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

71537739 .. 71539062

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0526500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGTAACTACAGATTCAGATTGTCAGATATGATACCAAATGCCTGGTTTTACAAGCTCAAAGATATGAGCAAAACCAGAAAACACAACACTACTTCTCCCAAGAAAAAACCACCAACCTCTACATTTCCTCCACAAAGAACCCATCTTTCACAAACCAGATACTCCTACTACATCACAACAGAACAACAACCCAACAGAGATGAAAAGTTCTACAACTCACCTACACACCCCCAAGCCTCAGATGCACATTTTCCAGAACAACCCAGAAGGTCGTCAACCAAAAGAAGCAGAAGGAAAGCTGTTTACAAGCCTTCACCTAAAAAACAAGTAACCTCTTCCTCTGTTTCCTCAGGCCATTGTAGCTGTCATGCCTCAATTCCTGAGTCTCCAGACTACTTTGGCTCATCTTCAAGTGAGAGAAATTCCCCTGAAACTCATGACTTTCATGAATTGATTCCATCCGAGTTTGAAAGCGACCAGTTGTGTGCTTCTGAGTTTGGCTCTTTTAACTGCAGAGTTAGTTCTTCAACTTCTGATACTATCATTGACATGAAAAAAGAAGGCTCAACCAAGAAAGTCCATGATGGGTTTGACATGATCTCAGAATTAGAGCTTCCTCGAATCTTGACAAAGCCAATGAAGTTTGATGATCATGATAAGGCCATTGAGTCCACCAAGTTAAGGAAAAGTACTTCATCCAAATTGAAGGAAACAAAAGGACACCGGTCTCTTTCTGTCAAGATAGTCAAGGAAGAAAGAAGCAGTGGTAGGACACAGAAGGATCAAAAAACCACAACTCTTTTCGTTCGAAACTCGTCTGCTTCTCCAACCGGCATAAGGCTTCGAGGAAACTCTCCAAGACTTGCAAGCAAGAAACTTCAGCAGCCCTGTGGTGCTAGAAAGAGTGTGTCAAAGAATAGAGGCATTTCGGACAGCTTTGCAGTTGTGAAGTCCTCATTTGACCCACAGAGGGACTTCAAGGACTCGATGAGGGAGATGATTGTGGAGAACAACATCAAGGAATCCAAAGATTTGGAGGACCTTCTTGCTTGTTATCTTTCACTCAACTCAAGGGAATACCATGATCTCATTGTCAAGGCTTTCGAGCAAATCTGGTTCGATATGGCTCACATCAAAATCTCAGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

384

Amino Acids

43.85

Weight (kDa)

9.57

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_binding_2	PF13724	1 - 37	1.8e-20	DNA-binding domain
Ovate	PF04844	320 - 376	2.7e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	792
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	866
AfaI	GTAC	1 cut(s)	694
AfiI	CCNNNNNNNGG	3 cut(s)	684, 840, 973
AgeI	ACCGGT	1 cut(s)	726
AgsI	TTSAA	5 cut(s)	414, 473, 531, 709, 982
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	5 cut(s)	58, 302, 366, 616, 939
AluI	AGCT	5 cut(s)	58, 302, 366, 616, 939
Alw26I	GTCTC	2 cut(s)	393, 735
AlwI	GGATC	1 cut(s)	792
AoxI	GGCC	2 cut(s)	355, 663
ApeKI	GCWGC	1 cut(s)	886
ApoI	RAATTY	1 cut(s)	424
AsiGI	ACCGGT	1 cut(s)	726
Asp700I	GAANNNNTTC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	1042
AsuHPI	GGTGA	2 cut(s)	213, 309
AsuII	TTCGAA	1 cut(s)	811
AvaII	GGWCC	1 cut(s)	1042
AxyI	CCTNAGG	1 cut(s)	352
BbvI	GCAGC	1 cut(s)	898
BccI	CCATC	3 cut(s)	153, 469, 581
BciT130I	CCWGG	1 cut(s)	46
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	393, 735
BfaI	CTAG	1 cut(s)	900
BfmI	CTRYAG	2 cut(s)	10, 514
BisI	GCNGC	1 cut(s)	887
BlsI	GCNGC	1 cut(s)	888
BmcAI	AGTACT	1 cut(s)	694
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	1042
BmgT120I	GGNCC	1 cut(s)	1042
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	235
BoxI	GACNNNNGTC	1 cut(s)	727
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	1 cut(s)	375
Bpu14I	TTCGAA	1 cut(s)	811
BpuEI	CTTGAG	1 cut(s)	1057
BsaI	GGTCTC	1 cut(s)	735
BsaWI	WCCGGW	1 cut(s)	726
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 115, 145
Bsc4I	CCNNNNNNNGG	3 cut(s)	684, 840, 973
Bse118I	RCCGGY	2 cut(s)	726, 833
Bse1I	ACTGG	1 cut(s)	481
Bse21I	CCTNAGG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	461, 698
BseLI	CCNNNNNNNGG	3 cut(s)	684, 840, 973
BseMII	CTCAG	5 cut(s)	255, 366, 375, 486, 618
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	898
BshFI	GGCC	2 cut(s)	357, 665
BshTI	ACCGGT	1 cut(s)	726
BsiSI	CCGG	2 cut(s)	727, 834
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	3 cut(s)	684, 840, 973
BsmAI	GTCTC	2 cut(s)	393, 735
BsmFI	GGGAC	1 cut(s)	989
BsnI	GGCC	2 cut(s)	357, 665
Bso31I	GGTCTC	1 cut(s)	735
Bsp119I	TTCGAA	1 cut(s)	811
Bsp143I	GATC	4 cut(s)	600, 652, 784, 1087
BspANI	GGCC	2 cut(s)	357, 665
BspCNI	CTCAG	5 cut(s)	254, 365, 376, 487, 617
BspHI	TCATGA	3 cut(s)	439, 448, 655
BspMAI	CTGCAG	1 cut(s)	518
BspPI	GGATC	1 cut(s)	792
BspT104I	TTCGAA	1 cut(s)	811
BspTNI	GGTCTC	1 cut(s)	735
BsrFI	RCCGGY	2 cut(s)	726, 833
BsrI	ACTGG	1 cut(s)	481
BssAI	RCCGGY	2 cut(s)	726, 833
BssMI	GATC	4 cut(s)	600, 652, 784, 1087
Bst2UI	CCWGG	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	343
BstBI	TTCGAA	1 cut(s)	811
BstC8I	GCNNGC	1 cut(s)	871
BstDEI	CTNAG	7 cut(s)	241, 352, 384, 495, 604, 1144, 1152
BstF5I	GGATG	2 cut(s)	461, 698
BstKTI	GATC	4 cut(s)	603, 655, 787, 1090
BstMAI	GTCTC	2 cut(s)	393, 735
BstMBI	GATC	4 cut(s)	600, 652, 784, 1087
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 363
BstNI	CCWGG	1 cut(s)	46
BstPAI	GACNNNNGTC	1 cut(s)	727
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	2 cut(s)	10, 514
BstV1I	GCAGC	1 cut(s)	898
BstXI	CCANNNNNNTGG	2 cut(s)	45, 1036
Bsu36I	CCTNAGG	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	357, 665
BtsCI	GGATG	2 cut(s)	461, 698
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	1 cut(s)	772
Cac8I	GCNNGC	1 cut(s)	871
CciI	TCATGA	3 cut(s)	439, 448, 655
Cfr10I	RCCGGY	2 cut(s)	726, 833
Cfr13I	GGNCC	1 cut(s)	1042
Csp6I	GTAC	1 cut(s)	693
CspAI	ACCGGT	1 cut(s)	726
CviAII	CATG	8 cut(s)	371, 440, 449, 553, 584, 598, 656, 1085
CviQI	GTAC	1 cut(s)	693
DdeI	CTNAG	7 cut(s)	241, 352, 384, 495, 604, 1144, 1152
DpnI	GATC	4 cut(s)	602, 654, 786, 1089
DpnII	GATC	4 cut(s)	600, 652, 784, 1087
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	735
Eco47I	GGWCC	1 cut(s)	1042
Eco57I	CTGAAG	1 cut(s)	866
Eco81I	CCTNAGG	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	1042
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	8 cut(s)	374, 443, 452, 556, 587, 601, 659, 1088
FaqI	GGGAC	1 cut(s)	989
FatI	CATG	8 cut(s)	370, 439, 448, 552, 583, 597, 655, 1084
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	1 cut(s)	887
FokI	GGATG	2 cut(s)	448, 685
Fsp4HI	GCNGC	1 cut(s)	887
FspBI	CTAG	1 cut(s)	900
GluI	GCNGC	1 cut(s)	887
GsuI	CTGGAG	1 cut(s)	375
HaeIII	GGCC	2 cut(s)	357, 665
HapII	CCGG	2 cut(s)	727, 834
Hin1II	CATG	8 cut(s)	374, 443, 452, 556, 587, 601, 659, 1088
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	8 cut(s)	15, 386, 457, 624, 671, 986, 1025, 1148
HpaII	CCGG	2 cut(s)	727, 834
HphI	GGTGA	2 cut(s)	213, 309
Hpy166II	GTNNAC	3 cut(s)	279, 307, 675
Hpy188I	TCNGA	9 cut(s)	20, 28, 244, 466, 496, 538, 607, 934, 1147
Hpy188III	TCNNGA	8 cut(s)	257, 383, 392, 440, 449, 628, 656, 742
Hpy8I	GTNNAC	3 cut(s)	279, 307, 675
HpyAV	CCTTC	7 cut(s)	264, 288, 324, 557, 703, 775, 1055
HpyCH4V	TGCA	4 cut(s)	248, 516, 869, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 363
HpyF3I	CTNAG	7 cut(s)	241, 352, 384, 495, 604, 1144, 1152
Hsp92II	CATG	8 cut(s)	374, 443, 452, 556, 587, 601, 659, 1088
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	4 cut(s)	600, 652, 784, 1087
Lsp1109I	GCAGC	1 cut(s)	898
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	900
MaeIII	GTNAC	2 cut(s)	5, 331
MalI	GATC	4 cut(s)	602, 654, 786, 1089
MboI	GATC	4 cut(s)	600, 652, 784, 1087
MboII	GAAGA	4 cut(s)	330, 402, 519, 767
MluCI	AATT	5 cut(s)	378, 424, 452, 608, 704
MlyI	GAGTC	3 cut(s)	395, 680, 980
MmeI	TCCRAC	1 cut(s)	854
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	2 cut(s)	510, 683
MslI	CAYNNNNRTG	1 cut(s)	551
MspI	CCGG	2 cut(s)	727, 834
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	245, 363
NdeII	GATC	4 cut(s)	600, 652, 784, 1087
NlaIII	CATG	8 cut(s)	374, 443, 452, 556, 587, 601, 659, 1088
NspV	TTCGAA	1 cut(s)	811
PagI	TCATGA	3 cut(s)	439, 448, 655
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	5 cut(s)	15, 457, 624, 1025, 1148
PinAI	ACCGGT	1 cut(s)	726
PkrI	GCNGC	1 cut(s)	888
PleI	GAGTC	3 cut(s)	394, 679, 980
PpsI	GAGTC	3 cut(s)	394, 679, 980
PpuMI	RGGWCCY	1 cut(s)	1042
PshAI	GACNNNNGTC	1 cut(s)	727
Psp5II	RGGWCCY	1 cut(s)	1042
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	1042
PspPPI	RGGWCCY	1 cut(s)	1042
PstI	CTGCAG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	694
RsaNI	GTAC	1 cut(s)	693
RseI	CAYNNNNRTG	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	510, 683
SatI	GCNGC	1 cut(s)	887
Sau3AI	GATC	4 cut(s)	600, 652, 784, 1087
Sau96I	GGNCC	1 cut(s)	1042
ScaI	AGTACT	1 cut(s)	694
SchI	GAGTC	3 cut(s)	395, 680, 980
ScrFI	CCNGG	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	2 cut(s)	10, 514
SfuI	TTCGAA	1 cut(s)	811
SinI	GGWCC	1 cut(s)	1042
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	1072
SmoI	CTYRAG	1 cut(s)	1072
Sse9I	AATT	5 cut(s)	378, 424, 452, 608, 704
SspMI	CTAG	1 cut(s)	900
StyD4I	CCNGG	1 cut(s)	44
TaqI	TCGA	6 cut(s)	622, 811, 847, 989, 1107, 1122
TasI	AATT	5 cut(s)	378, 424, 452, 608, 704
TatI	WGTACW	1 cut(s)	692
TfiI	GAWTC	5 cut(s)	15, 457, 624, 1025, 1148
Tru1I	TTAA	2 cut(s)	510, 683
Tru9I	TTAA	2 cut(s)	510, 683
TscAI	CASTG	1 cut(s)	772
TseI	GCWGC	1 cut(s)	886
TspDTI	ATGAA	6 cut(s)	219, 437, 465, 569, 656, 687
TspRI	CASTG	1 cut(s)	772
VpaK11BI	GGWCC	1 cut(s)	1042
XapI	RAATTY	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	1 cut(s)	900
ZrmI	AGTACT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.