Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

59091949 .. 59093279

Gene Structure 1331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0466600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCCGGTCATTAATTACGTACCCCAACTCGCTTCCACCATTCTTTCTCAGAACAAAGTCACAAACGAAACAAAAATCAACCTCAAAGGAATTGCAATTGGGAATGCTTGGATCGATTATATTACTGGGAGCTTGGGTTGGTTTGATTATTTGTGGAGACATGCTCTGAACTCTGACGAAAGTACGAAACAAATGCCGGAATACACCAATACTGTAACTTTACCAGTTCTGTCAGACAATGAGTATGGTTACATTGATCGATATAACATCTATGCTCCTTTTTGCAACAAATCGTCAGCCGCGGCCTCAACTGGTTCAGTTAATGATTTTGATCCATGCTCAAACAACTATGTCCAGACCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAACCCTACAGTATGGTTAGCTTGCAGTGGAGACATTGATTCGGTAGTATCAGTGACAGCTACCGGGTACGCCATAAACACCCTCTACTTATCAATTGAGACTGCATGGAGGCCATGGTACTCTGATGATGAAGAGGTTGGAGGATATGTGGTTGGATACATAGGGCTGAAATTTGCGACGGTAAGAGGAGCTGGCCATGAGGTTCCCAGCTACCAACCACAGCGATCACTCACCTTGTTCTTGTTGAGAATGTGTATAAATATAACTCCCACATTGGAAAAATATAACTTTGCTTATGGGTTTATAAGGGTTTGGGCCACTCCATCCATTGCCAATTGGTTTTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

249

Amino Acids

28.02

Weight (kDa)

5.01

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	6 - 145	1.1e-22	Serine carboxypeptidase
Peptidase_S10	PF00450	141 - 213	1.3e-17	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	704
AccII	CGCG	1 cut(s)	302
AciI	CCGC	2 cut(s)	300, 302
AclWI	GGATC	2 cut(s)	119, 326
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	569
AfaI	GTAC	4 cut(s)	21, 184, 467, 518
AflII	CTTAAG	1 cut(s)	371
AluBI	AGCT	6 cut(s)	132, 389, 419, 458, 590, 609
AluI	AGCT	6 cut(s)	132, 389, 419, 458, 590, 609
Alw26I	GTCTC	3 cut(s)	151, 423, 491
AlwI	GGATC	2 cut(s)	119, 326
AoxI	GGCC	4 cut(s)	303, 509, 592, 714
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	569
AseI	ATTAAT	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	714
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	1 cut(s)	622
BalI	TGGCCA	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	1 cut(s)	730
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	151, 423, 491
BfmI	CTRYAG	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	3 cut(s)	300, 303, 387
BlsI	GCNGC	3 cut(s)	301, 304, 388
Bme1390I	CCNGG	1 cut(s)	463
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	463
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpuMI	CCSGG	1 cut(s)	463
Bsa29I	ATCGAT	2 cut(s)	114, 259
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	300, 512
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 531, 561
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	3 cut(s)	130, 224, 316
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	1 cut(s)	330
BseCI	ATCGAT	2 cut(s)	114, 259
BseDI	CCNNGG	2 cut(s)	300, 512
BseGI	GGATG	2 cut(s)	722, 750
BseJI	GATNNNNATC	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	726
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	3 cut(s)	130, 224, 316
BseRI	GAGGAG	1 cut(s)	600
BseXI	GCAGC	1 cut(s)	398
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	4 cut(s)	305, 511, 594, 716
BshVI	ATCGAT	2 cut(s)	114, 259
BsiSI	CCGG	3 cut(s)	5, 197, 462
BsmAI	GTCTC	3 cut(s)	151, 423, 491
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	4 cut(s)	305, 511, 594, 716
Bsp143I	GATC	4 cut(s)	111, 256, 331, 623
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	2 cut(s)	300, 302
BspANI	GGCC	4 cut(s)	305, 511, 594, 716
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	2 cut(s)	114, 259
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	603
BspPI	GGATC	2 cut(s)	119, 326
BspQI	GCTCTTC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	130, 224, 316
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	300, 512
BssMI	GATC	4 cut(s)	111, 256, 331, 623
BssT1I	CCWWGG	1 cut(s)	512
Bst4CI	ACNGT	3 cut(s)	214, 409, 580
Bst6I	CTCTTC	2 cut(s)	396, 525
BstAFI	CTTAAG	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	384, 421, 592
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	2 cut(s)	300, 512
BstF5I	GGATG	2 cut(s)	722, 750
BstFNI	CGCG	1 cut(s)	302
BstKTI	GATC	4 cut(s)	114, 259, 334, 626
BstMAI	GTCTC	3 cut(s)	151, 423, 491
BstMBI	GATC	4 cut(s)	111, 256, 331, 623
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	461
BstSFI	CTRYAG	1 cut(s)	405
BstSNI	TACGTA	1 cut(s)	19
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	398
Bsu15I	ATCGAT	2 cut(s)	114, 259
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	305, 511, 594, 716
BsuTUI	ATCGAT	2 cut(s)	114, 259
BtgI	CCRYGG	2 cut(s)	300, 512
BtsCI	GGATG	2 cut(s)	722, 750
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	430, 456
Cac8I	GCNNGC	3 cut(s)	384, 421, 592
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	714
Cfr42I	CCGCGG	1 cut(s)	303
ClaI	ATCGAT	2 cut(s)	114, 259
Csp6I	GTAC	4 cut(s)	20, 183, 466, 517
CviAII	CATG	6 cut(s)	161, 336, 395, 504, 513, 596
CviQI	GTAC	4 cut(s)	20, 183, 466, 517
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	4 cut(s)	113, 258, 333, 625
DpnII	GATC	4 cut(s)	111, 256, 331, 623
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	2 cut(s)	396, 525
EarI	CTCTTC	2 cut(s)	396, 525
Eco105I	TACGTA	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	6 cut(s)	164, 339, 398, 507, 516, 599
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	6 cut(s)	160, 335, 394, 503, 512, 595
Fnu4HI	GCNGC	3 cut(s)	300, 303, 387
FokI	GGATG	1 cut(s)	709
Fsp4HI	GCNGC	3 cut(s)	300, 303, 387
GluI	GCNGC	3 cut(s)	300, 303, 387
GsaI	CCCAGC	1 cut(s)	609
HaeIII	GGCC	4 cut(s)	305, 511, 594, 716
HapII	CCGG	3 cut(s)	5, 197, 462
Hin1II	CATG	6 cut(s)	164, 339, 398, 507, 516, 599
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	3 cut(s)	5, 197, 462
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	5 cut(s)	51, 168, 175, 235, 523
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	1 cut(s)	580
HpyCH4III	ACNGT	3 cut(s)	214, 409, 580
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	5 cut(s)	95, 285, 382, 423, 503
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	164, 339, 398, 507, 516, 599
KspI	CCGCGG	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	111, 256, 331, 623
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	3 cut(s)	129, 280, 587
LpnPI	CCDG	9 cut(s)	18, 111, 210, 237, 297, 368, 475, 576, 619
Lsp1109I	GCAGC	1 cut(s)	398
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	4 cut(s)	58, 214, 248, 451
MalI	GATC	4 cut(s)	113, 258, 333, 625
MboI	GATC	4 cut(s)	111, 256, 331, 623
MboII	GAAGA	2 cut(s)	383, 542
MfeI	CAATTG	3 cut(s)	96, 492, 733
MlsI	TGGCCA	1 cut(s)	594
MluCI	AATT	6 cut(s)	13, 90, 96, 492, 569, 733
MluNI	TGGCCA	1 cut(s)	594
MmeI	TCCRAC	2 cut(s)	517, 532
MnlI	CCTC	9 cut(s)	92, 316, 370, 491, 501, 526, 533, 578, 592
Mox20I	TGGCCA	1 cut(s)	594
MscI	TGGCCA	1 cut(s)	594
MseI	TTAA	3 cut(s)	12, 321, 372
Msp20I	TGGCCA	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	302
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	3 cut(s)	5, 197, 462
MspR9I	CCNGG	1 cut(s)	463
MunI	CAATTG	3 cut(s)	96, 492, 733
Mva1269I	GAATGC	1 cut(s)	109
MvnI	CGCG	1 cut(s)	302
NciI	CCSGG	1 cut(s)	463
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	4 cut(s)	111, 256, 331, 623
NlaIII	CATG	6 cut(s)	164, 339, 398, 507, 516, 599
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	2 cut(s)	58, 451
NspI	RCATGY	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	396
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	3 cut(s)	301, 304, 388
Ppu21I	YACGTR	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	12
PsiI	TTATAA	1 cut(s)	704
PspFI	CCCAGC	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	714
RsaI	GTAC	4 cut(s)	21, 184, 467, 518
RsaNI	GTAC	4 cut(s)	20, 183, 466, 517
SacII	CCGCGG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	396
SaqAI	TTAA	3 cut(s)	12, 321, 372
SatI	GCNGC	3 cut(s)	300, 303, 387
Sau3AI	GATC	4 cut(s)	111, 256, 331, 623
Sau96I	GGNCC	1 cut(s)	714
ScrFI	CCNGG	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	405
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SnaBI	TACGTA	1 cut(s)	19
Sse9I	AATT	6 cut(s)	13, 90, 96, 492, 569, 733
SsiI	CCGC	2 cut(s)	300, 302
StyD4I	CCNGG	1 cut(s)	461
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	3 cut(s)	214, 409, 580
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	114, 259
TasI	AATT	6 cut(s)	13, 90, 96, 492, 569, 733
TauI	GCSGC	2 cut(s)	302, 305
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	3 cut(s)	12, 321, 372
Tru9I	TTAA	3 cut(s)	12, 321, 372
TscAI	CASTG	2 cut(s)	430, 456
TseFI	GTSAC	2 cut(s)	58, 451
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	2 cut(s)	58, 451
TspDTI	ATGAA	2 cut(s)	383, 543
TspRI	CASTG	2 cut(s)	430, 456
Vha464I	CTTAAG	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	12
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.