Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

23310025 .. 23314935

Gene Structure 4911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTTGGGATTTGATCTATTGGCTACTCTGCTTCTGCATCGACATTGCCCTCTTCGCTTCAAGCCTTTATCAGTATGTGATGCTAACGGATTTGGAGGCAGACTATATCAATCCGTTTGAATTATCGACTCGCATCAATCAATTGGTTGTCCCTGAGTTCATTGTGCATGGAGTGTTCTGTGCTCTGTTCCTCCTGGCACAGCGTTGGTTCATGTTCCTCTTCACGGTCCCCCTTACTTACTATATCGTGATGCTGTTTGTAAAACAAAAGCATCTTATTGATGTCACTGAAGTATTCAGGGTTCTTAATACTGAGAAGAAGTGCCGGCTTGTCAAGCTTGGTGTCTACTTTTGTCTCCTCGCTATAATCATTATCAGAATTCTCATTTCTGCAATATTTGTGCCGTGGTCCGGATCTGAAGAATTAGACATTCGCGCCTCTTTTCTAGAATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0022607 GO:0036094 GO:0042732 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043933 GO:0044085 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046983 GO:0048037 GO:0048040 GO:0050662 GO:0051259 GO:0051262 GO:0051287 GO:0065003 GO:0070403 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

152

Amino Acids

17.91

Weight (kDa)

5.29

Isoelectric Point (pI)

26.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cornichon	PF03311	6 - 124	2.1e-36	Cornichon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	438
AccIII	TCCGGA	1 cut(s)	413
AclWI	GGATC	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	381, 452
AcuI	CTGAAG	2 cut(s)	312, 441
AfiI	CCNNNNNNNGG	2 cut(s)	226, 413
AgsI	TTSAA	2 cut(s)	63, 122
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw21I	GWGCWC	1 cut(s)	187
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	424
Aor13HI	TCCGGA	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	381, 452
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	229, 411
AvaII	GGWCC	2 cut(s)	229, 411
Bbv12I	GWGCWC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	449
Bme1390I	CCNGG	1 cut(s)	197
Bme18I	GGWCC	2 cut(s)	229, 411
BmgT120I	GGNCC	2 cut(s)	229, 411
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	5 cut(s)	48, 72, 144, 243, 283
BsaJI	CCNNGG	1 cut(s)	407
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 413
Bse118I	RCCGGY	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	2 cut(s)	226, 413
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	147, 306
BseRI	GAGGAG	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	187
BsiSI	CCGG	2 cut(s)	328, 414
BslFI	GGGAC	2 cut(s)	137, 215
BslI	CCNNNNNNNGG	2 cut(s)	226, 413
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	137, 215
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp13I	TCCGGA	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	15, 416
BspCNI	CTCAG	2 cut(s)	148, 307
BspEI	TCCGGA	1 cut(s)	413
BspFNI	CGCG	1 cut(s)	438
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	2 cut(s)	15, 416
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	59, 227
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	156, 315
BstDSI	CCRYGG	1 cut(s)	407
BstFNI	CGCG	1 cut(s)	438
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	2 cut(s)	18, 419
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	15, 416
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 337
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstUI	CGCG	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	329
CfoI	GCGC	1 cut(s)	440
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	229, 411
CviAII	CATG	2 cut(s)	170, 214
CviJI	RGCY	5 cut(s)	5, 25, 66, 331, 340
CviKI_1	RGCY	5 cut(s)	5, 25, 66, 331, 340
DdeI	CTNAG	2 cut(s)	156, 315
DpnI	GATC	2 cut(s)	17, 418
DpnII	GATC	2 cut(s)	15, 416
Eam1104I	CTCTTC	2 cut(s)	59, 227
EarI	CTCTTC	2 cut(s)	59, 227
Eco47I	GGWCC	2 cut(s)	229, 411
Eco57I	CTGAAG	2 cut(s)	312, 441
EcoRI	GAATTC	2 cut(s)	381, 452
EcoRII	CCWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	173, 217
FaiI	YATR	6 cut(s)	78, 108, 171, 215, 246, 368
FaqI	GGGAC	2 cut(s)	137, 215
FatI	CATG	2 cut(s)	169, 213
FblI	GTMKAC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	439
HapII	CCGG	2 cut(s)	328, 414
HhaI	GCGC	1 cut(s)	440
Hin1II	CATG	2 cut(s)	173, 217
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	2 cut(s)	328, 414
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	2 cut(s)	380, 421
Hpy188III	TCNNGA	3 cut(s)	250, 414, 449
Hpy8I	GTNNAC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	39, 169, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 337
HpyF3I	CTNAG	2 cut(s)	156, 315
Hsp92II	CATG	2 cut(s)	173, 217
HspAI	GCGC	1 cut(s)	438
Kpn2I	TCCGGA	1 cut(s)	413
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	15, 416
LpnPI	CCDG	6 cut(s)	168, 182, 209, 286, 341, 427
LweI	GCATC	5 cut(s)	48, 72, 144, 243, 283
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	2 cut(s)	17, 418
MboI	GATC	2 cut(s)	15, 416
MboII	GAAGA	4 cut(s)	46, 214, 331, 434
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	416
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	5 cut(s)	122, 143, 381, 425, 452
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	6 cut(s)	62, 91, 203, 230, 371, 451
MroI	TCCGGA	1 cut(s)	413
MroNI	GCCGGC	1 cut(s)	327
MseI	TTAA	1 cut(s)	309
MspI	CCGG	2 cut(s)	328, 414
MspR9I	CCNGG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	56, 337
NaeI	GCCGGC	1 cut(s)	329
NdeII	GATC	2 cut(s)	15, 416
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	173, 217
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	329
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	229, 411
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PsuI	RGATCY	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	15, 416
Sau96I	GGNCC	2 cut(s)	229, 411
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	1 cut(s)	342
SfaNI	GCATC	5 cut(s)	48, 72, 144, 243, 283
SinI	GGWCC	2 cut(s)	229, 411
Sse9I	AATT	5 cut(s)	122, 143, 381, 425, 452
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	42, 128
TasI	AATT	5 cut(s)	122, 143, 381, 425, 452
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	151, 202
TspGWI	ACGGA	2 cut(s)	104, 105
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	229, 411
XapI	RAATTY	2 cut(s)	381, 452
XbaI	TCTAGA	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.