Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 705 |
| AciI | CCGC | 1 cut(s) | 259 |
| AcsI | RAATTY | 3 cut(s) | 115, 325, 609 |
| AfaI | GTAC | 1 cut(s) | 752 |
| AgsI | TTSAA | 5 cut(s) | 26, 57, 269, 316, 406 |
| AjnI | CCWGG | 2 cut(s) | 231, 371 |
| AjuI | GAANNNNNNNTTGG | 3 cut(s) | 106, 138, 805 |
| AluBI | AGCT | 3 cut(s) | 29, 593, 655 |
| AluI | AGCT | 3 cut(s) | 29, 593, 655 |
| ApeKI | GCWGC | 1 cut(s) | 395 |
| ApoI | RAATTY | 3 cut(s) | 115, 325, 609 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 135, 167 |
| BanII | GRGCYC | 1 cut(s) | 763 |
| BbvCI | CCTCAGC | 1 cut(s) | 594 |
| BbvI | GCAGC | 1 cut(s) | 382 |
| BccI | CCATC | 3 cut(s) | 50, 162, 361 |
| BciT130I | CCWGG | 2 cut(s) | 233, 373 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BfaI | CTAG | 3 cut(s) | 357, 366, 378 |
| BglII | AGATCT | 1 cut(s) | 490 |
| BisI | GCNGC | 1 cut(s) | 396 |
| BlsI | GCNGC | 1 cut(s) | 397 |
| Bme1390I | CCNGG | 2 cut(s) | 233, 373 |
| BmrFI | CCNGG | 2 cut(s) | 233, 373 |
| BmsI | GCATC | 1 cut(s) | 553 |
| Bpu10I | CCTNAGC | 1 cut(s) | 594 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 716, 746 |
| Bse1I | ACTGG | 3 cut(s) | 470, 504, 640 |
| BseBI | CCWGG | 2 cut(s) | 233, 373 |
| BseGI | GGATG | 3 cut(s) | 38, 42, 568 |
| BseMII | CTCAG | 3 cut(s) | 462, 585, 732 |
| BseNI | ACTGG | 3 cut(s) | 470, 504, 640 |
| BseXI | GCAGC | 1 cut(s) | 382 |
| Bsp1286I | GDGCHC | 1 cut(s) | 763 |
| Bsp143I | GATC | 2 cut(s) | 334, 490 |
| BspACI | CCGC | 1 cut(s) | 259 |
| BspCNI | CTCAG | 3 cut(s) | 463, 586, 731 |
| BspHI | TCATGA | 1 cut(s) | 337 |
| BsrI | ACTGG | 3 cut(s) | 470, 504, 640 |
| BssMI | GATC | 2 cut(s) | 334, 490 |
| Bst2UI | CCWGG | 2 cut(s) | 233, 373 |
| BstC8I | GCNNGC | 3 cut(s) | 243, 527, 591 |
| BstDEI | CTNAG | 4 cut(s) | 246, 471, 594, 718 |
| BstF5I | GGATG | 3 cut(s) | 38, 42, 568 |
| BstKTI | GATC | 2 cut(s) | 337, 493 |
| BstMBI | GATC | 2 cut(s) | 334, 490 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 242, 661 |
| BstNI | CCWGG | 2 cut(s) | 233, 373 |
| BstNSI | RCATGY | 1 cut(s) | 529 |
| BstSCI | CCNGG | 2 cut(s) | 231, 371 |
| BstV1I | GCAGC | 1 cut(s) | 382 |
| BstX2I | RGATCY | 1 cut(s) | 490 |
| BstYI | RGATCY | 1 cut(s) | 490 |
| BtsCI | GGATG | 3 cut(s) | 38, 42, 568 |
| BtsIMutI | CAGTG | 1 cut(s) | 497 |
| Cac8I | GCNNGC | 3 cut(s) | 243, 527, 591 |
| CciI | TCATGA | 1 cut(s) | 337 |
| CsiI | ACCWGGT | 1 cut(s) | 371 |
| Csp6I | GTAC | 1 cut(s) | 751 |
| CviAII | CATG | 2 cut(s) | 338, 526 |
| CviJI | RGCY | 8 cut(s) | 5, 29, 194, 236, 593, 655, 711, 761 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 29, 194, 236, 593, 655, 711, 761 |
| CviQI | GTAC | 1 cut(s) | 751 |
| DdeI | CTNAG | 4 cut(s) | 246, 471, 594, 718 |
| DpnI | GATC | 2 cut(s) | 336, 492 |
| DpnII | GATC | 2 cut(s) | 334, 490 |
| EciI | GGCGGA | 1 cut(s) | 274 |
| Eco24I | GRGCYC | 1 cut(s) | 763 |
| EcoRII | CCWGG | 2 cut(s) | 231, 371 |
| EcoT38I | GRGCYC | 1 cut(s) | 763 |
| FaeI | CATG | 2 cut(s) | 341, 529 |
| FatI | CATG | 2 cut(s) | 337, 525 |
| FauNDI | CATATG | 1 cut(s) | 755 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 1 cut(s) | 396 |
| FokI | GGATG | 3 cut(s) | 25, 29, 575 |
| FriOI | GRGCYC | 1 cut(s) | 763 |
| Fsp4HI | GCNGC | 1 cut(s) | 396 |
| FspBI | CTAG | 3 cut(s) | 357, 366, 378 |
| GluI | GCNGC | 1 cut(s) | 396 |
| Hin1II | CATG | 2 cut(s) | 341, 529 |
| HincII | GTYRAC | 1 cut(s) | 15 |
| HindII | GTYRAC | 1 cut(s) | 15 |
| HinfI | GANTC | 4 cut(s) | 22, 94, 170, 503 |
| Hpy166II | GTNNAC | 4 cut(s) | 15, 182, 687, 724 |
| Hpy188I | TCNGA | 1 cut(s) | 304 |
| Hpy188III | TCNNGA | 2 cut(s) | 98, 338 |
| Hpy8I | GTNNAC | 4 cut(s) | 15, 182, 687, 724 |
| HpyAV | CCTTC | 2 cut(s) | 313, 581 |
| HpyCH4V | TGCA | 4 cut(s) | 61, 291, 497, 566 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 242, 661 |
| HpyF3I | CTNAG | 4 cut(s) | 246, 471, 594, 718 |
| Hsp92II | CATG | 2 cut(s) | 341, 529 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 2 cut(s) | 334, 490 |
| LpnPI | CCDG | 9 cut(s) | 180, 218, 245, 358, 385, 451, 485, 603, 621 |
| Lsp1109I | GCAGC | 1 cut(s) | 382 |
| LweI | GCATC | 1 cut(s) | 553 |
| MabI | ACCWGGT | 1 cut(s) | 371 |
| MaeI | CTAG | 3 cut(s) | 357, 366, 378 |
| MaeIII | GTNAC | 3 cut(s) | 31, 548, 631 |
| MalI | GATC | 2 cut(s) | 336, 492 |
| MboI | GATC | 2 cut(s) | 334, 490 |
| MboII | GAAGA | 2 cut(s) | 289, 328 |
| MflI | RGATCY | 1 cut(s) | 490 |
| MhlI | GDGCHC | 1 cut(s) | 763 |
| MluCI | AATT | 6 cut(s) | 115, 163, 207, 325, 426, 609 |
| MlyI | GAGTC | 1 cut(s) | 497 |
| MnlI | CCTC | 2 cut(s) | 589, 727 |
| MseI | TTAA | 5 cut(s) | 210, 486, 693, 765, 786 |
| MspA1I | CMGCKG | 1 cut(s) | 593 |
| MspR9I | CCNGG | 2 cut(s) | 233, 373 |
| MvaI | CCWGG | 2 cut(s) | 233, 373 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 242, 661 |
| NdeI | CATATG | 1 cut(s) | 755 |
| NdeII | GATC | 2 cut(s) | 334, 490 |
| NlaIII | CATG | 2 cut(s) | 341, 529 |
| NspI | RCATGY | 1 cut(s) | 529 |
| PaeI | GCATGC | 1 cut(s) | 529 |
| PagI | TCATGA | 1 cut(s) | 337 |
| PfeI | GAWTC | 3 cut(s) | 22, 94, 170 |
| PkrI | GCNGC | 1 cut(s) | 397 |
| PleI | GAGTC | 1 cut(s) | 497 |
| PpsI | GAGTC | 1 cut(s) | 497 |
| PsiI | TTATAA | 1 cut(s) | 705 |
| Psp6I | CCWGG | 2 cut(s) | 231, 371 |
| PspGI | CCWGG | 2 cut(s) | 231, 371 |
| PsuI | RGATCY | 1 cut(s) | 490 |
| PvuII | CAGCTG | 1 cut(s) | 593 |
| RsaI | GTAC | 1 cut(s) | 752 |
| RsaNI | GTAC | 1 cut(s) | 751 |
| SaqAI | TTAA | 5 cut(s) | 210, 486, 693, 765, 786 |
| SatI | GCNGC | 1 cut(s) | 396 |
| Sau3AI | GATC | 2 cut(s) | 334, 490 |
| SchI | GAGTC | 1 cut(s) | 497 |
| ScrFI | CCNGG | 2 cut(s) | 233, 373 |
| SduI | GDGCHC | 1 cut(s) | 763 |
| SexAI | ACCWGGT | 1 cut(s) | 371 |
| SfaNI | GCATC | 1 cut(s) | 553 |
| SphI | GCATGC | 1 cut(s) | 529 |
| Sse9I | AATT | 6 cut(s) | 115, 163, 207, 325, 426, 609 |
| SsiI | CCGC | 1 cut(s) | 259 |
| SspI | AATATT | 1 cut(s) | 311 |
| SspMI | CTAG | 3 cut(s) | 357, 366, 378 |
| StyD4I | CCNGG | 2 cut(s) | 231, 371 |
| TaqI | TCGA | 1 cut(s) | 516 |
| TasI | AATT | 6 cut(s) | 115, 163, 207, 325, 426, 609 |
| TatI | WGTACW | 1 cut(s) | 750 |
| TfiI | GAWTC | 3 cut(s) | 22, 94, 170 |
| Tru1I | TTAA | 5 cut(s) | 210, 486, 693, 765, 786 |
| Tru9I | TTAA | 5 cut(s) | 210, 486, 693, 765, 786 |
| TscAI | CASTG | 1 cut(s) | 504 |
| TseI | GCWGC | 1 cut(s) | 395 |
| TspDTI | ATGAA | 3 cut(s) | 122, 242, 570 |
| TspRI | CASTG | 1 cut(s) | 504 |
| XapI | RAATTY | 3 cut(s) | 115, 325, 609 |
| XceI | RCATGY | 1 cut(s) | 529 |
| XspI | CTAG | 3 cut(s) | 357, 366, 378 |