Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

11035140 .. 11036737

Gene Structure 1598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0071700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCAACTTCCATTTCTGCAACTGGGTTCCAAGGAAACTTGAGCTCCTCCTTCCATGGAAGTTGGGGAAGTTCGATTGCGGGTGAAGATTATAGCATGCTAGCCAAGTCAGTAAAAACCCAAGTGAGAGTTGCAAAGCCAAGCAGAGCACAACCCATGATGAAGAACATCAATGAAGGTAAGGGTTTGTTTGCACCTATTGTGGTTGTTGCAAGAGACATCATTGGGAAGAAGCGCTTCAATCAACTTAGGGGAAAGGCAATTGCTTTGCACTCTCAGGTAATCACCGAGTTCTGCAAATCCATAGGAGCTGATGCAAAGCAAAGGCAAGGGCTCATTCGGCTGGCAAAGAAGAATGGAGAAAAGCTAGGGTTCCTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

127

Amino Acids

13.65

Weight (kDa)

10.53

Isoelectric Point (pI)

21.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	80
AfeI	AGCGCT	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	3 cut(s)	45, 311, 367
AluI	AGCT	3 cut(s)	45, 311, 367
Alw21I	GWGCWC	2 cut(s)	47, 151
Alw26I	GTCTC	1 cut(s)	210
Aor51HI	AGCGCT	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	95, 277
AsuNHI	GCTAGC	1 cut(s)	100
BanII	GRGCYC	2 cut(s)	47, 336
Bbv12I	GWGCWC	2 cut(s)	47, 151
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	101, 368
BfoI	RGCGCY	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	29, 374
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	304
BmtI	GCTAGC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	31, 55
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bse1I	ACTGG	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	31, 55
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	47, 151
BsmAI	GTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	3 cut(s)	47, 151, 336
Bsp19I	CCATGG	1 cut(s)	55
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	29, 374
BspOI	GCTAGC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	31, 55
BssT1I	CCWWGG	2 cut(s)	31, 55
BstC8I	GCNNGC	3 cut(s)	98, 102, 345
BstDEI	CTNAG	2 cut(s)	248, 276
BstDSI	CCRYGG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstMAI	GTCTC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	98, 102, 345
CfoI	GCGC	1 cut(s)	237
CviAII	CATG	4 cut(s)	56, 97, 157, 381
CviJI	RGCY	7 cut(s)	45, 104, 139, 311, 334, 343, 367
CviKI_1	RGCY	7 cut(s)	45, 104, 139, 311, 334, 343, 367
DdeI	CTNAG	2 cut(s)	248, 276
Ecl136II	GAGCTC	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	31, 55
Eco24I	GRGCYC	2 cut(s)	47, 336
Eco47III	AGCGCT	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	45
EcoICRI	GAGCTC	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	31, 55
EcoT38I	GRGCYC	2 cut(s)	47, 336
ErhI	CCWWGG	2 cut(s)	31, 55
FaeI	CATG	4 cut(s)	59, 100, 160, 384
FaiI	YATR	6 cut(s)	57, 93, 98, 158, 305, 382
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FatI	CATG	4 cut(s)	55, 96, 156, 380
FauI	CCCGC	1 cut(s)	73
FriOI	GRGCYC	2 cut(s)	47, 336
FspBI	CTAG	2 cut(s)	101, 368
GlaI	GCGC	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	238
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	59, 100, 160, 384
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HphI	GGTGA	2 cut(s)	95, 277
HpyAV	CCTTC	2 cut(s)	61, 170
HpyCH4V	TGCA	8 cut(s)	20, 134, 194, 212, 271, 297, 317, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	248, 276
Hsp92II	CATG	4 cut(s)	59, 100, 160, 384
HspAI	GCGC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	50, 308
LpnPI	CCDG	3 cut(s)	9, 263, 329
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	101, 368
MboII	GAAGA	4 cut(s)	98, 175, 241, 364
MfeI	CAATTG	1 cut(s)	261
MhlI	GDGCHC	3 cut(s)	47, 151, 336
MluCI	AATT	1 cut(s)	261
MnlI	CCTC	1 cut(s)	58
MroXI	GAANNNNTTC	1 cut(s)	236
MunI	CAATTG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	340
NcoI	CCATGG	1 cut(s)	55
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	59, 100, 160, 384
NlaIV	GGNNCC	2 cut(s)	29, 374
NspI	RCATGY	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	29, 374
SacI	GAGCTC	1 cut(s)	47
SduI	GDGCHC	3 cut(s)	47, 151, 336
SetI	ASST	6 cut(s)	47, 181, 199, 282, 313, 369
SfaNI	GCATC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	1 cut(s)	261
SsiI	CCGC	1 cut(s)	80
SspMI	CTAG	2 cut(s)	101, 368
SstI	GAGCTC	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	31, 55
TaqI	TCGA	1 cut(s)	74
TasI	AATT	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	176, 189
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	2 cut(s)	101, 368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.