Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

13986644 .. 13986949

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGGATGATGGTGAAGGCAGAAATATGCAACGAATCGATCGGTTCTTGTCAAGGCATCGACTGCAACCAAGTCTGCGTCAACAAACATCCCGGTGGCTCCGGCACATGTGATCAAACAAACACATGCAATTGCTATTTCGACTGTCCACCAAGAAAGACATGCAATGCCGGCTTGGGTTATTGCAGTGCCAGTTGTAATGACCAGTGTTGTGCTCAAAACTGTGCAAGCAAATATAAAGATGGAGTTGGATACTGTGACACCCTAGGCTGGACATCGTTGTGTCAATGCAAGTATAGCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

101

Amino Acids

10.76

Weight (kDa)

5.57

Isoelectric Point (pI)

20.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	270
AflIII	ACRYGT	1 cut(s)	107
AluBI	AGCT	1 cut(s)	300
AluI	AGCT	1 cut(s)	300
Alw21I	GWGCWC	1 cut(s)	217
AspA2I	CCTAGG	1 cut(s)	265
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	25
AvrII	CCTAGG	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	2 cut(s)	4, 236
BciVI	GTATCC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	93
BfaI	CTAG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	245
BlnI	CCTAGG	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	192, 205
Bse3DI	GCAATG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	12, 88
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	192, 205
Bsh1285I	CGRYCG	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	3 cut(s)	93, 102, 171
BslI	CCNNNNNNNGG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	39, 112
BspDI	ATCGAT	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	192, 205
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	2 cut(s)	39, 112
BssT1I	CCWWGG	1 cut(s)	265
Bst4CI	ACNGT	3 cut(s)	146, 224, 257
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	2 cut(s)	172, 229
BstF5I	GGATG	2 cut(s)	12, 88
BstKTI	GATC	2 cut(s)	42, 115
BstMBI	GATC	2 cut(s)	39, 112
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 171, 297
BstNSI	RCATGY	3 cut(s)	111, 129, 165
BstSCI	CCNGG	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	245
BsuTUI	ATCGAT	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	12, 88
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	193, 212
Cac8I	GCNNGC	2 cut(s)	172, 229
Cfr10I	RCCGGY	1 cut(s)	170
ClaI	ATCGAT	1 cut(s)	38
CseI	GACGC	1 cut(s)	67
CviAII	CATG	3 cut(s)	108, 126, 162
CviJI	RGCY	4 cut(s)	99, 174, 270, 300
CviKI_1	RGCY	4 cut(s)	99, 174, 270, 300
DpnI	GATC	2 cut(s)	41, 114
DpnII	GATC	2 cut(s)	39, 112
Eco130I	CCWWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	3 cut(s)	111, 129, 165
FaiI	YATR	6 cut(s)	28, 109, 127, 163, 237, 297
FatI	CATG	3 cut(s)	107, 125, 161
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	2 cut(s)	19, 75
FspBI	CTAG	1 cut(s)	266
HapII	CCGG	3 cut(s)	93, 102, 171
HgaI	GACGC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	111, 129, 165
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	3 cut(s)	93, 102, 171
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	2 cut(s)	82, 149
Hpy8I	GTNNAC	2 cut(s)	82, 149
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	3 cut(s)	146, 224, 257
HpyCH4V	TGCA	7 cut(s)	30, 66, 129, 165, 186, 227, 291
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 171, 297
Hsp92II	CATG	3 cut(s)	111, 129, 165
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	39, 112
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	6 cut(s)	106, 115, 184, 205, 218, 256
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	2 cut(s)	41, 114
MboI	GATC	2 cut(s)	39, 112
MfeI	CAATTG	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	229
MroNI	GCCGGC	1 cut(s)	170
MslI	CAYNNNNRTG	2 cut(s)	93, 280
MspI	CCGG	3 cut(s)	93, 102, 171
MspR9I	CCNGG	1 cut(s)	93
MunI	CAATTG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	63, 171, 297
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	39, 112
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	111, 129, 165
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	3 cut(s)	111, 129, 165
PciI	ACATGT	1 cut(s)	107
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	35
Ple19I	CGATCG	1 cut(s)	42
PscI	ACATGT	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	42
RseI	CAYNNNNRTG	2 cut(s)	93, 280
Sau3AI	GATC	2 cut(s)	39, 112
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	66
SmiMI	CAYNNNNRTG	2 cut(s)	93, 280
Sse9I	AATT	1 cut(s)	130
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	146, 224, 257
TaqI	TCGA	3 cut(s)	38, 60, 141
TasI	AATT	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	35
TscAI	CASTG	2 cut(s)	193, 212
TseFI	GTSAC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	257
TspRI	CASTG	2 cut(s)	193, 212
XceI	RCATGY	3 cut(s)	111, 129, 165
XmaJI	CCTAGG	1 cut(s)	265
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.