Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

37811433 .. 37812572

Gene Structure 1140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0319000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTTCTTCTTCTTCTTCTTTAATTTCTTGTTTCATGAGCCTGGAAGACCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCATAGGTTTACCACCATGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCGGGTCAAGAAGTTGGGTCCCCGTTGTTTTCGCAGAATTGGCTGCGATGGGGGCACATGGAGCGAGACTGAAGCTGCTAAACCTGTCTGTGTCAGTGGAATTGAAGAGACTTATGGGAAACTAAGGAAATTTAGATACGAAAACAACAAAGACAAAGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGTGTTCTGATGAGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCCCATTTAGTAATACTAGCACTACACAGCAACTGCCCCCACAATGTGATGATCATGGTTACTGTATGGATGAGAACCTATTTTTCTCTCCAACTGGCTTGGTTGATGATTATGATGACATTTTGAATAGTGATCAGTTTATGGCTTCTCTTGATCAATGGTATGAGGAACAACAACAACAGTTTTCGGATTCTTCACTACTAATGCTGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGATGAGCAGAAACTGCTGCCTTCTCCCTCACTTGGTCACGAGCAGCAGCTCTTTGGTGGTTTTGATATGATAGTTTATGGTTATCATGACCCTGATATTGCACTCGATCTGAATTCAGAAACCCTCAAACTTTCCTATTCTTTCTTTCATCTCGATCTCCATCCAGAAACTCTCAAACTTTTCTATTCTTTCTTTCATCCAGAAACCCTCAAACTTCCATATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

379

Amino Acids

43.72

Weight (kDa)

5.22

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	25 - 151	3.2e-16	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AcsI	RAATTY	4 cut(s)	204, 221, 383, 1024
AcuI	CTGAAG	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	698
AfiI	CCNNNNNNNGG	2 cut(s)	58, 944
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	8 cut(s)	170, 359, 419, 583, 599, 614, 620, 778
AhdI	GACNNNNNGTC	1 cut(s)	491
AjnI	CCWGG	1 cut(s)	42
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
AluBI	AGCT	3 cut(s)	108, 329, 961
AluI	AGCT	3 cut(s)	108, 329, 961
Alw26I	GTCTC	3 cut(s)	314, 356, 536
AlwNI	CAGNNNCTG	2 cut(s)	685, 925
Ama87I	CYCGRG	1 cut(s)	255
ApeKI	GCWGC	7 cut(s)	297, 329, 428, 859, 928, 955, 958
ApoI	RAATTY	4 cut(s)	204, 221, 383, 1024
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	2 cut(s)	256, 257
AsuHPI	GGTGA	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	2 cut(s)	311, 655
BanI	GGYRCC	1 cut(s)	179
BauI	CACGAG	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	7 cut(s)	284, 316, 415, 846, 915, 967, 970
BccI	CCATC	4 cut(s)	296, 433, 461, 1080
BciT130I	CCWGG	1 cut(s)	44
BclI	TGATCA	3 cut(s)	703, 784, 805
BcnI	CCSGG	2 cut(s)	256, 257
BcoDI	GTCTC	3 cut(s)	314, 356, 536
BfaI	CTAG	1 cut(s)	669
BisI	GCNGC	7 cut(s)	298, 330, 429, 860, 929, 956, 959
BlsI	GCNGC	7 cut(s)	299, 331, 430, 861, 930, 957, 960
Bme1390I	CCNGG	3 cut(s)	44, 256, 257
Bme18I	GGWCC	1 cut(s)	272
BmeRI	GACNNNNNGTC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	181, 273, 274
BmrFI	CCNGG	3 cut(s)	44, 256, 257
BpiI	GAAGAC	1 cut(s)	54
BpuMI	CCSGG	2 cut(s)	256, 257
BsaBI	GATNNNNATC	2 cut(s)	558, 1071
BsaJI	CCNNGG	2 cut(s)	197, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 944
Bse1I	ACTGG	1 cut(s)	751
Bse8I	GATNNNNATC	2 cut(s)	558, 1071
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	197, 255
BseGI	GGATG	5 cut(s)	448, 559, 727, 1072, 1108
BseJI	GATNNNNATC	2 cut(s)	558, 1071
BseLI	CCNNNNNNNGG	2 cut(s)	58, 944
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	751
BseRI	GAGGAG	1 cut(s)	522
BseSI	GKGCMC	2 cut(s)	311, 655
BseXI	GCAGC	7 cut(s)	284, 316, 415, 846, 915, 967, 970
BshNI	GGYRCC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	58, 944
BsmAI	GTCTC	3 cut(s)	314, 356, 536
BsmFI	GGGAC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	311, 655
Bsp143I	GATC	5 cut(s)	703, 784, 805, 1018, 1066
Bsp19I	CCATGG	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	154
BspHI	TCATGA	2 cut(s)	36, 997
BspLI	GGNNCC	3 cut(s)	181, 273, 274
BspT107I	GGYRCC	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	751
BssECI	CCNNGG	2 cut(s)	197, 255
BssMI	GATC	5 cut(s)	703, 784, 805, 1018, 1066
BssSI	CACGAG	1 cut(s)	950
BssT1I	CCWWGG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	950
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	716, 834, 887
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	925
BstDEI	CTNAG	2 cut(s)	162, 377
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	5 cut(s)	448, 559, 727, 1072, 1108
BstKTI	GATC	5 cut(s)	706, 787, 808, 1021, 1069
BstMAI	GTCTC	3 cut(s)	314, 356, 536
BstMBI	GATC	5 cut(s)	703, 784, 805, 1018, 1066
BstMWI	GCNNNNNNNGC	4 cut(s)	294, 306, 315, 925
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	42, 254, 255
BstSLI	GKGCMC	2 cut(s)	311, 655
BstV1I	GCAGC	7 cut(s)	284, 316, 415, 846, 915, 967, 970
BstV2I	GAAGAC	1 cut(s)	54
BtgI	CCRYGG	1 cut(s)	197
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	5 cut(s)	448, 559, 727, 1072, 1108
BtsIMutI	CAGTG	2 cut(s)	84, 355
CaiI	CAGNNNCTG	2 cut(s)	685, 925
CciI	TCATGA	2 cut(s)	36, 997
Cfr13I	GGNCC	1 cut(s)	272
Cfr9I	CCCGGG	1 cut(s)	255
CviAII	CATG	7 cut(s)	37, 198, 312, 425, 628, 707, 998
DdeI	CTNAG	2 cut(s)	162, 377
DpnI	GATC	5 cut(s)	705, 786, 807, 1020, 1068
DpnII	GATC	5 cut(s)	703, 784, 805, 1018, 1066
DraIII	CACNNNGTG	1 cut(s)	698
DriI	GACNNNNNGTC	1 cut(s)	491
Eam1104I	CTCTTC	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	7 cut(s)	40, 201, 315, 428, 631, 710, 1001
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	7 cut(s)	36, 197, 311, 424, 627, 706, 997
FbaI	TGATCA	3 cut(s)	703, 784, 805
Fnu4HI	GCNGC	7 cut(s)	298, 330, 429, 860, 929, 956, 959
FokI	GGATG	5 cut(s)	455, 566, 734, 1059, 1095
Fsp4HI	GCNGC	7 cut(s)	298, 330, 429, 860, 929, 956, 959
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	7 cut(s)	298, 330, 429, 860, 929, 956, 959
HapII	CCGG	1 cut(s)	256
Hin1II	CATG	7 cut(s)	40, 201, 315, 428, 631, 710, 1001
HinfI	GANTC	5 cut(s)	89, 123, 486, 559, 842
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	1 cut(s)	442
Hpy166II	GTNNAC	2 cut(s)	191, 450
Hpy188I	TCNGA	5 cut(s)	94, 538, 841, 1023, 1030
Hpy188III	TCNNGA	9 cut(s)	37, 233, 262, 803, 950, 998, 1064, 1076, 1112
Hpy8I	GTNNAC	2 cut(s)	191, 450
HpyAV	CCTTC	2 cut(s)	225, 942
HpyCH4III	ACNGT	3 cut(s)	716, 834, 887
HpyCH4V	TGCA	2 cut(s)	862, 1013
HpyF10VI	GCNNNNNNNGC	4 cut(s)	294, 306, 315, 925
HpyF3I	CTNAG	2 cut(s)	162, 377
Hsp92II	CATG	7 cut(s)	40, 201, 315, 428, 631, 710, 1001
KflI	GGGWCCC	1 cut(s)	272
Ksp22I	TGATCA	3 cut(s)	703, 784, 805
Kzo9I	GATC	5 cut(s)	703, 784, 805, 1018, 1066
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	9 cut(s)	29, 56, 174, 269, 351, 732, 1017, 1089, 1125
Lsp1109I	GCAGC	7 cut(s)	284, 316, 415, 846, 915, 967, 970
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	710, 947
MalI	GATC	5 cut(s)	705, 786, 807, 1020, 1068
MboI	GATC	5 cut(s)	703, 784, 805, 1018, 1066
MboII	GAAGA	9 cut(s)	3, 6, 9, 59, 241, 371, 525, 538, 837
MfeI	CAATTG	1 cut(s)	141
MhlI	GDGCHC	2 cut(s)	311, 655
MluCI	AATT	8 cut(s)	24, 141, 204, 221, 291, 354, 383, 1024
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	9 cut(s)	500, 503, 516, 544, 811, 886, 949, 1046, 1130
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	23, 1138
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	3 cut(s)	44, 256, 257
MunI	CAATTG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	4 cut(s)	294, 306, 315, 925
NciI	CCSGG	2 cut(s)	256, 257
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	703, 784, 805, 1018, 1066
NlaIII	CATG	7 cut(s)	40, 201, 315, 428, 631, 710, 1001
NlaIV	GGNNCC	3 cut(s)	181, 273, 274
NmuCI	GTSAC	1 cut(s)	947
NspI	RCATGY	1 cut(s)	631
PagI	TCATGA	2 cut(s)	36, 997
PciI	ACATGT	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	4 cut(s)	89, 123, 559, 842
PflFI	GACNNNGTC	1 cut(s)	574
PkrI	GCNGC	7 cut(s)	299, 331, 430, 861, 930, 957, 960
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	272
PscI	ACATGT	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	181, 273, 274
PspPI	GGNCC	1 cut(s)	272
PspPPI	RGGWCCY	1 cut(s)	272
PstNI	CAGNNNCTG	2 cut(s)	685, 925
PsyI	GACNNNGTC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	23, 1138
SatI	GCNGC	7 cut(s)	298, 330, 429, 860, 929, 956, 959
Sau3AI	GATC	5 cut(s)	703, 784, 805, 1018, 1066
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	3 cut(s)	44, 256, 257
SduI	GDGCHC	2 cut(s)	311, 655
SetI	ASST	8 cut(s)	54, 110, 190, 331, 340, 732, 880, 963
SinI	GGWCC	1 cut(s)	272
SmaI	CCCGGG	1 cut(s)	257
Sse9I	AATT	8 cut(s)	24, 141, 204, 221, 291, 354, 383, 1024
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	3 cut(s)	42, 254, 255
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	716, 834, 887
TaqI	TCGA	2 cut(s)	1017, 1065
TasI	AATT	8 cut(s)	24, 141, 204, 221, 291, 354, 383, 1024
TfiI	GAWTC	4 cut(s)	89, 123, 559, 842
Tru1I	TTAA	2 cut(s)	23, 1138
Tru9I	TTAA	2 cut(s)	23, 1138
TscAI	CASTG	2 cut(s)	91, 355
TseFI	GTSAC	1 cut(s)	947
TseI	GCWGC	7 cut(s)	297, 329, 428, 859, 928, 955, 958
Tsp45I	GTSAC	1 cut(s)	947
TspDTI	ATGAA	3 cut(s)	25, 1049, 1097
TspMI	CCCGGG	1 cut(s)	255
TspRI	CASTG	2 cut(s)	91, 355
Tth111I	GACNNNGTC	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	4 cut(s)	204, 221, 383, 1024
XceI	RCATGY	1 cut(s)	631
XmaI	CCCGGG	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.