Rorug05G0153100
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000652
Physical Location & Seq
Forward (+)
14212989 .. 14215739
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0153100.1

Sequence Viewer

Length: 885 bp
ATGGAAAAACAGGGAAGGTTGGTGGTTGAAAAAGTGGGAGGAAGGTCAACTGTGACAAGGAGCTTCTCAAAGTACCCTCTCAAATTCTTAGTACCCAGAAAGGTGGGTTCCTCTAAAGCTGATGCTGTTTGGGTTTACACCCTCACCTATGGTGGTGGCATTGTCACCGGAGATTCTATTTCTTGTGAATTTACCATTGGAGATGATTGCACCACTGTCATAACAACCCAAGCGTCCACCAAGGTATACAAGTCGCTGGGGGCTAAGTGCTCTGAACAAGTTATGGAGGCAAGAGTTGGGAGCAATGCTCTTTTGGCTGTCATTCCAGATCCTGTGACATGTTTTTCCACAGCGAGATACTCCCAGAAACAAATCTTTAGGGTAGTCTCTGACTCAAGTTTGGTCCTTGTTGATTGGATTACCAGTGGGCGTCATGAAAGTGGAGAAAAATGGGATTTTGATCTTTATAAGAGTGCAAACCACATCTTTATAGGAGATGAGCCTTTGTTTCTGGACATGGTGCACCTGGAGAGTGGAAGTGCTTCTTCAATTGCAGAACGCATGCAGGACTATCAAGTCATTGCAATGGTTGTACTGTTGGGGCCAAAGATAAAGTACATTCAAGACCTAGTTCAAGAAAATGTGAAAAGGATGATGTCTGAGCAATTGCACATTCCTTCCACTGCCTCAGGTCGCCAAAAGAATTCAAATTCTGATTATCGCTTCACCAAACCAAGCTTTATTGCTTCTTCCAGTGTTTTTGGTCCTAAGGGAATAGGGGTTGTTGTTCGTATAGCTGCCACAACAACTGAATCAGTTTACGAGTTCCTGCAGCATCAATTGGCCGGGATGGAGCCACTACTTGGTGTATCACCATATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

294

Amino Acids

32.33

Weight (kDa)

8.24

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreD PF01774 46 - 271 1.7e-55 UreD urease accessory protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AasI GACNNNNNNGTC 1 cut(s) 575
AccB7I CCANNNNNTGG 1 cut(s) 863
AccI GTMKAC 1 cut(s) 246
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 4 cut(s) 83, 188, 703, 709
AcyI GRCGYC 1 cut(s) 430
AfaI GTAC 4 cut(s) 74, 93, 594, 617
AfiI CCNNNNNNNGG 1 cut(s) 863
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 29, 549, 623, 635, 708
AjnI CCWGG 1 cut(s) 525
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 4 cut(s) 63, 119, 738, 797
AluI AGCT 4 cut(s) 63, 119, 738, 797
Alw21I GWGCWC 2 cut(s) 272, 525
Alw26I GTCTC 1 cut(s) 391
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 332
AoxI GGCC 2 cut(s) 602, 843
ApaLI GTGCAC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 797, 832
ApoI RAATTY 4 cut(s) 83, 188, 703, 709
Asp700I GAANNNNTTC 1 cut(s) 541
AspS9I GGNCC 3 cut(s) 403, 602, 764
AsuC2I CCSGG 1 cut(s) 847
AsuHPI GGTGA 4 cut(s) 136, 157, 718, 864
AvaII GGWCC 2 cut(s) 403, 764
AxyI CCTNAGG 2 cut(s) 688, 768
BaeGI GKGCMC 1 cut(s) 525
Bbv12I GWGCWC 2 cut(s) 272, 525
BbvI GCAGC 2 cut(s) 784, 844
BccI CCATC 1 cut(s) 844
BciT130I CCWGG 1 cut(s) 527
BcnI CCSGG 1 cut(s) 847
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 830
BisI GCNGC 2 cut(s) 798, 833
BlsI GCNGC 2 cut(s) 799, 834
Bme1390I CCNGG 2 cut(s) 527, 847
Bme18I GGWCC 2 cut(s) 403, 764
BmgT120I GGNCC 3 cut(s) 403, 602, 764
BmiI GGNNCC 3 cut(s) 109, 603, 855
BmrFI CCNGG 2 cut(s) 527, 847
BmsI GCATC 2 cut(s) 112, 844
BplI GAGNNNNNCTC 2 cut(s) 292, 324
BpmI CTGGAG 1 cut(s) 548
BpuEI CTTGAG 1 cut(s) 379
BpuMI CCSGG 1 cut(s) 847
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 430
BsaJI CCNNGG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 863
Bse1I ACTGG 2 cut(s) 423, 753
Bse21I CCTNAGG 2 cut(s) 688, 768
Bse3DI GCAATG 3 cut(s) 310, 579, 591
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 657, 855
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 863
BseMI GCAATG 3 cut(s) 310, 579, 591
BseMII CTCAG 2 cut(s) 651, 702
BseNI ACTGG 2 cut(s) 423, 753
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 784, 844
BseYI CCCAGC 1 cut(s) 256
BshFI GGCC 2 cut(s) 604, 845
BsiHKAI GWGCWC 2 cut(s) 272, 525
BsiSI CCGG 2 cut(s) 168, 846
BslI CCNNNNNNNGG 1 cut(s) 863
BsmAI GTCTC 1 cut(s) 391
BsnI GGCC 2 cut(s) 604, 845
Bsp1286I GDGCHC 2 cut(s) 272, 525
Bsp143I GATC 2 cut(s) 328, 460
BspANI GGCC 2 cut(s) 604, 845
BspCNI CTCAG 2 cut(s) 652, 701
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 109, 603, 855
BspMAI CTGCAG 1 cut(s) 834
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 3 cut(s) 310, 579, 591
BsrI ACTGG 2 cut(s) 423, 753
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 328, 460
BssNAI GTATAC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 430
BssT1I CCWWGG 1 cut(s) 240
Bst1107I GTATAC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 527
Bst4CI ACNGT 3 cut(s) 52, 217, 597
BstACI GRCGYC 1 cut(s) 430
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 5 cut(s) 88, 264, 660, 688, 768
BstF5I GGATG 2 cut(s) 657, 855
BstKTI GATC 2 cut(s) 331, 463
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 2 cut(s) 328, 460
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 527
BstNSI RCATGY 2 cut(s) 342, 565
BstSCI CCNGG 2 cut(s) 525, 845
BstSFI CTRYAG 1 cut(s) 830
BstSLI GKGCMC 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 784, 844
BstX2I RGATCY 1 cut(s) 328
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 328
BstZ17I GTATAC 1 cut(s) 247
Bsu36I CCTNAGG 2 cut(s) 688, 768
BsuRI GGCC 2 cut(s) 604, 845
BtsCI GGATG 2 cut(s) 657, 855
BtsI GCAGTG 1 cut(s) 681
BtsIMutI CAGTG 4 cut(s) 213, 430, 681, 760
Cac8I GCNNGC 1 cut(s) 563
CaiI CAGNNNCTG 1 cut(s) 332
CciI TCATGA 1 cut(s) 433
Cfr13I GGNCC 3 cut(s) 403, 602, 764
CseI GACGC 2 cut(s) 222, 419
Csp6I GTAC 4 cut(s) 73, 92, 593, 616
CviAII CATG 4 cut(s) 339, 434, 517, 562
CviQI GTAC 4 cut(s) 73, 92, 593, 616
DdeI CTNAG 5 cut(s) 88, 264, 660, 688, 768
DpnI GATC 2 cut(s) 330, 462
DpnII GATC 2 cut(s) 328, 460
DrdI GACNNNNNNGTC 1 cut(s) 575
DseDI GACNNNNNNGTC 1 cut(s) 575
EaeI YGGCCR 1 cut(s) 843
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 403, 764
Eco81I CCTNAGG 2 cut(s) 688, 768
EcoRI GAATTC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 4 cut(s) 342, 437, 520, 565
FalI AAGNNNNNCTT 2 cut(s) 529, 561
FatI CATG 4 cut(s) 338, 433, 516, 561
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 798, 833
FokI GGATG 2 cut(s) 664, 862
Fsp4HI GCNGC 2 cut(s) 798, 833
FspBI CTAG 1 cut(s) 629
GluI GCNGC 2 cut(s) 798, 833
GsaI CCCAGC 1 cut(s) 260
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 2 cut(s) 604, 845
HapII CCGG 2 cut(s) 168, 846
HgaI GACGC 2 cut(s) 222, 419
Hin1I GRCGYC 1 cut(s) 430
Hin1II CATG 4 cut(s) 342, 437, 520, 565
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HindIII AAGCTT 1 cut(s) 736
HinfI GANTC 3 cut(s) 173, 392, 812
HpaII CCGG 2 cut(s) 168, 846
HphI GGTGA 4 cut(s) 136, 157, 718, 864
Hpy166II GTNNAC 6 cut(s) 48, 136, 237, 247, 523, 820
Hpy188I TCNGA 4 cut(s) 274, 391, 661, 715
Hpy188III TCNNGA 5 cut(s) 326, 434, 512, 623, 635
Hpy8I GTNNAC 6 cut(s) 48, 136, 237, 247, 523, 820
HpyAV CCTTC 3 cut(s) 9, 36, 687
HpyCH4III ACNGT 3 cut(s) 52, 217, 597
HpyCH4V TGCA 8 cut(s) 210, 476, 523, 554, 565, 584, 670, 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 5 cut(s) 88, 264, 660, 688, 768
Hsp92I GRCGYC 1 cut(s) 430
Hsp92II CATG 4 cut(s) 342, 437, 520, 565
Kzo9I GATC 2 cut(s) 328, 460
LmnI GCTCC 3 cut(s) 60, 300, 853
Lsp1109I GCAGC 2 cut(s) 784, 844
LweI GCATC 2 cut(s) 112, 844
MaeI CTAG 1 cut(s) 629
MaeIII GTNAC 3 cut(s) 52, 163, 334
MalI GATC 2 cut(s) 330, 462
MboI GATC 2 cut(s) 328, 460
MboII GAAGA 2 cut(s) 537, 741
MfeI CAATTG 3 cut(s) 549, 665, 839
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 272, 525
MluCI AATT 7 cut(s) 83, 188, 549, 665, 703, 709, 839
MlyI GAGTC 1 cut(s) 386
MnlI CCTC 6 cut(s) 32, 87, 121, 152, 280, 697
MroXI GAANNNNTTC 1 cut(s) 541
MslI CAYNNNNRTG 2 cut(s) 438, 584
MspI CCGG 2 cut(s) 168, 846
MspR9I CCNGG 2 cut(s) 527, 847
MunI CAATTG 3 cut(s) 549, 665, 839
MvaI CCWGG 1 cut(s) 527
MwoI GCNNNNNNNGC 1 cut(s) 314
NciI CCSGG 1 cut(s) 847
NdeII GATC 2 cut(s) 328, 460
NlaIII CATG 4 cut(s) 342, 437, 520, 565
NlaIV GGNNCC 3 cut(s) 109, 603, 855
NmuCI GTSAC 3 cut(s) 52, 163, 334
NspI RCATGY 2 cut(s) 342, 565
PaeI GCATGC 1 cut(s) 565
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 338
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 2 cut(s) 173, 812
PflMI CCANNNNNTGG 1 cut(s) 863
PkrI GCNGC 2 cut(s) 799, 834
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
PscI ACATGT 1 cut(s) 338
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 525
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 525
PspN4I GGNNCC 3 cut(s) 109, 603, 855
PspPI GGNCC 3 cut(s) 403, 602, 764
PstI CTGCAG 1 cut(s) 834
PstNI CAGNNNCTG 1 cut(s) 332
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 4 cut(s) 74, 93, 594, 617
RsaNI GTAC 4 cut(s) 73, 92, 593, 616
RseI CAYNNNNRTG 2 cut(s) 438, 584
SatI GCNGC 2 cut(s) 798, 833
Sau3AI GATC 2 cut(s) 328, 460
Sau96I GGNCC 3 cut(s) 403, 602, 764
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 527, 847
SduI GDGCHC 2 cut(s) 272, 525
SfaNI GCATC 2 cut(s) 112, 844
SfcI CTRYAG 1 cut(s) 830
SinI GGWCC 2 cut(s) 403, 764
SmiMI CAYNNNNRTG 2 cut(s) 438, 584
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SphI GCATGC 1 cut(s) 565
Sse9I AATT 7 cut(s) 83, 188, 549, 665, 703, 709, 839
SspMI CTAG 1 cut(s) 629
StyD4I CCNGG 2 cut(s) 525, 845
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 3 cut(s) 52, 217, 597
TasI AATT 7 cut(s) 83, 188, 549, 665, 703, 709, 839
TatI WGTACW 2 cut(s) 592, 615
TfiI GAWTC 2 cut(s) 173, 812
TscAI CASTG 4 cut(s) 220, 430, 688, 760
TseFI GTSAC 3 cut(s) 52, 163, 334
TseI GCWGC 2 cut(s) 797, 832
Tsp45I GTSAC 3 cut(s) 52, 163, 334
TspDTI ATGAA 1 cut(s) 450
TspRI CASTG 4 cut(s) 220, 430, 688, 760
Van91I CCANNNNNTGG 1 cut(s) 863
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 403, 764
XapI RAATTY 4 cut(s) 83, 188, 703, 709
XceI RCATGY 2 cut(s) 342, 565
XmiI GTMKAC 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.