Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Forward (+)

64659904 .. 64662839

Gene Structure 2936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG467900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATATCAACTGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTACTCTTGCCGACATGCTCTATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATACATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACCTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATTCCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATGATGCCCCTGTACTGATTGTTCTGCTCCAATATGTTCCTAGATTGTATCTCATTTTCCCACTAAGTTCTCAGATCATCAAAGCCACTGGTGTGGTCACAAAGACAGCTTGGGCCGGGGTTGCGTATAATCTCATACTCTACAGTCTACATTGGATAAACAGTACTCATGTGTTTAGTAATTGCAACCCGGAGAACTCCATTGGTTTCAATTATGGCATATTTGAGAATGCACTGACCAACAATGTAGTCTCCTCCTCGTTTCTAGAGAAGTACATGTATTGTCTTTGGTGGGGATTACAGAACTTGAGCTCCTATGGTCAGACTTTGACTACAAGCACATATACCAGTGAAACTTCTTTTGCTATACTCATTGCTATTTTGGGTCTGGTTCTGTTTGCACACTTAATTGGAAATATGCAGGTGAAAACAGAAGAACAAATGGGATATAAGTATGGCGAGGCTTGCTTTCGTTTATGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

255

Amino Acids

28.86

Weight (kDa)

8.9

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	10 - 238	1.2e-11	Ion transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	694
AccI	GTMKAC	1 cut(s)	430
AclWI	GGATC	2 cut(s)	146, 159
AcoI	YGGCCR	1 cut(s)	274
AfaI	GTAC	4 cut(s)	49, 297, 448, 557
AflIII	ACRYGT	2 cut(s)	38, 558
AgsI	TTSAA	2 cut(s)	19, 493
AleI	CACNNNNGTG	1 cut(s)	374
AloI	GAACNNNNNNTCC	2 cut(s)	578, 610
AluBI	AGCT	4 cut(s)	209, 264, 392, 594
AluI	AGCT	4 cut(s)	209, 264, 392, 594
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	1 cut(s)	538
AlwI	GGATC	2 cut(s)	146, 159
AoxI	GGCC	2 cut(s)	274, 396
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	2 cut(s)	400, 473
AsuHPI	GGTGA	3 cut(s)	102, 149, 718
BalI	TGGCCA	1 cut(s)	276
BamHI	GGATCC	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	596
BcnI	CCSGG	2 cut(s)	400, 473
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	5 cut(s)	120, 168, 324, 548, 766
BfmI	CTRYAG	2 cut(s)	252, 424
BfuAI	ACCTGC	1 cut(s)	694
BglII	AGATCT	1 cut(s)	199
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	400, 473
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	400, 473
BmsI	GCATC	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	2 cut(s)	400, 473
BsaJI	CCNNGG	1 cut(s)	399
BsaXI	ACNNNNNCTCC	4 cut(s)	204, 234, 578, 608
Bse1I	ACTGG	3 cut(s)	267, 376, 630
Bse3DI	GCAATG	1 cut(s)	654
BseDI	CCNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	3 cut(s)	170, 239, 368
BseNI	ACTGG	3 cut(s)	267, 376, 630
BseRI	GAGGAG	2 cut(s)	526, 529
BshFI	GGCC	2 cut(s)	276, 398
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	2 cut(s)	399, 473
BsmAI	GTCTC	1 cut(s)	538
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	276, 398
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	4 cut(s)	151, 182, 199, 357
BspANI	GGCC	2 cut(s)	276, 398
BspCNI	CTCAG	3 cut(s)	171, 238, 367
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	256
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	2 cut(s)	146, 159
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	3 cut(s)	267, 376, 630
BssECI	CCNNGG	1 cut(s)	399
BssMI	GATC	4 cut(s)	151, 182, 199, 357
Bst4CI	ACNGT	2 cut(s)	428, 446
BstC8I	GCNNGC	1 cut(s)	748
BstDEI	CTNAG	4 cut(s)	179, 225, 347, 354
BstKTI	GATC	4 cut(s)	154, 185, 202, 360
BstMAI	GTCTC	1 cut(s)	538
BstMBI	GATC	4 cut(s)	151, 182, 199, 357
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 404, 747
BstNSI	RCATGY	3 cut(s)	42, 64, 562
BstSCI	CCNGG	2 cut(s)	398, 471
BstSFI	CTRYAG	2 cut(s)	252, 424
BstX2I	RGATCY	2 cut(s)	151, 199
BstXI	CCANNNNNNTGG	1 cut(s)	376
BstYI	RGATCY	2 cut(s)	151, 199
BsuRI	GGCC	2 cut(s)	276, 398
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	4 cut(s)	212, 369, 515, 637
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	1 cut(s)	748
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	4 cut(s)	48, 296, 447, 556
CviAII	CATG	5 cut(s)	39, 61, 284, 452, 559
CviJI	RGCY	8 cut(s)	209, 264, 276, 368, 392, 398, 594, 746
CviKI_1	RGCY	8 cut(s)	209, 264, 276, 368, 392, 398, 594, 746
CviQI	GTAC	4 cut(s)	48, 296, 447, 556
DdeI	CTNAG	4 cut(s)	179, 225, 347, 354
DpnI	GATC	4 cut(s)	153, 184, 201, 359
DpnII	GATC	4 cut(s)	151, 182, 199, 357
EaeI	YGGCCR	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	596
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	594
EcoICRI	GAGCTC	1 cut(s)	594
EcoRV	GATATC	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	596
FaeI	CATG	5 cut(s)	42, 64, 287, 455, 562
FatI	CATG	5 cut(s)	38, 60, 283, 451, 558
FauNDI	CATATG	1 cut(s)	236
FblI	GTMKAC	1 cut(s)	430
FriOI	GRGCYC	1 cut(s)	596
FspBI	CTAG	5 cut(s)	120, 168, 324, 548, 766
GsuI	CTGGAG	1 cut(s)	250
HaeIII	GGCC	2 cut(s)	276, 398
HapII	CCGG	2 cut(s)	399, 473
Hin1II	CATG	5 cut(s)	42, 64, 287, 455, 562
HpaII	CCGG	2 cut(s)	399, 473
HphI	GGTGA	3 cut(s)	102, 149, 718
Hpy166II	GTNNAC	2 cut(s)	140, 431
Hpy188I	TCNGA	5 cut(s)	180, 187, 228, 357, 606
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	2 cut(s)	140, 431
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	428, 446
HpyCH4V	TGCA	5 cut(s)	254, 468, 515, 683, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 404, 747
HpyF3I	CTNAG	4 cut(s)	179, 225, 347, 354
Hsp92II	CATG	5 cut(s)	42, 64, 287, 455, 562
Kzo9I	GATC	4 cut(s)	151, 182, 199, 357
LmnI	GCTCC	3 cut(s)	269, 315, 599
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	5 cut(s)	120, 168, 324, 548, 766
MaeIII	GTNAC	2 cut(s)	34, 379
MalI	GATC	4 cut(s)	153, 184, 201, 359
MboI	GATC	4 cut(s)	151, 182, 199, 357
MboII	GAAGA	2 cut(s)	184, 728
MflI	RGATCY	2 cut(s)	151, 199
MhlI	GDGCHC	1 cut(s)	596
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	4 cut(s)	27, 463, 493, 690
MluNI	TGGCCA	1 cut(s)	276
MnlI	CCTC	7 cut(s)	87, 126, 228, 234, 547, 550, 736
Mox20I	TGGCCA	1 cut(s)	276
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	2 cut(s)	258, 689
MslI	CAYNNNNRTG	2 cut(s)	282, 374
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	2 cut(s)	399, 473
MspR9I	CCNGG	2 cut(s)	400, 473
Mva1269I	GAATGC	1 cut(s)	517
MwoI	GCNNNNNNNGC	3 cut(s)	70, 404, 747
NciI	CCSGG	2 cut(s)	400, 473
NdeI	CATATG	1 cut(s)	236
NdeII	GATC	4 cut(s)	151, 182, 199, 357
NlaIII	CATG	5 cut(s)	42, 64, 287, 455, 562
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	34, 379
NspI	RCATGY	3 cut(s)	42, 64, 562
OliI	CACNNNNGTG	1 cut(s)	374
PaqCI	CACCTGC	1 cut(s)	694
PciI	ACATGT	2 cut(s)	38, 558
PctI	GAATGC	1 cut(s)	517
PscI	ACATGT	2 cut(s)	38, 558
Psp124BI	GAGCTC	1 cut(s)	596
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	396
PsrI	GAACNNNNNNTAC	2 cut(s)	288, 320
PstI	CTGCAG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	151, 199
RsaI	GTAC	4 cut(s)	49, 297, 448, 557
RsaNI	GTAC	4 cut(s)	48, 296, 447, 556
RseI	CAYNNNNRTG	2 cut(s)	282, 374
SacI	GAGCTC	1 cut(s)	596
SaqAI	TTAA	2 cut(s)	258, 689
Sau3AI	GATC	4 cut(s)	151, 182, 199, 357
Sau96I	GGNCC	1 cut(s)	396
ScaI	AGTACT	1 cut(s)	448
ScrFI	CCNGG	2 cut(s)	400, 473
SduI	GDGCHC	1 cut(s)	596
SetI	ASST	7 cut(s)	145, 176, 211, 266, 394, 596, 708
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	252, 424
SmiMI	CAYNNNNRTG	2 cut(s)	282, 374
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
Sse9I	AATT	4 cut(s)	27, 463, 493, 690
SspMI	CTAG	5 cut(s)	120, 168, 324, 548, 766
SstI	GAGCTC	1 cut(s)	596
StyD4I	CCNGG	2 cut(s)	398, 471
TaaI	ACNGT	2 cut(s)	428, 446
TasI	AATT	4 cut(s)	27, 463, 493, 690
TatI	WGTACW	3 cut(s)	295, 446, 555
Tru1I	TTAA	2 cut(s)	258, 689
Tru9I	TTAA	2 cut(s)	258, 689
TscAI	CASTG	4 cut(s)	219, 376, 522, 637
TseFI	GTSAC	2 cut(s)	34, 379
Tsp45I	GTSAC	2 cut(s)	34, 379
TspDTI	ATGAA	3 cut(s)	65, 73, 232
TspRI	CASTG	4 cut(s)	219, 376, 522, 637
XbaI	TCTAGA	1 cut(s)	547
XceI	RCATGY	3 cut(s)	42, 64, 562
XmiI	GTMKAC	1 cut(s)	430
XspI	CTAG	5 cut(s)	120, 168, 324, 548, 766
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.