E3 ubiquitin-protein ligase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| ABC2_membrane | PF01061 | 194 - 272 | 3.5e-14 | ABC-2 type transporter |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 636 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 152, 170 |
| AatII | GACGTC | 1 cut(s) | 104 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 773 |
| AccBSI | CCGCTC | 1 cut(s) | 123 |
| AccI | GTMKAC | 1 cut(s) | 156 |
| AccII | CGCG | 3 cut(s) | 36, 116, 118 |
| AccIII | TCCGGA | 1 cut(s) | 520 |
| AclWI | GGATC | 3 cut(s) | 145, 694, 758 |
| AcoI | YGGCCR | 1 cut(s) | 421 |
| AcsI | RAATTY | 1 cut(s) | 311 |
| AcuI | CTGAAG | 1 cut(s) | 540 |
| AcyI | GRCGYC | 2 cut(s) | 101, 432 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 294, 773 |
| AflIII | ACRYGT | 1 cut(s) | 579 |
| AgsI | TTSAA | 2 cut(s) | 586, 719 |
| AjiI | CACGTC | 1 cut(s) | 283 |
| AluBI | AGCT | 8 cut(s) | 54, 275, 300, 333, 348, 601, 622, 649 |
| AluI | AGCT | 8 cut(s) | 54, 275, 300, 333, 348, 601, 622, 649 |
| AlwI | GGATC | 3 cut(s) | 145, 694, 758 |
| Ama87I | CYCGRG | 2 cut(s) | 62, 289 |
| Aor13HI | TCCGGA | 1 cut(s) | 520 |
| AoxI | GGCC | 3 cut(s) | 264, 285, 421 |
| ApeKI | GCWGC | 3 cut(s) | 253, 275, 649 |
| ApoI | RAATTY | 1 cut(s) | 311 |
| AspLEI | GCGC | 3 cut(s) | 116, 118, 120 |
| AspS9I | GGNCC | 1 cut(s) | 172 |
| AsuHPI | GGTGA | 3 cut(s) | 232, 700, 733 |
| AvaI | CYCGRG | 2 cut(s) | 62, 289 |
| AvaII | GGWCC | 1 cut(s) | 172 |
| BanII | GRGCYC | 1 cut(s) | 243 |
| BbvI | GCAGC | 3 cut(s) | 240, 262, 636 |
| BccI | CCATC | 2 cut(s) | 140, 574 |
| BceAI | ACGGC | 3 cut(s) | 211, 241, 360 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 585, 619 |
| BfaI | CTAG | 1 cut(s) | 272 |
| BfmI | CTRYAG | 1 cut(s) | 612 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 429 |
| Bme18I | GGWCC | 1 cut(s) | 172 |
| BmeT110I | CYCGRG | 2 cut(s) | 62, 289 |
| BmgBI | CACGTC | 1 cut(s) | 283 |
| BmgT120I | GGNCC | 1 cut(s) | 172 |
| BmiI | GGNNCC | 2 cut(s) | 25, 692 |
| BoxI | GACNNNNGTC | 1 cut(s) | 8 |
| BpmI | CTGGAG | 2 cut(s) | 94, 313 |
| BpuEI | CTTGAG | 2 cut(s) | 290, 680 |
| BsaHI | GRCGYC | 2 cut(s) | 101, 432 |
| BsaJI | CCNNGG | 3 cut(s) | 34, 288, 665 |
| BsaWI | WCCGGW | 2 cut(s) | 453, 520 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 294, 773 |
| Bse118I | RCCGGY | 1 cut(s) | 365 |
| Bse1I | ACTGG | 3 cut(s) | 267, 626, 825 |
| Bse3DI | GCAATG | 1 cut(s) | 836 |
| BseAI | TCCGGA | 1 cut(s) | 520 |
| BseDI | CCNNGG | 3 cut(s) | 34, 288, 665 |
| BseGI | GGATG | 1 cut(s) | 529 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 294, 773 |
| BseMI | GCAATG | 1 cut(s) | 836 |
| BseNI | ACTGG | 3 cut(s) | 267, 626, 825 |
| BsePI | GCGCGC | 2 cut(s) | 114, 116 |
| BseRI | GAGGAG | 3 cut(s) | 16, 683, 791 |
| BseXI | GCAGC | 3 cut(s) | 240, 262, 636 |
| Bsh1236I | CGCG | 3 cut(s) | 36, 116, 118 |
| BshFI | GGCC | 3 cut(s) | 266, 287, 423 |
| BsiHKCI | CYCGRG | 2 cut(s) | 62, 289 |
| BsiSI | CCGG | 7 cut(s) | 58, 351, 366, 420, 454, 521, 683 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 294, 773 |
| BsmI | GAATGC | 1 cut(s) | 22 |
| BsnI | GGCC | 3 cut(s) | 266, 287, 423 |
| BsoBI | CYCGRG | 2 cut(s) | 62, 289 |
| Bsp1286I | GDGCHC | 1 cut(s) | 243 |
| Bsp13I | TCCGGA | 1 cut(s) | 520 |
| Bsp143I | GATC | 4 cut(s) | 137, 205, 699, 763 |
| Bsp19I | CCATGG | 1 cut(s) | 665 |
| BspANI | GGCC | 3 cut(s) | 266, 287, 423 |
| BspEI | TCCGGA | 1 cut(s) | 520 |
| BspFNI | CGCG | 3 cut(s) | 36, 116, 118 |
| BspHI | TCATGA | 1 cut(s) | 810 |
| BspLI | GGNNCC | 2 cut(s) | 25, 692 |
| BspPI | GGATC | 3 cut(s) | 145, 694, 758 |
| BspQI | GCTCTTC | 3 cut(s) | 340, 555, 659 |
| BsrBI | CCGCTC | 1 cut(s) | 123 |
| BsrDI | GCAATG | 1 cut(s) | 836 |
| BsrFI | RCCGGY | 1 cut(s) | 365 |
| BsrI | ACTGG | 3 cut(s) | 267, 626, 825 |
| BssAI | RCCGGY | 1 cut(s) | 365 |
| BssECI | CCNNGG | 3 cut(s) | 34, 288, 665 |
| BssHII | GCGCGC | 2 cut(s) | 114, 116 |
| BssMI | GATC | 4 cut(s) | 137, 205, 699, 763 |
| BssNI | GRCGYC | 2 cut(s) | 101, 432 |
| BssT1I | CCWWGG | 1 cut(s) | 665 |
| Bst6I | CTCTTC | 5 cut(s) | 210, 340, 508, 555, 659 |
| BstACI | GRCGYC | 2 cut(s) | 101, 432 |
| BstC8I | GCNNGC | 6 cut(s) | 22, 34, 116, 118, 239, 302 |
| BstDSI | CCRYGG | 2 cut(s) | 34, 665 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 292 |
| BstF5I | GGATG | 1 cut(s) | 529 |
| BstFNI | CGCG | 3 cut(s) | 36, 116, 118 |
| BstHHI | GCGC | 3 cut(s) | 116, 118, 120 |
| BstKTI | GATC | 4 cut(s) | 140, 208, 702, 766 |
| BstMBI | GATC | 4 cut(s) | 137, 205, 699, 763 |
| BstNSI | RCATGY | 1 cut(s) | 583 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 8 |
| BstSFI | CTRYAG | 1 cut(s) | 612 |
| BstUI | CGCG | 3 cut(s) | 36, 116, 118 |
| BstV1I | GCAGC | 3 cut(s) | 240, 262, 636 |
| BstX2I | RGATCY | 1 cut(s) | 699 |
| BstYI | RGATCY | 1 cut(s) | 699 |
| BsuRI | GGCC | 3 cut(s) | 266, 287, 423 |
| BtgI | CCRYGG | 2 cut(s) | 34, 665 |
| BtrI | CACGTC | 1 cut(s) | 283 |
| BtsCI | GGATG | 1 cut(s) | 529 |
| BtsIMutI | CAGTG | 1 cut(s) | 633 |
| Cac8I | GCNNGC | 6 cut(s) | 22, 34, 116, 118, 239, 302 |
| CciI | TCATGA | 1 cut(s) | 810 |
| CfoI | GCGC | 3 cut(s) | 116, 118, 120 |
| Cfr10I | RCCGGY | 1 cut(s) | 365 |
| Cfr13I | GGNCC | 1 cut(s) | 172 |
| Cfr42I | CCGCGG | 1 cut(s) | 37 |
| CseI | GACGC | 1 cut(s) | 421 |
| CviAII | CATG | 5 cut(s) | 477, 580, 666, 687, 811 |
| DpnI | GATC | 4 cut(s) | 139, 207, 701, 765 |
| DpnII | GATC | 4 cut(s) | 137, 205, 699, 763 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 152, 170 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 152, 170 |
| EaeI | YGGCCR | 1 cut(s) | 421 |
| Eam1104I | CTCTTC | 5 cut(s) | 210, 340, 508, 555, 659 |
| EarI | CTCTTC | 5 cut(s) | 210, 340, 508, 555, 659 |
| EciI | GGCGGA | 1 cut(s) | 19 |
| Eco130I | CCWWGG | 1 cut(s) | 665 |
| Eco24I | GRGCYC | 1 cut(s) | 243 |
| Eco32I | GATATC | 2 cut(s) | 411, 574 |
| Eco47I | GGWCC | 1 cut(s) | 172 |
| Eco57I | CTGAAG | 1 cut(s) | 540 |
| Eco88I | CYCGRG | 2 cut(s) | 62, 289 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 292 |
| EcoRI | GAATTC | 1 cut(s) | 311 |
| EcoRV | GATATC | 2 cut(s) | 411, 574 |
| EcoT14I | CCWWGG | 1 cut(s) | 665 |
| EcoT38I | GRGCYC | 1 cut(s) | 243 |
| ErhI | CCWWGG | 1 cut(s) | 665 |
| FaeI | CATG | 5 cut(s) | 480, 583, 669, 690, 814 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 638, 670 |
| FatI | CATG | 5 cut(s) | 476, 579, 665, 686, 810 |
| FauI | CCCGC | 2 cut(s) | 41, 252 |
| FauNDI | CATATG | 1 cut(s) | 673 |
| FblI | GTMKAC | 1 cut(s) | 156 |
| FokI | GGATG | 1 cut(s) | 536 |
| FriOI | GRGCYC | 1 cut(s) | 243 |
| FspBI | CTAG | 1 cut(s) | 272 |
| GlaI | GCGC | 3 cut(s) | 115, 117, 119 |
| GsuI | CTGGAG | 2 cut(s) | 94, 313 |
| HaeIII | GGCC | 3 cut(s) | 266, 287, 423 |
| HapII | CCGG | 7 cut(s) | 58, 351, 366, 420, 454, 521, 683 |
| HgaI | GACGC | 1 cut(s) | 421 |
| HhaI | GCGC | 3 cut(s) | 116, 118, 120 |
| Hin1I | GRCGYC | 2 cut(s) | 101, 432 |
| Hin1II | CATG | 5 cut(s) | 480, 583, 669, 690, 814 |
| Hin6I | GCGC | 3 cut(s) | 114, 116, 118 |
| HinP1I | GCGC | 3 cut(s) | 114, 116, 118 |
| HincII | GTYRAC | 1 cut(s) | 157 |
| HindII | GTYRAC | 1 cut(s) | 157 |
| HindIII | AAGCTT | 1 cut(s) | 620 |
| HinfI | GANTC | 7 cut(s) | 4, 164, 324, 357, 416, 814, 833 |
| HpaII | CCGG | 7 cut(s) | 58, 351, 366, 420, 454, 521, 683 |
| HphI | GGTGA | 3 cut(s) | 232, 700, 733 |
| Hpy166II | GTNNAC | 1 cut(s) | 157 |
| Hpy188III | TCNNGA | 6 cut(s) | 13, 64, 291, 521, 697, 811 |
| Hpy8I | GTNNAC | 1 cut(s) | 157 |
| Hpy99I | CGWCG | 8 cut(s) | 14, 103, 158, 161, 164, 262, 381, 437 |
| HpyAV | CCTTC | 2 cut(s) | 288, 806 |
| HpyCH4IV | ACGT | 3 cut(s) | 75, 101, 282 |
| HpyCH4V | TGCA | 2 cut(s) | 20, 677 |
| HpySE526I | ACGT | 3 cut(s) | 75, 101, 282 |
| Hsp92I | GRCGYC | 2 cut(s) | 101, 432 |
| Hsp92II | CATG | 5 cut(s) | 480, 583, 669, 690, 814 |
| HspAI | GCGC | 3 cut(s) | 114, 116, 118 |
| Kpn2I | TCCGGA | 1 cut(s) | 520 |
| KspI | CCGCGG | 1 cut(s) | 37 |
| Kzo9I | GATC | 4 cut(s) | 137, 205, 699, 763 |
| LguI | GCTCTTC | 3 cut(s) | 340, 555, 659 |
| LmnI | GCTCC | 5 cut(s) | 29, 128, 297, 353, 696 |
| Lsp1109I | GCAGC | 3 cut(s) | 240, 262, 636 |
| MaeI | CTAG | 1 cut(s) | 272 |
| MaeII | ACGT | 3 cut(s) | 75, 101, 282 |
| MalI | GATC | 4 cut(s) | 139, 207, 701, 765 |
| MbiI | CCGCTC | 1 cut(s) | 123 |
| MboI | GATC | 4 cut(s) | 137, 205, 699, 763 |
| MboII | GAAGA | 7 cut(s) | 227, 327, 525, 546, 572, 646, 789 |
| MfeI | CAATTG | 1 cut(s) | 176 |
| MflI | RGATCY | 1 cut(s) | 699 |
| MhlI | GDGCHC | 1 cut(s) | 243 |
| MluCI | AATT | 2 cut(s) | 176, 311 |
| MlyI | GAGTC | 3 cut(s) | 158, 318, 425 |
| MmeI | TCCRAC | 4 cut(s) | 129, 240, 359, 754 |
| MnlI | CCTC | 9 cut(s) | 37, 161, 163, 211, 256, 298, 704, 714, 812 |
| MroI | TCCGGA | 1 cut(s) | 520 |
| MspA1I | CMGCKG | 2 cut(s) | 36, 253 |
| MspI | CCGG | 7 cut(s) | 58, 351, 366, 420, 454, 521, 683 |
| MunI | CAATTG | 1 cut(s) | 176 |
| Mva1269I | GAATGC | 1 cut(s) | 22 |
| MvnI | CGCG | 3 cut(s) | 36, 116, 118 |
| NcoI | CCATGG | 1 cut(s) | 665 |
| NdeI | CATATG | 1 cut(s) | 673 |
| NdeII | GATC | 4 cut(s) | 137, 205, 699, 763 |
| NlaIII | CATG | 5 cut(s) | 480, 583, 669, 690, 814 |
| NlaIV | GGNNCC | 2 cut(s) | 25, 692 |
| NmeAIII | GCCGAG | 1 cut(s) | 213 |
| NspI | RCATGY | 1 cut(s) | 583 |
| PaeR7I | CTCGAG | 1 cut(s) | 62 |
| PagI | TCATGA | 1 cut(s) | 810 |
| PauI | GCGCGC | 2 cut(s) | 114, 116 |
| PciI | ACATGT | 1 cut(s) | 579 |
| PciSI | GCTCTTC | 3 cut(s) | 340, 555, 659 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 141, 150, 159, 234, 441 |
| PctI | GAATGC | 1 cut(s) | 22 |
| PfeI | GAWTC | 3 cut(s) | 357, 814, 833 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 773 |
| PleI | GAGTC | 3 cut(s) | 158, 318, 424 |
| PpsI | GAGTC | 3 cut(s) | 158, 318, 424 |
| PscI | ACATGT | 1 cut(s) | 579 |
| PshAI | GACNNNNGTC | 1 cut(s) | 8 |
| PsiI | TTATAA | 1 cut(s) | 636 |
| PspN4I | GGNNCC | 2 cut(s) | 25, 692 |
| PspPI | GGNCC | 1 cut(s) | 172 |
| PsuI | RGATCY | 1 cut(s) | 699 |
| PteI | GCGCGC | 2 cut(s) | 114, 116 |
| SacII | CCGCGG | 1 cut(s) | 37 |
| SalI | GTCGAC | 1 cut(s) | 155 |
| SapI | GCTCTTC | 3 cut(s) | 340, 555, 659 |
| Sau3AI | GATC | 4 cut(s) | 137, 205, 699, 763 |
| Sau96I | GGNCC | 1 cut(s) | 172 |
| SchI | GAGTC | 3 cut(s) | 158, 318, 425 |
| SduI | GDGCHC | 1 cut(s) | 243 |
| SfcI | CTRYAG | 1 cut(s) | 612 |
| Sfr274I | CTCGAG | 1 cut(s) | 62 |
| Sfr303I | CCGCGG | 1 cut(s) | 37 |
| SgrBI | CCGCGG | 1 cut(s) | 37 |
| SgrDI | CGTCGACG | 1 cut(s) | 155 |
| SinI | GGWCC | 1 cut(s) | 172 |
| SlaI | CTCGAG | 1 cut(s) | 62 |
| SmlI | CTYRAG | 3 cut(s) | 62, 305, 695 |
| SmoI | CTYRAG | 3 cut(s) | 62, 305, 695 |
| Sse9I | AATT | 2 cut(s) | 176, 311 |
| SspMI | CTAG | 1 cut(s) | 272 |
| StyI | CCWWGG | 1 cut(s) | 665 |
| TaiI | ACGT | 3 cut(s) | 78, 104, 285 |
| TaqI | TCGA | 6 cut(s) | 12, 63, 144, 156, 435, 605 |
| TasI | AATT | 2 cut(s) | 176, 311 |
| TfiI | GAWTC | 3 cut(s) | 357, 814, 833 |
| TscAI | CASTG | 1 cut(s) | 633 |
| TseI | GCWGC | 3 cut(s) | 253, 275, 649 |
| TspDTI | ATGAA | 4 cut(s) | 465, 540, 825, 827 |
| TspRI | CASTG | 1 cut(s) | 633 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 773 |
| VpaK11BI | GGWCC | 1 cut(s) | 172 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 292 |
| XapI | RAATTY | 1 cut(s) | 311 |
| XceI | RCATGY | 1 cut(s) | 583 |
| XhoI | CTCGAG | 1 cut(s) | 62 |
| XmiI | GTMKAC | 1 cut(s) | 156 |
| XspI | CTAG | 1 cut(s) | 272 |
| ZraI | GACGTC | 1 cut(s) | 102 |