Rh7AG084500
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000652
Physical Location & Seq
Reverse (-)
6269670 .. 6271003
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG084500.1

Sequence Viewer

Length: 420 bp
ATGTACATAAATATGATATTTATTGGTTCAGATCCGCCTTCTTTTGGCTATCAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGAACATAAACACAAGGGATGTGAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGGATTTCTTCAGAAGAGCCATCGGATATCTACATGTTCAATCGAATGGCAGAACTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

139

Amino Acids

16.22

Weight (kDa)

7.85

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 73 - 138 6.4e-12 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 1 cut(s) 35
AclWI GGATC 3 cut(s) 26, 331, 395
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 44, 410
AflIII ACRYGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 223, 356
AluBI AGCT 2 cut(s) 259, 286
AluI AGCT 2 cut(s) 259, 286
Alw21I GWGCWC 1 cut(s) 94
AlwI GGATC 3 cut(s) 26, 331, 395
Aor13HI TCCGGA 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 337, 370
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 273
BccI CCATC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 222, 256
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 410
Bse1I ACTGG 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 2 cut(s) 118, 166
BseLI CCNNNNNNNGG 2 cut(s) 44, 410
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 2 cut(s) 158, 320
BslI CCNNNNNNNGG 2 cut(s) 44, 410
Bsp1286I GDGCHC 1 cut(s) 94
Bsp13I TCCGGA 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 31, 336, 400
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 106
BspEI TCCGGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 3 cut(s) 26, 331, 395
BspQI GCTCTTC 2 cut(s) 192, 296
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 31, 336, 400
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 87
Bst6I CTCTTC 3 cut(s) 145, 192, 296
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 2 cut(s) 118, 166
BstKTI GATC 3 cut(s) 34, 339, 403
BstMBI GATC 3 cut(s) 31, 336, 400
BstMWI GCNNNNNNNGC 2 cut(s) 283, 320
BstNSI RCATGY 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 31, 336
BstYI RGATCY 2 cut(s) 31, 336
BtgI CCRYGG 1 cut(s) 302
BtsCI GGATG 2 cut(s) 118, 166
BtsIMutI CAGTG 1 cut(s) 270
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 217, 303, 324
CviJI RGCY 8 cut(s) 48, 121, 202, 254, 259, 286, 328, 396
CviKI_1 RGCY 8 cut(s) 48, 121, 202, 254, 259, 286, 328, 396
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 93
DpnI GATC 3 cut(s) 33, 338, 402
DpnII GATC 3 cut(s) 31, 336, 400
Eam1104I CTCTTC 3 cut(s) 145, 192, 296
EarI CTCTTC 3 cut(s) 145, 192, 296
EciI GGCGGA 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 302
Eco32I GATATC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 3 cut(s) 220, 306, 327
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 3 cut(s) 216, 302, 323
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 2 cut(s) 125, 173
Fsp4HI GCNGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 287
HapII CCGG 2 cut(s) 158, 320
Hin1II CATG 3 cut(s) 220, 306, 327
HindIII AAGCTT 1 cut(s) 257
HpaII CCGG 2 cut(s) 158, 320
HphI GGTGA 2 cut(s) 337, 370
Hpy188I TCNGA 5 cut(s) 31, 79, 96, 196, 208
Hpy188III TCNNGA 2 cut(s) 158, 334
HpyAV CCTTC 2 cut(s) 48, 408
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 283, 320
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 3 cut(s) 220, 306, 327
Kpn2I TCCGGA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 31, 336, 400
LguI GCTCTTC 2 cut(s) 192, 296
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 5 cut(s) 132, 171, 276, 333, 361
Lsp1109I GCAGC 1 cut(s) 273
MalI GATC 3 cut(s) 33, 338, 402
MboI GATC 3 cut(s) 31, 336, 400
MboII GAAGA 4 cut(s) 162, 183, 209, 283
MflI RGATCY 2 cut(s) 31, 336
MhlI GDGCHC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 4 cut(s) 62, 111, 341, 351
MroI TCCGGA 1 cut(s) 157
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 2 cut(s) 158, 320
MwoI GCNNNNNNNGC 2 cut(s) 283, 320
NcoI CCATGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 310
NdeII GATC 3 cut(s) 31, 336, 400
NlaIII CATG 3 cut(s) 220, 306, 327
NlaIV GGNNCC 1 cut(s) 329
NspI RCATGY 1 cut(s) 220
PciI ACATGT 1 cut(s) 216
PciSI GCTCTTC 2 cut(s) 192, 296
PflMI CCANNNNNTGG 1 cut(s) 410
PkrI GCNGC 1 cut(s) 288
PscI ACATGT 1 cut(s) 216
PsiI TTATAA 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 329
PsuI RGATCY 2 cut(s) 31, 336
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 11
SapI GCTCTTC 2 cut(s) 192, 296
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 3 cut(s) 31, 336, 400
SduI GDGCHC 1 cut(s) 94
SetI ASST 6 cut(s) 171, 261, 288, 350, 383, 419
SfcI CTRYAG 1 cut(s) 249
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SsiI CCGC 1 cut(s) 35
StyI CCWWGG 1 cut(s) 302
TaqI TCGA 2 cut(s) 226, 242
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 270
TseI GCWGC 1 cut(s) 286
TspDTI ATGAA 1 cut(s) 177
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 410
XceI RCATGY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.