Rmu_co8056148.1_g000001

Pleiotropic drug resistance protein 2-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8056148.1
Physical Location & Seq
Reverse (-)
2 .. 466
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8056148.1_g000001.1.cds

Sequence Viewer

Length: 394 bp
atggctgtaattgcattgactgtgttcttaagaacggaaatgaaagctggtcaaatacaagatgcagcaaaattttggggtgcattgtttttcagtctcatcaatgtcatgtttaatggaatggcagagcttgccatgacagttttcaggcttcctgtgttctataaacagagagatgccttgttctatcccgggtgggctttcgggttgcccctttggatcctcagaattcccatttcagtaatggagtcaggcatttggatcattcttacttattactccattggttttgcacctgctgcaagtaggtttttcaaacaattcttggctttctttggagtgcatcagatggctctctccctcttccgtttcattgcagctgttggaagaacag

Protein Analysis

131

Amino Acids

14.92

Weight (kDa)

10.2

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000652)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 304
Acc36I ACCTGC 1 cut(s) 304
AclWI GGATC 3 cut(s) 214, 227, 269
AcsI RAATTY 2 cut(s) 71, 228
AflII CTTAAG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 316
AluBI AGCT 3 cut(s) 47, 130, 380
AluI AGCT 3 cut(s) 47, 130, 380
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 3 cut(s) 214, 227, 269
Ama87I CYCGRG 1 cut(s) 191
ApeKI GCWGC 3 cut(s) 65, 299, 377
ApoI RAATTY 2 cut(s) 71, 228
AsuC2I CCSGG 2 cut(s) 192, 193
AvaI CYCGRG 1 cut(s) 191
BamHI GGATCC 1 cut(s) 219
BbvI GCAGC 3 cut(s) 77, 286, 389
BccI CCATC 1 cut(s) 343
BcnI CCSGG 2 cut(s) 192, 193
BcoDI GTCTC 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 28
BfuAI ACCTGC 1 cut(s) 304
BisI GCNGC 3 cut(s) 66, 300, 378
BlsI GCNGC 3 cut(s) 67, 301, 379
Bme1390I CCNGG 2 cut(s) 192, 193
BmeT110I CYCGRG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 2 cut(s) 192, 193
BmsI GCATC 3 cut(s) 52, 166, 352
BpuMI CCSGG 2 cut(s) 192, 193
BsaJI CCNNGG 1 cut(s) 191
Bse3DI GCAATG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 77, 286, 389
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 101
BsoBI CYCGRG 1 cut(s) 191
Bsp143I GATC 2 cut(s) 219, 261
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 221
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 3 cut(s) 214, 227, 269
BspTI CTTAAG 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 2 cut(s) 219, 261
Bst4CI ACNGT 2 cut(s) 22, 142
Bst6I CTCTTC 1 cut(s) 368
BstAFI CTTAAG 1 cut(s) 28
BstAPI GCANNNNNTGC 2 cut(s) 131, 299
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 224
BstKTI GATC 2 cut(s) 222, 264
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 219, 261
BstMWI GCNNNNNNNGC 3 cut(s) 11, 131, 299
BstSCI CCNGG 2 cut(s) 190, 191
BstV1I GCAGC 3 cut(s) 77, 286, 389
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 191
CviAII CATG 2 cut(s) 109, 136
CviJI RGCY 8 cut(s) 5, 47, 130, 151, 200, 329, 353, 380
CviKI_1 RGCY 8 cut(s) 5, 47, 130, 151, 200, 329, 353, 380
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 221, 263
DpnII GATC 2 cut(s) 219, 261
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 228
FaeI CATG 2 cut(s) 112, 139
FaiI YATR 3 cut(s) 110, 137, 165
FatI CATG 2 cut(s) 108, 135
Fnu4HI GCNGC 3 cut(s) 66, 300, 378
Fsp4HI GCNGC 3 cut(s) 66, 300, 378
GluI GCNGC 3 cut(s) 66, 300, 378
HapII CCGG 1 cut(s) 192
Hin1II CATG 2 cut(s) 112, 139
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 192
Hpy188I TCNGA 2 cut(s) 227, 348
HpyCH4III ACNGT 2 cut(s) 22, 142
HpyCH4V TGCA 7 cut(s) 14, 65, 83, 293, 302, 343, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 131, 299
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 2 cut(s) 112, 139
Kzo9I GATC 2 cut(s) 219, 261
LpnPI CCDG 6 cut(s) 33, 133, 168, 205, 237, 309
Lsp1109I GCAGC 3 cut(s) 77, 286, 389
LweI GCATC 3 cut(s) 52, 166, 352
MalI GATC 2 cut(s) 221, 263
MboI GATC 2 cut(s) 219, 261
MboII GAAGA 1 cut(s) 355
MflI RGATCY 1 cut(s) 219
MluCI AATT 4 cut(s) 9, 71, 228, 320
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 2 cut(s) 233, 371
MseI TTAA 2 cut(s) 29, 114
MspA1I CMGCKG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 28
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 192, 193
MwoI GCNNNNNNNGC 3 cut(s) 11, 131, 299
NciI CCSGG 2 cut(s) 192, 193
NdeII GATC 2 cut(s) 219, 261
NlaIII CATG 2 cut(s) 112, 139
NlaIV GGNNCC 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 304
PkrI GCNGC 3 cut(s) 67, 301, 379
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 219
PvuII CAGCTG 1 cut(s) 380
SaqAI TTAA 2 cut(s) 29, 114
SatI GCNGC 3 cut(s) 66, 300, 378
Sau3AI GATC 2 cut(s) 219, 261
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 2 cut(s) 192, 193
SetI ASST 5 cut(s) 49, 132, 298, 311, 382
SfaNI GCATC 3 cut(s) 52, 166, 352
SmaI CCCGGG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 4 cut(s) 9, 71, 228, 320
StyD4I CCNGG 2 cut(s) 190, 191
TaaI ACNGT 2 cut(s) 22, 142
TasI AATT 4 cut(s) 9, 71, 228, 320
Tru1I TTAA 2 cut(s) 29, 114
Tru9I TTAA 2 cut(s) 29, 114
TseI GCWGC 3 cut(s) 65, 299, 377
TspDTI ATGAA 2 cut(s) 56, 361
TspGWI ACGGA 2 cut(s) 50, 356
TspMI CCCGGG 1 cut(s) 191
Vha464I CTTAAG 1 cut(s) 28
XapI RAATTY 2 cut(s) 71, 228
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmaI CCCGGG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.