Rh1CG036100
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000652
Physical Location & Seq
Forward (+)
7060202 .. 7060945
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG036100.1

Sequence Viewer

Length: 744 bp
ATGACACTATTCCTAAGGACTAAGATGCACCATGACACAGTGATTAATGGAGAACTTTATGTTGGTGCTTTGTTCTTCTCCTTGTATACTGTTGTGCTCAATGCAGTGGTAGAGATATCGATGACTATAGCGAAGCTTCCAGTTTTTTATAAGCAAAGAAACTTTTTTCCACCATGGGCATATGCACTTCCCACGCGGATCCTCAAGATCCCTCTCACCTATGTTGAAGTTGGTGTTTGGGTATTTATTTCCTATTATGTCATTGGATATGATCCAAATGTTGGAAGGTTGATCAAGCAATACCTTCTCCTCCTACTCATGCATCAAATGGCTAATGCATTATTCAAATTCATTGCTGGAACTGGTAGAAGCTTGACTATTGCTAATACACTTGCCTCATTCGCAACATGCATATATGTGGCTTTGGGAGGCTTTATCCTGTCAAGAGGTAATATAAAGAAATGGTGGAAATGGGGCTACTGGATATCACCTTTGATGTATGGGCAGAATGCTATTAATGTAGTTAATGAGTTCTTTGGCAAGAGTTGGAGACATGAAATTCCAAACTCAATAGAATCATTAGGAATTGCTATTCTGAAGTCTCGTGGATTCCGTACAAATGCGTATTGGTATTGGATTGGCGCTGGAGCATTGGCTGGATACATGCTCTTTTTCAACATTTGTTACACTCTGGCTCTTACTTATCTAAACCCTTTGGACAAGCCAAGAATCTCAAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

247

Amino Acids

28.39

Weight (kDa)

9.8

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 2 - 172 3.2e-33 ABC-2 type transporter
PDR_assoc PF08370 183 - 243 9.4e-28 Plant PDR ABC transporter associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 281
AccI GTMKAC 1 cut(s) 86
AccII CGCG 1 cut(s) 196
AciI CCGC 1 cut(s) 196
AclWI GGATC 4 cut(s) 193, 202, 206, 266
AcsI RAATTY 2 cut(s) 347, 558
AcuI CTGAAG 1 cut(s) 617
AfaI GTAC 1 cut(s) 616
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 3 cut(s) 227, 346, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
AluBI AGCT 2 cut(s) 136, 372
AluI AGCT 2 cut(s) 136, 372
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 2 cut(s) 544, 606
AlwI GGATC 4 cut(s) 193, 202, 206, 266
ApoI RAATTY 2 cut(s) 347, 558
AseI ATTAAT 2 cut(s) 45, 516
AspLEI GCGC 1 cut(s) 644
AsuHPI GGTGA 2 cut(s) 208, 480
AxyI CCTNAGG 1 cut(s) 14
BamHI GGATCC 1 cut(s) 198
BauI CACGAG 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 653
BclI TGATCA 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 544, 606
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 645
BfuI GTATCC 1 cut(s) 653
BmiI GGNNCC 1 cut(s) 200
BmsI GCATC 2 cut(s) 15, 331
BpmI CTGGAG 1 cut(s) 666
BpuEI CTTGAG 2 cut(s) 188, 718
Bsa29I ATCGAT 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 3 cut(s) 140, 367, 485
Bse21I CCTNAGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMI GCAATG 1 cut(s) 351
BseNI ACTGG 3 cut(s) 140, 367, 485
BseRI GAGGAG 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 196
BshVI ATCGAT 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 544, 606
BsmI GAATGC 1 cut(s) 514
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 198, 207, 271, 291
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 1 cut(s) 196
BspDI ATCGAT 1 cut(s) 119
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 4 cut(s) 193, 202, 206, 266
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 3 cut(s) 140, 367, 485
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 4 cut(s) 198, 207, 271, 291
BssNAI GTATAC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 603
BssT1I CCWWGG 1 cut(s) 173
Bst1107I GTATAC 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 603
Bst4CI ACNGT 2 cut(s) 40, 91
BstDEI CTNAG 2 cut(s) 14, 21
BstDSI CCRYGG 1 cut(s) 173
BstFNI CGCG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 4 cut(s) 201, 210, 274, 294
BstMAI GTCTC 2 cut(s) 544, 606
BstMBI GATC 4 cut(s) 198, 207, 271, 291
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstNSI RCATGY 2 cut(s) 411, 667
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 198, 207
BstYI RGATCY 2 cut(s) 198, 207
BstZ17I GTATAC 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 119
Bsu36I CCTNAGG 1 cut(s) 14
BsuI GTATCC 1 cut(s) 653
BsuTUI ATCGAT 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 173
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 45, 111
CfoI GCGC 1 cut(s) 644
ClaI ATCGAT 1 cut(s) 119
Csp6I GTAC 1 cut(s) 615
CviAII CATG 6 cut(s) 32, 174, 319, 408, 554, 664
CviJI RGCY 9 cut(s) 136, 332, 372, 422, 432, 477, 656, 695, 724
CviKI_1 RGCY 9 cut(s) 136, 332, 372, 422, 432, 477, 656, 695, 724
CviQI GTAC 1 cut(s) 615
DdeI CTNAG 2 cut(s) 14, 21
DpnI GATC 4 cut(s) 200, 209, 273, 293
DpnII GATC 4 cut(s) 198, 207, 271, 291
Eco130I CCWWGG 1 cut(s) 173
Eco32I GATATC 2 cut(s) 117, 486
Eco57I CTGAAG 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 14
EcoRV GATATC 2 cut(s) 117, 486
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 3 cut(s) 324, 340, 413
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 6 cut(s) 35, 177, 322, 411, 557, 667
FatI CATG 6 cut(s) 31, 173, 318, 407, 553, 663
FauNDI CATATG 1 cut(s) 181
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 86
GlaI GCGC 1 cut(s) 643
GsuI CTGGAG 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 645
HhaI GCGC 1 cut(s) 644
Hin1II CATG 6 cut(s) 35, 177, 322, 411, 557, 667
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HindIII AAGCTT 2 cut(s) 134, 370
HinfI GANTC 3 cut(s) 575, 609, 729
HphI GGTGA 2 cut(s) 208, 480
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 2 cut(s) 205, 444
Hpy8I GTNNAC 1 cut(s) 87
HpyAV CCTTC 2 cut(s) 279, 314
HpyCH4III ACNGT 2 cut(s) 40, 91
HpyCH4V TGCA 6 cut(s) 28, 104, 185, 322, 338, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 2 cut(s) 14, 21
Hsp92II CATG 6 cut(s) 35, 177, 322, 411, 557, 667
HspAI GCGC 1 cut(s) 642
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 4 cut(s) 198, 207, 271, 291
LmnI GCTCC 1 cut(s) 647
LpnPI CCDG 8 cut(s) 153, 342, 348, 452, 466, 630, 642, 677
LweI GCATC 2 cut(s) 15, 331
MaeIII GTNAC 1 cut(s) 683
MalI GATC 4 cut(s) 200, 209, 273, 293
MboI GATC 4 cut(s) 198, 207, 271, 291
MboII GAAGA 1 cut(s) 67
MflI RGATCY 2 cut(s) 198, 207
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 347, 558, 585
MmeI TCCRAC 2 cut(s) 262, 527
MnlI CCTC 6 cut(s) 212, 222, 320, 406, 422, 440
Mph1103I ATGCAT 3 cut(s) 324, 340, 413
MseI TTAA 3 cut(s) 45, 516, 525
MslI CAYNNNNRTG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 514
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 401
NcoI CCATGG 1 cut(s) 173
NdeI CATATG 1 cut(s) 181
NdeII GATC 4 cut(s) 198, 207, 271, 291
NlaIII CATG 6 cut(s) 35, 177, 322, 411, 557, 667
NlaIV GGNNCC 1 cut(s) 200
NsiI ATGCAT 3 cut(s) 324, 340, 413
NspI RCATGY 2 cut(s) 411, 667
PcsI WCGNNNNNNNCGW 1 cut(s) 610
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 3 cut(s) 575, 609, 729
PflMI CCANNNNNTGG 1 cut(s) 281
PshBI ATTAAT 2 cut(s) 45, 516
PsiI TTATAA 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 198, 207
RsaI GTAC 1 cut(s) 616
RsaNI GTAC 1 cut(s) 615
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 3 cut(s) 45, 516, 525
Sau3AI GATC 4 cut(s) 198, 207, 271, 291
SduI GDGCHC 1 cut(s) 99
SetI ASST 7 cut(s) 138, 221, 290, 306, 374, 451, 493
SfaNI GCATC 2 cut(s) 15, 331
SfcI CTRYAG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 203, 733
SmoI CTYRAG 2 cut(s) 203, 733
Sse9I AATT 3 cut(s) 347, 558, 585
SsiI CCGC 1 cut(s) 196
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 40, 91
TaqI TCGA 1 cut(s) 119
TasI AATT 3 cut(s) 347, 558, 585
TfiI GAWTC 3 cut(s) 575, 609, 729
Tru1I TTAA 3 cut(s) 45, 516, 525
Tru9I TTAA 3 cut(s) 45, 516, 525
TscAI CASTG 2 cut(s) 45, 111
TspDTI ATGAA 2 cut(s) 340, 570
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 2 cut(s) 45, 111
Van91I CCANNNNNTGG 1 cut(s) 281
VspI ATTAAT 2 cut(s) 45, 516
XapI RAATTY 2 cut(s) 347, 558
XceI RCATGY 2 cut(s) 411, 667
XmiI GTMKAC 1 cut(s) 86
Zsp2I ATGCAT 3 cut(s) 324, 340, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.