Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

55146625 .. 55149403

Gene Structure 2779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG362800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACACTGCCTTTGTGTCTTACTAAATGGTCTAATTCTGTTTCTTTGCTAAAACAAATTAATGACTTCCTTTTCATATGTGTAAAAGATAGAGGGAAGGGAAATAAATATGAAACTAGATGCCCTTATATTTATATTACAATTTCCAGTTTATTTTCGAAAATCATGATATCAACTGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTGCTCTTGCCAACATGCTCTATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATATATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACTTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATACCTGCAGTTAAAAGCTCCAGTTCTGGCCATACCCATAATGCCCCTCTTGGGCCGGGGCTGCGTATAATCTCATACTCTACAGTCTACATGTTAGCTAGTCATGTGCTTCATGGTACCTATTATCAATCAAACGATCCGCCTTTTTTTGGCTATCAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACAAAAAGGATGTGAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAAACCTAATTGATATTGATGATTGGATTTCTTCAGAAGAGCCATCAGACATCTACATTTTCGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

248

Amino Acids

28.44

Weight (kDa)

9.53

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	498
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	3 cut(s)	311, 324, 542
AcoI	YGGCCR	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	2 cut(s)	529, 614
AfiI	CCNNNNNNNGG	2 cut(s)	462, 560
AflIII	ACRYGT	2 cut(s)	203, 501
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	3 cut(s)	374, 429, 509
AluI	AGCT	3 cut(s)	374, 429, 509
Alw21I	GWGCWC	2 cut(s)	217, 610
AlwI	GGATC	3 cut(s)	311, 324, 542
Aor13HI	TCCGGA	1 cut(s)	673
AoxI	GGCC	2 cut(s)	439, 464
ApeKI	GCWGC	1 cut(s)	472
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	60
Asp718I	GGTACC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	267, 314
AsuII	TTCGAA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	527
BauI	CACGAG	1 cut(s)	603
Bbv12I	GWGCWC	2 cut(s)	217, 610
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	468
BfaI	CTAG	4 cut(s)	117, 285, 333, 510
BfmI	CTRYAG	2 cut(s)	417, 492
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
Bme1390I	CCNGG	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	2 cut(s)	318, 529
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	415
Bpu14I	TTCGAA	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	468
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 560
Bse1I	ACTGG	2 cut(s)	147, 432
BseAI	TCCGGA	1 cut(s)	673
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	2 cut(s)	634, 682
BseLI	CCNNNNNNNGG	2 cut(s)	462, 560
BseMII	CTCAG	3 cut(s)	335, 404, 623
BseNI	ACTGG	2 cut(s)	147, 432
BseXI	GCAGC	1 cut(s)	459
BshFI	GGCC	2 cut(s)	441, 466
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	217, 610
BsiSI	CCGG	2 cut(s)	467, 674
BslI	CCNNNNNNNGG	2 cut(s)	462, 560
BsnI	GGCC	2 cut(s)	441, 466
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	217, 610
Bsp13I	TCCGGA	1 cut(s)	673
Bsp143I	GATC	4 cut(s)	316, 347, 364, 547
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	2 cut(s)	441, 466
BspCNI	CTCAG	3 cut(s)	336, 403, 622
BspEI	TCCGGA	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	318, 529
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	3 cut(s)	311, 324, 542
BspQI	GCTCTTC	1 cut(s)	711
BspT104I	TTCGAA	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	147, 432
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	4 cut(s)	316, 347, 364, 547
BssSI	CACGAG	1 cut(s)	603
Bst2BI	CACGAG	1 cut(s)	603
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	2 cut(s)	661, 711
BstBI	TTCGAA	1 cut(s)	158
BstDEI	CTNAG	3 cut(s)	344, 390, 609
BstF5I	GGATG	2 cut(s)	634, 682
BstKTI	GATC	4 cut(s)	319, 350, 367, 550
BstMBI	GATC	4 cut(s)	316, 347, 364, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 472
BstNSI	RCATGY	3 cut(s)	207, 229, 505
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	2 cut(s)	417, 492
BstV1I	GCAGC	1 cut(s)	459
BstX2I	RGATCY	2 cut(s)	316, 364
BstYI	RGATCY	2 cut(s)	316, 364
BsuRI	GGCC	2 cut(s)	441, 466
BtsCI	GGATG	2 cut(s)	634, 682
BtsI	GCAGTG	2 cut(s)	5, 377
BtsIMutI	CAGTG	2 cut(s)	5, 377
BveI	ACCTGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	528, 613
CviAII	CATG	6 cut(s)	166, 204, 226, 502, 515, 524
CviJI	RGCY	9 cut(s)	374, 429, 441, 466, 472, 509, 564, 637, 721
CviKI_1	RGCY	9 cut(s)	374, 429, 441, 466, 472, 509, 564, 637, 721
CviQI	GTAC	2 cut(s)	528, 613
DdeI	CTNAG	3 cut(s)	344, 390, 609
DpnI	GATC	4 cut(s)	318, 349, 366, 549
DpnII	GATC	4 cut(s)	316, 347, 364, 547
EaeI	YGGCCR	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	661, 711
EarI	CTCTTC	2 cut(s)	661, 711
EciI	GGCGGA	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	696
EcoRV	GATATC	1 cut(s)	171
FaeI	CATG	6 cut(s)	169, 207, 229, 505, 518, 527
FatI	CATG	6 cut(s)	165, 203, 225, 501, 514, 523
FauNDI	CATATG	2 cut(s)	77, 401
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	473
FokI	GGATG	2 cut(s)	641, 689
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	4 cut(s)	117, 285, 333, 510
GluI	GCNGC	1 cut(s)	473
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	2 cut(s)	441, 466
HapII	CCGG	2 cut(s)	467, 674
Hin1II	CATG	6 cut(s)	169, 207, 229, 505, 518, 527
HpaII	CCGG	2 cut(s)	467, 674
HphI	GGTGA	2 cut(s)	267, 314
Hpy166II	GTNNAC	2 cut(s)	305, 499
Hpy188I	TCNGA	6 cut(s)	345, 352, 393, 595, 715, 727
Hpy188III	TCNNGA	2 cut(s)	166, 674
Hpy8I	GTNNAC	2 cut(s)	305, 499
HpyAV	CCTTC	2 cut(s)	91, 330
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 472
HpyF3I	CTNAG	3 cut(s)	344, 390, 609
Hsp92II	CATG	6 cut(s)	169, 207, 229, 505, 518, 527
Kpn2I	TCCGGA	1 cut(s)	673
KpnI	GGTACC	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	316, 347, 364, 547
LguI	GCTCTTC	1 cut(s)	711
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	7 cut(s)	160, 423, 429, 445, 480, 648, 687
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	4 cut(s)	117, 285, 333, 510
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	4 cut(s)	318, 349, 366, 549
MboI	GATC	4 cut(s)	316, 347, 364, 547
MboII	GAAGA	4 cut(s)	349, 678, 702, 728
MflI	RGATCY	2 cut(s)	316, 364
MhlI	GDGCHC	2 cut(s)	217, 610
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	5 cut(s)	34, 57, 141, 192, 687
MluNI	TGGCCA	1 cut(s)	441
MnlI	CCTC	8 cut(s)	86, 252, 291, 393, 399, 468, 578, 627
Mox20I	TGGCCA	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	673
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	3 cut(s)	60, 423, 572
Msp20I	TGGCCA	1 cut(s)	441
MspI	CCGG	2 cut(s)	467, 674
MspR9I	CCNGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	235, 472
NciI	CCSGG	1 cut(s)	468
NdeI	CATATG	2 cut(s)	77, 401
NdeII	GATC	4 cut(s)	316, 347, 364, 547
NlaIII	CATG	6 cut(s)	169, 207, 229, 505, 518, 527
NlaIV	GGNNCC	2 cut(s)	318, 529
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	3 cut(s)	207, 229, 505
NspV	TTCGAA	1 cut(s)	158
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	2 cut(s)	203, 501
PciSI	GCTCTTC	1 cut(s)	711
PkrI	GCNGC	1 cut(s)	474
PscI	ACATGT	2 cut(s)	203, 501
PshBI	ATTAAT	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	318, 529
PspPI	GGNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	2 cut(s)	316, 364
RsaI	GTAC	2 cut(s)	529, 614
RsaNI	GTAC	2 cut(s)	528, 613
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	60, 423, 572
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	4 cut(s)	316, 347, 364, 547
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	217, 610
SetI	ASST	7 cut(s)	341, 376, 418, 431, 511, 533, 687
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	2 cut(s)	417, 492
SfuI	TTCGAA	1 cut(s)	158
Sse9I	AATT	5 cut(s)	34, 57, 141, 192, 687
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	4 cut(s)	117, 285, 333, 510
StyD4I	CCNGG	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	158
TasI	AATT	5 cut(s)	34, 57, 141, 192, 687
TatI	WGTACW	1 cut(s)	612
Tru1I	TTAA	3 cut(s)	60, 423, 572
Tru9I	TTAA	3 cut(s)	60, 423, 572
TscAI	CASTG	2 cut(s)	12, 384
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	7 cut(s)	64, 126, 230, 238, 397, 512, 693
TspRI	CASTG	2 cut(s)	12, 384
VspI	ATTAAT	1 cut(s)	60
XceI	RCATGY	3 cut(s)	207, 229, 505
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	4 cut(s)	117, 285, 333, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.