Rh3AG250800
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000652
Physical Location & Seq
Forward (+)
27033228 .. 27035398
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG250800.1

Sequence Viewer

Length: 318 bp
ATGCAGACACTTCTAAGGCTGACAATAAGCACTTGGAACGTTGTTGGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGGATTTCTTCAGAAGAGCCATCGGATATCTACATGTTCAATGGAATGGCAGAGCTTTTGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

4.9

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 38 - 104 5.9e-13 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 308
AccIII TCCGGA 1 cut(s) 55
AclI AACGTT 1 cut(s) 39
AclWI GGATC 2 cut(s) 229, 293
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 2 cut(s) 121, 254
AluBI AGCT 3 cut(s) 136, 157, 184
AluI AGCT 3 cut(s) 136, 157, 184
AlwI GGATC 2 cut(s) 229, 293
Aor13HI TCCGGA 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 235, 268
BbvI GCAGC 1 cut(s) 171
BccI CCATC 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 200
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 161
BseAI TCCGGA 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 200
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 161
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 56, 218
BslI CCNNNNNNNGG 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 234, 298
Bsp19I CCATGG 1 cut(s) 200
BspEI TCCGGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 2 cut(s) 229, 293
BspQI GCTCTTC 2 cut(s) 90, 194
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 2 cut(s) 234, 298
BssT1I CCWWGG 1 cut(s) 200
Bst6I CTCTTC 3 cut(s) 43, 90, 194
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 2 cut(s) 237, 301
BstMBI GATC 2 cut(s) 234, 298
BstMWI GCNNNNNNNGC 2 cut(s) 181, 218
BstNSI RCATGY 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 200
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 168
CviAII CATG 3 cut(s) 115, 201, 222
CviJI RGCY 8 cut(s) 19, 100, 136, 152, 157, 184, 226, 294
CviKI_1 RGCY 8 cut(s) 19, 100, 136, 152, 157, 184, 226, 294
DdeI CTNAG 1 cut(s) 14
DpnI GATC 2 cut(s) 236, 300
DpnII GATC 2 cut(s) 234, 298
Eam1104I CTCTTC 3 cut(s) 43, 90, 194
EarI CTCTTC 3 cut(s) 43, 90, 194
Eco130I CCWWGG 1 cut(s) 200
Eco32I GATATC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 75
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 200
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 3 cut(s) 118, 204, 225
FaiI YATR 8 cut(s) 116, 149, 171, 202, 208, 210, 223, 285
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FatI CATG 3 cut(s) 114, 200, 221
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 185
HapII CCGG 2 cut(s) 56, 218
Hin1II CATG 3 cut(s) 118, 204, 225
HindIII AAGCTT 1 cut(s) 155
HpaII CCGG 2 cut(s) 56, 218
HphI GGTGA 2 cut(s) 235, 268
Hpy188I TCNGA 2 cut(s) 94, 106
Hpy188III TCNNGA 2 cut(s) 56, 232
HpyAV CCTTC 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 4, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 218
HpyF3I CTNAG 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 3 cut(s) 118, 204, 225
Kpn2I TCCGGA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 234, 298
LguI GCTCTTC 2 cut(s) 90, 194
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 4 cut(s) 69, 174, 231, 259
Lsp1109I GCAGC 1 cut(s) 171
MaeII ACGT 1 cut(s) 39
MalI GATC 2 cut(s) 236, 300
MboI GATC 2 cut(s) 234, 298
MboII GAAGA 4 cut(s) 60, 81, 107, 181
MflI RGATCY 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 25, 289
MnlI CCTC 2 cut(s) 239, 249
MroI TCCGGA 1 cut(s) 55
MspI CCGG 2 cut(s) 56, 218
MwoI GCNNNNNNNGC 2 cut(s) 181, 218
NcoI CCATGG 1 cut(s) 200
NdeI CATATG 1 cut(s) 208
NdeII GATC 2 cut(s) 234, 298
NlaIII CATG 3 cut(s) 118, 204, 225
NlaIV GGNNCC 1 cut(s) 227
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PciSI GCTCTTC 2 cut(s) 90, 194
PflMI CCANNNNNTGG 1 cut(s) 308
PkrI GCNGC 1 cut(s) 186
PscI ACATGT 1 cut(s) 114
PsiI TTATAA 1 cut(s) 171
Psp1406I AACGTT 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 227
PsuI RGATCY 1 cut(s) 234
SapI GCTCTTC 2 cut(s) 90, 194
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 2 cut(s) 234, 298
SetI ASST 8 cut(s) 42, 69, 138, 159, 186, 248, 281, 317
SfcI CTRYAG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
StyI CCWWGG 1 cut(s) 200
TaiI ACGT 1 cut(s) 42
TscAI CASTG 1 cut(s) 168
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 1 cut(s) 168
Van91I CCANNNNNTGG 1 cut(s) 308
XceI RCATGY 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.