Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

67715184 .. 67722242

Gene Structure 7059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG482100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGTCGTGTTATTACCTTTTTATATCCGCCTTCTTTTGGCTATCAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACACAAAGGATGTGAGGCTGACAATAAGCACTTGGAATGTTGCTAGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGGATTTCTTCAGAAAAGCCATCGGATATCTACATGTTCAATGGAATGGCAGAACTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTAAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGGCGTAGAAGATGCAAAAGGAGATGGAAAGAAGAATCTTGGCTTGTGGGTATTTTTTGTTAATCCCGGTTGTGTATTAAACCTAGTTATATTTTATAGGCCTATTGGAGCCATACCTTCTTCAATGCTAGGATTGGAGACTCTGACAGGAGACTTGGATTACTTTGGTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0004445 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0030258 GO:0032501 GO:0032502 GO:0032957 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042221 GO:0042578 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048856 GO:0050896 GO:0052745 GO:0052866 GO:0071545 GO:0071704 GO:0090351 GO:0097305 GO:0106019 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

193

Amino Acids

21.91

Weight (kDa)

9.32

Isoelectric Point (pI)

45.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	324, 388
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	38, 403
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	217, 531
AluBI	AGCT	2 cut(s)	253, 280
AluI	AGCT	2 cut(s)	253, 280
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	539, 552
AlwI	GGATC	2 cut(s)	324, 388
Aor13HI	TCCGGA	1 cut(s)	151
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	2 cut(s)	330, 363
AvaII	GGWCC	1 cut(s)	575
BauI	CACGAG	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	2 cut(s)	205, 425
BcgI	CGANNNNNNTGC	2 cut(s)	216, 250
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	2 cut(s)	539, 552
BfaI	CTAG	3 cut(s)	141, 491, 536
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	2 cut(s)	322, 517
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 403
Bse1I	ACTGG	1 cut(s)	257
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	2 cut(s)	112, 160
BseLI	CCNNNNNNNGG	2 cut(s)	38, 403
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	152, 313, 474
BslI	CCNNNNNNNGG	2 cut(s)	38, 403
BsmAI	GTCTC	2 cut(s)	539, 552
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp13I	TCCGGA	1 cut(s)	151
Bsp143I	GATC	2 cut(s)	329, 393
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	322, 517
BspPI	GGATC	2 cut(s)	324, 388
BspQI	GCTCTTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	2 cut(s)	329, 393
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	296
Bst2BI	CACGAG	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	139, 290
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	2 cut(s)	112, 160
BstKTI	GATC	2 cut(s)	332, 396
BstMAI	GTCTC	2 cut(s)	539, 552
BstMBI	GATC	2 cut(s)	329, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	2 cut(s)	112, 160
BtsIMutI	CAGTG	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	575
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	211, 297, 317
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	331, 395
DpnII	GATC	2 cut(s)	329, 393
Eam1104I	CTCTTC	2 cut(s)	139, 290
EarI	CTCTTC	2 cut(s)	139, 290
EciI	GGCGGA	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	508
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	3 cut(s)	214, 300, 320
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	3 cut(s)	210, 296, 316
FauNDI	CATATG	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	119, 167
Fsp4HI	GCNGC	1 cut(s)	281
FspBI	CTAG	3 cut(s)	141, 491, 536
GluI	GCNGC	1 cut(s)	281
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	3 cut(s)	152, 313, 474
Hin1II	CATG	3 cut(s)	214, 300, 320
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	442, 547
HpaII	CCGG	3 cut(s)	152, 313, 474
HphI	GGTGA	2 cut(s)	330, 363
Hpy188I	TCNGA	4 cut(s)	73, 190, 202, 552
Hpy188III	TCNNGA	2 cut(s)	152, 327
HpyAV	CCTTC	3 cut(s)	42, 401, 534
HpyCH4V	TGCA	2 cut(s)	308, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	214, 300, 320
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	329, 393
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	2 cut(s)	326, 515
LpnPI	CCDG	6 cut(s)	165, 270, 326, 354, 487, 540
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	141, 491, 536
MalI	GATC	2 cut(s)	331, 395
MboI	GATC	2 cut(s)	329, 393
MboII	GAAGA	6 cut(s)	156, 177, 277, 428, 451, 519
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	4 cut(s)	56, 105, 334, 344
MroI	TCCGGA	1 cut(s)	151
MseI	TTAA	4 cut(s)	50, 347, 468, 485
MspI	CCGG	3 cut(s)	152, 313, 474
MspR9I	CCNGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	1 cut(s)	277
NciI	CCSGG	1 cut(s)	474
NcoI	CCATGG	1 cut(s)	296
NdeI	CATATG	1 cut(s)	304
NdeII	GATC	2 cut(s)	329, 393
NlaIII	CATG	3 cut(s)	214, 300, 320
NlaIV	GGNNCC	2 cut(s)	322, 517
NspI	RCATGY	1 cut(s)	214
PceI	AGGCCT	1 cut(s)	508
PciI	ACATGT	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	442
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
PscI	ACATGT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	322, 517
PspPI	GGNCC	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	50, 347, 468, 485
SatI	GCNGC	1 cut(s)	281
Sau3AI	GATC	2 cut(s)	329, 393
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	8 cut(s)	20, 165, 255, 282, 343, 376, 492, 526
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SseBI	AGGCCT	1 cut(s)	508
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	3 cut(s)	141, 491, 536
StuI	AGGCCT	1 cut(s)	508
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	296
TaqI	TCGA	1 cut(s)	236
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	442
Tru1I	TTAA	4 cut(s)	50, 347, 468, 485
Tru9I	TTAA	4 cut(s)	50, 347, 468, 485
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	575
XceI	RCATGY	1 cut(s)	214
XspI	CTAG	3 cut(s)	141, 491, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.