RchiOBHm_Chr7g0187161
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000652
Physical Location & Seq
Reverse (-)
6939442 .. 6942745
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16706

Sequence Viewer

Length: 177 bp
ATGCTTTTCGCTTTGGGGGGCTTTGTCCTGTCAAGAGAAAATATAAAGAAATGGTGGATATGGGGCTACTGGATATCACCTTTGATGTATGGGCAGAATGCAATTGTAGTTAATGAATTCCTTGGCAAGAGTTGGTCACATGTAAGTGGTGTCGCCTTTAGCAAGCACACAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

58

Amino Acids

6.7

Weight (kDa)

9.7

Isoelectric Point (pI)

22.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 1 - 40 1.9e-10 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 139
ApoI RAATTY 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 74
BsmI GAATGC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 164
CviAII CATG 1 cut(s) 140
CviJI RGCY 2 cut(s) 21, 66
CviKI_1 RGCY 2 cut(s) 21, 66
Eco130I CCWWGG 1 cut(s) 121
Eco32I GATATC 1 cut(s) 75
EcoRI GAATTC 1 cut(s) 116
EcoRV GATATC 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 1 cut(s) 143
FaiI YATR 4 cut(s) 44, 61, 90, 141
FatI CATG 1 cut(s) 139
Hin1II CATG 1 cut(s) 143
HphI GGTGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 33
HpyCH4V TGCA 1 cut(s) 101
Hsp92II CATG 1 cut(s) 143
LpnPI CCDG 2 cut(s) 41, 55
MaeIII GTNAC 1 cut(s) 135
MfeI CAATTG 1 cut(s) 102
MluCI AATT 3 cut(s) 102, 116, 171
MseI TTAA 2 cut(s) 111, 175
MslI CAYNNNNRTG 1 cut(s) 144
MunI CAATTG 1 cut(s) 102
Mva1269I GAATGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 135
NspI RCATGY 1 cut(s) 143
PciI ACATGT 1 cut(s) 139
PctI GAATGC 1 cut(s) 103
PscI ACATGT 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 111, 175
SetI ASST 1 cut(s) 82
SgeI CNNG 6 cut(s) 40, 45, 82, 134, 139, 152
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 3 cut(s) 102, 116, 171
StyI CCWWGG 1 cut(s) 121
TasI AATT 3 cut(s) 102, 116, 171
Tru1I TTAA 2 cut(s) 111, 175
Tru9I TTAA 2 cut(s) 111, 175
TseFI GTSAC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 129
XapI RAATTY 1 cut(s) 116
XceI RCATGY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.