Rh1BG155200
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000652
Physical Location & Seq
Forward (+)
25365196 .. 25369006
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG155200.1

Sequence Viewer

Length: 339 bp
ATGATTTTACTTGCATTGTTAGTTCAAAGGTATGTCCCTCTTGGAGCATCTGTTGCTGATTTGTATGCAGGAGCAGGTGTTATCAGATTATCATTGGCTGCTACAAGAAAATGCAGGTCTGTGAGATGCATTGAGATTAACAAAGAATCAAAGCTATCCTTTGAGAAGACGGTTGCCCGCCTGCCAAACATAGTAGATAGCAGCGTCAGCTGGCATCATGCAGACACTTCTAAGGTTAATAACCCTGGGAAAGTTTATGATCATATATTTTATGAGCTAACAGTTAGAATTATGATCATAGATAATTTCAATCTCAATTCTTTGATTACTTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cons_hypoth95 MTS

Protein Analysis

112

Amino Acids

12.6

Weight (kDa)

9.26

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 2 cut(s) 65, 105
AciI CCGC 1 cut(s) 178
AgsI TTSAA 2 cut(s) 26, 310
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 3 cut(s) 154, 210, 277
AluI AGCT 3 cut(s) 154, 210, 277
ApeKI GCWGC 2 cut(s) 98, 201
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 85, 213
BciT130I CCWGG 1 cut(s) 246
BclI TGATCA 2 cut(s) 259, 294
BfuAI ACCTGC 2 cut(s) 65, 105
BisI GCNGC 2 cut(s) 99, 202
BlsI GCNGC 2 cut(s) 100, 203
Bme1390I CCNGG 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 56, 116, 223
BpiI GAAGAC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 244, 245
BsaXI ACNNNNNCTCC 4 cut(s) 36, 63, 66, 93
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 244, 245
BseXI GCAGC 2 cut(s) 85, 213
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 259, 294
BspACI CCGC 1 cut(s) 178
BspMI ACCTGC 2 cut(s) 65, 105
BssECI CCNNGG 2 cut(s) 244, 245
BssMI GATC 2 cut(s) 259, 294
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 172, 283
BstAPI GCANNNNNTGC 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 178, 182, 212
BstDEI CTNAG 1 cut(s) 231
BstKTI GATC 2 cut(s) 262, 297
BstMBI GATC 2 cut(s) 259, 294
BstMWI GCNNNNNNNGC 2 cut(s) 53, 207
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstV1I GCAGC 2 cut(s) 85, 213
BstV2I GAAGAC 1 cut(s) 173
BveI ACCTGC 2 cut(s) 65, 105
Cac8I GCNNGC 3 cut(s) 178, 182, 212
CseI GACGC 1 cut(s) 193
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 98, 154, 210, 277
CviKI_1 RGCY 4 cut(s) 98, 154, 210, 277
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 261, 296
DpnII GATC 2 cut(s) 259, 294
EcoRII CCWGG 1 cut(s) 244
EcoT22I ATGCAT 1 cut(s) 131
FaeI CATG 1 cut(s) 221
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 217
FauI CCCGC 1 cut(s) 185
FbaI TGATCA 2 cut(s) 259, 294
Fnu4HI GCNGC 2 cut(s) 99, 202
Fsp4HI GCNGC 2 cut(s) 99, 202
GluI GCNGC 2 cut(s) 99, 202
HgaI GACGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 221
HinfI GANTC 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 172, 283
HpyCH4V TGCA 5 cut(s) 14, 68, 114, 129, 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 207
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 2 cut(s) 259, 294
Kzo9I GATC 2 cut(s) 259, 294
LmnI GCTCC 2 cut(s) 44, 71
LpnPI CCDG 7 cut(s) 54, 60, 100, 194, 196, 231, 258
Lsp1109I GCAGC 2 cut(s) 85, 213
LweI GCATC 3 cut(s) 56, 116, 223
MalI GATC 2 cut(s) 261, 296
MboI GATC 2 cut(s) 259, 294
MboII GAAGA 1 cut(s) 178
MluCI AATT 3 cut(s) 288, 304, 316
MnlI CCTC 1 cut(s) 48
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 2 cut(s) 138, 237
MspA1I CMGCKG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 2 cut(s) 53, 207
NdeII GATC 2 cut(s) 259, 294
NlaIII CATG 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 65
PasI CCCWGGG 1 cut(s) 245
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 100, 203
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 210
SaqAI TTAA 2 cut(s) 138, 237
SatI GCNGC 2 cut(s) 99, 202
Sau3AI GATC 2 cut(s) 259, 294
ScrFI CCNGG 1 cut(s) 246
SetI ASST 7 cut(s) 32, 79, 119, 156, 212, 237, 279
SfaNI GCATC 3 cut(s) 56, 116, 223
Sse9I AATT 3 cut(s) 288, 304, 316
SsiI CCGC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 172, 283
TasI AATT 3 cut(s) 288, 304, 316
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 2 cut(s) 138, 237
Tru9I TTAA 2 cut(s) 138, 237
TseI GCWGC 2 cut(s) 98, 201
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.