Rmu_sc0008717.1_g000001
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008717.1
OG0000652
Physical Location & Seq
Reverse (-)
2 .. 444
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008717.1_g000001.1.cds

Sequence Viewer

Length: 335 bp
atgcaccgcgattcagtaattaatggaggaatttatgctggcgcattattcttctccttggttgctgttatgttcaatggaatggcagagctttcgatgactatagccaagcttccagtgttttataagcacagaaagctgctcttctttccaccatgggcatatgcacttccggcatggctcctcaagatccctctcacctgtgttgaagttggtgtttgggtatttatcacctattatgtcattggctttgatccaaatgttggaagattgtttaagcaataccttctcctcctactcatgaatcaaatggcttctggattattccgattcat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

111

Amino Acids

12.73

Weight (kDa)

9.61

Isoelectric Point (pI)

28.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AccB7I CCANNNNNTGG 1 cut(s) 263
AccII CGCG 1 cut(s) 9
AciI CCGC 1 cut(s) 7
AclWI GGATC 2 cut(s) 184, 248
AcsI RAATTY 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 2 cut(s) 76, 209
AluBI AGCT 3 cut(s) 91, 112, 139
AluI AGCT 3 cut(s) 91, 112, 139
AlwI GGATC 2 cut(s) 184, 248
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 1 cut(s) 30
AseI ATTAAT 1 cut(s) 21
AspLEI GCGC 1 cut(s) 44
AsuHPI GGTGA 2 cut(s) 190, 223
BbvI GCAGC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 57, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 57, 155
BseLI CCNNNNNNNGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 2 cut(s) 173, 281
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 263
Bsp143I GATC 2 cut(s) 189, 253
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 1 cut(s) 7
BspFNI CGCG 1 cut(s) 9
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 2 cut(s) 184, 248
BspQI GCTCTTC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 57, 155
BssMI GATC 2 cut(s) 189, 253
BssT1I CCWWGG 2 cut(s) 57, 155
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 40
BstDSI CCRYGG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 2 cut(s) 192, 256
BstMBI GATC 2 cut(s) 189, 253
BstMWI GCNNNNNNNGC 2 cut(s) 136, 173
BstSFI CTRYAG 1 cut(s) 102
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 40
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 44
CviAII CATG 3 cut(s) 156, 177, 301
CviJI RGCY 7 cut(s) 91, 107, 112, 139, 181, 249, 314
CviKI_1 RGCY 7 cut(s) 91, 107, 112, 139, 181, 249, 314
DpnI GATC 2 cut(s) 191, 255
DpnII GATC 2 cut(s) 189, 253
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 2 cut(s) 57, 155
EcoT14I CCWWGG 2 cut(s) 57, 155
ErhI CCWWGG 2 cut(s) 57, 155
FaeI CATG 3 cut(s) 159, 180, 304
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 3 cut(s) 155, 176, 300
FauNDI CATATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 140
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 140
HapII CCGG 1 cut(s) 173
HhaI GCGC 1 cut(s) 44
Hin1II CATG 3 cut(s) 159, 180, 304
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 11, 304, 330
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 190, 223
Hpy188I TCNGA 1 cut(s) 329
Hpy188III TCNNGA 3 cut(s) 187, 301, 318
HpyAV CCTTC 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 4, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 173
Hsp92II CATG 3 cut(s) 159, 180, 304
HspAI GCGC 1 cut(s) 42
Kzo9I GATC 2 cut(s) 189, 253
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 186
LpnPI CCDG 5 cut(s) 24, 129, 186, 214, 303
Lsp1109I GCAGC 1 cut(s) 126
MalI GATC 2 cut(s) 191, 255
MboI GATC 2 cut(s) 189, 253
MboII GAAGA 3 cut(s) 43, 136, 279
MflI RGATCY 1 cut(s) 189
MluCI AATT 2 cut(s) 18, 30
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 4 cut(s) 20, 194, 204, 302
MseI TTAA 2 cut(s) 21, 276
MspI CCGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 136, 173
NcoI CCATGG 1 cut(s) 155
NdeI CATATG 1 cut(s) 163
NdeII GATC 2 cut(s) 189, 253
NlaIII CATG 3 cut(s) 159, 180, 304
NlaIV GGNNCC 1 cut(s) 182
PagI TCATGA 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 149
PfeI GAWTC 3 cut(s) 11, 304, 330
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 21
PsiI TTATAA 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 21, 276
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 2 cut(s) 189, 253
SetI ASST 6 cut(s) 93, 114, 141, 203, 236, 288
SfcI CTRYAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 18, 30
SsiI CCGC 1 cut(s) 7
StyI CCWWGG 2 cut(s) 57, 155
TaqI TCGA 1 cut(s) 95
TasI AATT 2 cut(s) 18, 30
TfiI GAWTC 3 cut(s) 11, 304, 330
Tru1I TTAA 2 cut(s) 21, 276
Tru9I TTAA 2 cut(s) 21, 276
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 139
TspDTI ATGAA 2 cut(s) 317, 322
TspRI CASTG 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 263
VspI ATTAAT 1 cut(s) 21
XapI RAATTY 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.