Rh7DG086600
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000652
Physical Location & Seq
Reverse (-)
7111206 .. 7113257
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG086600.1

Sequence Viewer

Length: 492 bp
ATGTTCTTGCTGGGCCTGTGGTTAGTTTGGTTTAGCCATTGTTGTTGCCATGTTTCCAAGGGTGGATCAGTGTTTTGTGCTTGTCGAATGCTTTCGACATTAGTCTTGAACCATGAGTCCAGTGGAGGTGCATTTTGCTCTGATTCATTGTCCTTAAAGCCTCCCAGGGCTTCGGAGTGCACTACAGGTAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGGATTTCTTCAGAAGAGCCATCGGATATCTACATGTTCAATCGAATGGCAGAACTTTCGATGACTATAGCCAAGCTTCCAGTGTTTTATAAGCACAGAAAGCTGCTCTTCTTTCCACCATGGGCATATGCACTTCCGGCATGGCTCCTCAAGATCCCTCTCACCTGTGTTGAAGTTGGTGTTTGGGTATTTATCACCTATTATGTCATTGGCTTTGATCCAAATGTTGGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

163

Amino Acids

18.42

Weight (kDa)

6.4

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 97 - 162 9.3e-12 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AccB7I CCANNNNNTGG 1 cut(s) 482
AccIII TCCGGA 1 cut(s) 229
AclWI GGATC 3 cut(s) 73, 403, 467
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 482
AflIII ACRYGT 1 cut(s) 288
AgsI TTSAA 3 cut(s) 109, 295, 428
AjnI CCWGG 1 cut(s) 164
AloI GAACNNNNNNTCC 2 cut(s) 101, 133
AluBI AGCT 2 cut(s) 331, 358
AluI AGCT 2 cut(s) 331, 358
Alw21I GWGCWC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 178
AlwI GGATC 3 cut(s) 73, 403, 467
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 1 cut(s) 13
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 358
Asp700I GAANNNNTTC 1 cut(s) 91
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 409, 442
BaeGI GKGCMC 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 345
BccI CCATC 1 cut(s) 283
BcgI CGANNNNNNTGC 2 cut(s) 294, 328
BciT130I CCWGG 1 cut(s) 166
BfmI CTRYAG 2 cut(s) 183, 321
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 166
BoxI GACNNNNGTC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 389
BsaJI CCNNGG 4 cut(s) 57, 164, 165, 374
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse1I ACTGG 2 cut(s) 120, 335
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 4 cut(s) 57, 164, 165, 374
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 482
BseNI ACTGG 2 cut(s) 120, 335
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 1 cut(s) 345
BseYI CCCAGC 1 cut(s) 10
BshFI GGCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 230, 392
BslI CCNNNNNNNGG 1 cut(s) 482
BsmI GAATGC 1 cut(s) 93
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 229
Bsp143I GATC 3 cut(s) 65, 408, 472
Bsp19I CCATGG 1 cut(s) 374
BspANI GGCC 1 cut(s) 15
BspEI TCCGGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 401
BspPI GGATC 3 cut(s) 73, 403, 467
BspQI GCTCTTC 2 cut(s) 264, 368
BsrI ACTGG 2 cut(s) 120, 335
BssECI CCNNGG 4 cut(s) 57, 164, 165, 374
BssMI GATC 3 cut(s) 65, 408, 472
BssT1I CCWWGG 2 cut(s) 57, 374
Bst2UI CCWGG 1 cut(s) 166
Bst6I CTCTTC 3 cut(s) 217, 264, 368
BstDSI CCRYGG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 3 cut(s) 68, 411, 475
BstMBI GATC 3 cut(s) 65, 408, 472
BstMWI GCNNNNNNNGC 2 cut(s) 355, 392
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 292
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 2 cut(s) 183, 321
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 374
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 3 cut(s) 75, 127, 342
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 5 cut(s) 50, 113, 289, 375, 396
DpnI GATC 3 cut(s) 67, 410, 474
DpnII GATC 3 cut(s) 65, 408, 472
Eam1104I CTCTTC 3 cut(s) 217, 264, 368
EarI CTCTTC 3 cut(s) 217, 264, 368
Eco130I CCWWGG 2 cut(s) 57, 374
Eco32I GATATC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 57, 374
ErhI CCWWGG 2 cut(s) 57, 374
FaeI CATG 5 cut(s) 53, 116, 292, 378, 399
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 5 cut(s) 49, 112, 288, 374, 395
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 359
GluI GCNGC 1 cut(s) 359
GsaI CCCAGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 15
HapII CCGG 2 cut(s) 230, 392
Hin1II CATG 5 cut(s) 53, 116, 292, 378, 399
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 2 cut(s) 116, 143
HpaII CCGG 2 cut(s) 230, 392
HphI GGTGA 2 cut(s) 409, 442
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 4 cut(s) 142, 175, 268, 280
Hpy188III TCNNGA 3 cut(s) 106, 230, 406
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 131, 180, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 355, 392
Hsp92II CATG 5 cut(s) 53, 116, 292, 378, 399
Kpn2I TCCGGA 1 cut(s) 229
Kzo9I GATC 3 cut(s) 65, 408, 472
LguI GCTCTTC 2 cut(s) 264, 368
LmnI GCTCC 1 cut(s) 405
Lsp1109I GCAGC 1 cut(s) 345
MalI GATC 3 cut(s) 67, 410, 474
MboI GATC 3 cut(s) 65, 408, 472
MboII GAAGA 4 cut(s) 234, 255, 281, 355
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 463
MnlI CCTC 4 cut(s) 119, 171, 413, 423
MroI TCCGGA 1 cut(s) 229
MroXI GAANNNNTTC 1 cut(s) 91
MseI TTAA 1 cut(s) 155
MspI CCGG 2 cut(s) 230, 392
MspR9I CCNGG 1 cut(s) 166
Mva1269I GAATGC 1 cut(s) 93
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 355, 392
NcoI CCATGG 1 cut(s) 374
NdeI CATATG 1 cut(s) 382
NdeII GATC 3 cut(s) 65, 408, 472
NlaIII CATG 5 cut(s) 53, 116, 292, 378, 399
NlaIV GGNNCC 1 cut(s) 401
NspI RCATGY 1 cut(s) 292
PasI CCCWGGG 1 cut(s) 165
PciI ACATGT 1 cut(s) 288
PciSI GCTCTTC 2 cut(s) 264, 368
PctI GAATGC 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PscI ACATGT 1 cut(s) 288
PshAI GACNNNNGTC 1 cut(s) 101
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 408
SapI GCTCTTC 2 cut(s) 264, 368
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 3 cut(s) 65, 408, 472
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 166
SduI GDGCHC 1 cut(s) 182
SetI ASST 8 cut(s) 130, 190, 243, 333, 360, 422, 455, 491
SfcI CTRYAG 2 cut(s) 183, 321
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 57, 374
TaqI TCGA 4 cut(s) 85, 95, 298, 314
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 3 cut(s) 75, 127, 342
TseI GCWGC 1 cut(s) 358
TspDTI ATGAA 2 cut(s) 135, 249
TspRI CASTG 3 cut(s) 75, 127, 342
Van91I CCANNNNNTGG 1 cut(s) 482
VneI GTGCAC 1 cut(s) 178
XceI RCATGY 1 cut(s) 292
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XmnI GAANNNNTTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.