MD06G1039000.v1.1

Type I inositol 1,4,5-trisphosphate 5-phosphatase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
4983426 .. 4985658
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1039000.v1.1.491

Sequence Viewer

Length: 1419 bp
ATGTTTGGCATAGGTTTCCGGTGGTTTCTTCTTTTTGATAAGTGGTTTGCCTGGTACATGCTTGTGGCAGGCTCTCACCTGTTCTGTTCTATCTGCATGTTCATTTTCTCCGATAGTATGTGCATCGTTTTTCAAGAGGTTGTCCCTTTGAATGCTGGGAATGTACTGGGAGCAGAGGATAATAAACCAATACCAAAATGGGAGACAATCATCCGAAGAACTCTGAACAGATCCTTGGAATCTGAAAGTAAACACATAAGCTACAGTGCTCCACATTCTCCGGTTGCAAAAACTTCTTCTGTCGCTGATGTGCTTGTGGATGTGATCAACGCTCATCCGTTAGGCTTGCTGGGCAAGGAATATGTTGGAGCTACTGATGGTAGCAACTTGAAACAAGGCGAATTGACCAGAGCACTCAGTATTGGAAAGAGTTTACACTGGAAGAGAACTTATGGCCTTGATTGTGACAGTAGACTAGAGTGGCCTGAGCTTTCGTTAGATGCAACCCCTCAAGTTGTCTTAACCAACTCCAAATTGCGGCGGGTGCTGAGCAGTTCCGCAAGAATTGGAGGTTTGGTGGATAATCCTTTAATATTCAGTCCTCAAGGTTTTGCACCAAAAGATGGTGGATTGAAACGATGGCACGGTAGCTCTGGGAACCTGCTGGGGTCAATTTCAGTGGAGCAGCAAGAGATGCGTCCATTTTTTGACACTCTGTCTGATGTGTCTGACAGTTTTGCGGAAGAGGAAGATGATGATACTTTTCATGAATTACCATATGAACTAGAGAAAAATGGACTTATTGACGATGATGAGGGCGCGAAATTACCTTCTACGTATGTGCGAATTGTGAGCAAGCAAATGGTAGGGATATATGTGTCTGTATGGGTACGTAAGAAGTTGAGGAGACACATCAACAATATGAAAGTATCTCCAGTTGGGGTTGGTCTAATGGGCTACATGGGAAACAAGGGATCAGTTTCTGTTAGCATGTCACTTTACCAATCGCGAATGTGCTTTGTTTGTTCTCATCTGACCTCTGGTCAGAAGGAGGGGGCTGAGCAAAGGCGGAACTCAGATGTGTATGAAATTGTACGGCGTACCTGTTTCTCATCTGTCTTTGATACGGATCAACCACTGACAATTCCATCTCATGATCAGATTTTCTGGTTTGGGGATTTGAACTATCGGCTCAATATGTCGGACACAGAGGCGAGGAGGCTCATTGCTCTCAAACGATGGGATGAACTTATCAACAATGATCAGGTGTGCTCATCATTCTCTTTACACTATCATGTTCAGTATTCCAACATAGTTCATTTTTCCCCAGTATGTGAAACGTCTGAATTCATTTTACCCTGGCAAAGATACAGGAGTTGTGTCCAAAACTCAACAGTTTCTGTAAATGTTTGGGATTGA

Protein Analysis

473

Amino Acids

53.42

Weight (kDa)

6.13

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos2 PF22669 276 - 424 6.8e-33 Endonuclease/Exonuclease/phosphatase family 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000652)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 669
AccB7I CCANNNNNTGG 1 cut(s) 623
AccI GTMKAC 1 cut(s) 472
AccII CGCG 2 cut(s) 821, 1009
AciI CCGC 5 cut(s) 538, 541, 558, 740, 1069
AclWI GGATC 3 cut(s) 225, 982, 1137
AcsI RAATTY 1 cut(s) 1346
AfaI GTAC 5 cut(s) 56, 165, 891, 1095, 1102
AfiI CCNNNNNNNGG 2 cut(s) 537, 623
AgsI TTSAA 5 cut(s) 134, 151, 391, 634, 1183
AhdI GACNNNNNGTC 2 cut(s) 715, 1041
AjnI CCWGG 2 cut(s) 50, 1358
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 4 cut(s) 261, 371, 490, 651
AluI AGCT 4 cut(s) 261, 371, 490, 651
Alw21I GWGCWC 3 cut(s) 271, 415, 1274
Alw26I GTCTC 2 cut(s) 197, 901
AlwI GGATC 3 cut(s) 225, 982, 1137
AlwNI CAGNNNCTG 2 cut(s) 983, 1400
AoxI GGCC 2 cut(s) 454, 482
ApeKI GCWGC 1 cut(s) 685
ApoI RAATTY 1 cut(s) 1346
AspLEI GCGC 1 cut(s) 821
AsuHPI GGTGA 1 cut(s) 68
BaeI ACNNNNGTAYC 2 cut(s) 1360, 1393
Bbv12I GWGCWC 3 cut(s) 271, 415, 1274
BbvI GCAGC 1 cut(s) 697
BccI CCATC 5 cut(s) 371, 617, 633, 1156, 1233
BceAI ACGGC 1 cut(s) 1112
BciT130I CCWGG 2 cut(s) 52, 1360
BclI TGATCA 3 cut(s) 324, 1156, 1261
BcoDI GTCTC 2 cut(s) 197, 901
BfaI CTAG 2 cut(s) 476, 785
BfmI CTRYAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 669
BisI GCNGC 2 cut(s) 539, 686
BlpI GCTNAGC 2 cut(s) 548, 1059
BlsI GCNGC 2 cut(s) 540, 687
Bme1390I CCNGG 2 cut(s) 52, 1360
BmeRI GACNNNNNGTC 2 cut(s) 715, 1041
BmiI GGNNCC 1 cut(s) 659
BmrFI CCNGG 2 cut(s) 52, 1360
BmrI ACTGGG 2 cut(s) 176, 1322
BmsI GCATC 3 cut(s) 132, 490, 684
BmuI ACTGGG 2 cut(s) 176, 1322
BpmI CTGGAG 1 cut(s) 918
Bpu10I CCTNAGC 1 cut(s) 486
Bpu1102I GCTNAGC 2 cut(s) 548, 1059
BpuEI CTTGAG 2 cut(s) 495, 588
BsaAI YACGTR 2 cut(s) 837, 893
BsaBI GATNNNNATC 1 cut(s) 1128
BsaJI CCNNGG 2 cut(s) 234, 1358
BsaWI WCCGGW 2 cut(s) 18, 280
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 537, 623
Bse1I ACTGG 4 cut(s) 171, 443, 935, 1328
Bse3DI GCAATG 1 cut(s) 1224
Bse8I GATNNNNATC 1 cut(s) 1128
BseBI CCWGG 2 cut(s) 52, 1360
BseDI CCNNGG 2 cut(s) 234, 1358
BseGI GGATG 4 cut(s) 210, 325, 334, 1249
BseJI GATNNNNATC 1 cut(s) 1128
BseLI CCNNNNNNNGG 2 cut(s) 537, 623
BseMI GCAATG 1 cut(s) 1224
BseMII CTCAG 5 cut(s) 430, 477, 539, 1050, 1089
BseNI ACTGG 4 cut(s) 171, 443, 935, 1328
BseRI GAGGAG 2 cut(s) 919, 1231
BseXI GCAGC 1 cut(s) 697
BseYI CCCAGC 3 cut(s) 155, 349, 664
Bsh1236I CGCG 2 cut(s) 821, 1009
BshFI GGCC 2 cut(s) 456, 484
BsiHKAI GWGCWC 3 cut(s) 271, 415, 1274
BsiSI CCGG 2 cut(s) 19, 281
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 537, 623
BsmAI GTCTC 2 cut(s) 197, 901
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 2 cut(s) 456, 484
Bsp1286I GDGCHC 3 cut(s) 271, 415, 1274
Bsp143I GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
Bsp1720I GCTNAGC 2 cut(s) 548, 1059
Bsp68I TCGCGA 1 cut(s) 1009
BspACI CCGC 5 cut(s) 538, 541, 558, 740, 1069
BspANI GGCC 2 cut(s) 456, 484
BspCNI CTCAG 5 cut(s) 429, 478, 540, 1051, 1088
BspFNI CGCG 2 cut(s) 821, 1009
BspHI TCATGA 2 cut(s) 766, 1153
BspLI GGNNCC 1 cut(s) 659
BspMI ACCTGC 1 cut(s) 669
BspPI GGATC 3 cut(s) 225, 982, 1137
BsrDI GCAATG 1 cut(s) 1224
BsrI ACTGG 4 cut(s) 171, 443, 935, 1328
BssECI CCNNGG 2 cut(s) 234, 1358
BssMI GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 2 cut(s) 52, 1360
Bst4CI ACNGT 5 cut(s) 266, 470, 647, 734, 1396
Bst6I CTCTTC 2 cut(s) 437, 738
BstAPI GCANNNNNTGC 1 cut(s) 694
BstBAI YACGTR 2 cut(s) 837, 893
BstC8I GCNNGC 3 cut(s) 70, 347, 857
BstDEI CTNAG 5 cut(s) 416, 486, 548, 1059, 1075
BstF5I GGATG 4 cut(s) 210, 325, 334, 1249
BstFNI CGCG 2 cut(s) 821, 1009
BstHHI GCGC 1 cut(s) 821
BstKTI GATC 6 cut(s) 233, 327, 977, 1132, 1159, 1264
BstMAI GTCTC 2 cut(s) 197, 901
BstMBI GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
BstMWI GCNNNNNNNGC 3 cut(s) 351, 544, 694
BstNI CCWGG 2 cut(s) 52, 1360
BstNSI RCATGY 3 cut(s) 61, 100, 994
BstSCI CCNGG 2 cut(s) 50, 1358
BstSFI CTRYAG 1 cut(s) 262
BstSNI TACGTA 2 cut(s) 837, 893
BstUI CGCG 2 cut(s) 821, 1009
BstV1I GCAGC 1 cut(s) 697
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 2 cut(s) 456, 484
BtsCI GGATG 4 cut(s) 210, 325, 334, 1249
BtsIMutI CAGTG 4 cut(s) 271, 436, 684, 1136
BtuMI TCGCGA 1 cut(s) 1009
BveI ACCTGC 1 cut(s) 669
Cac8I GCNNGC 3 cut(s) 70, 347, 857
CaiI CAGNNNCTG 2 cut(s) 983, 1400
CciI TCATGA 2 cut(s) 766, 1153
CfoI GCGC 1 cut(s) 821
CseI GACGC 1 cut(s) 686
Csp6I GTAC 5 cut(s) 55, 164, 890, 1094, 1101
CspCI CAANNNNNGTGG 2 cut(s) 660, 695
CviAII CATG 7 cut(s) 58, 97, 767, 961, 991, 1154, 1295
CviQI GTAC 5 cut(s) 55, 164, 890, 1094, 1101
DdeI CTNAG 5 cut(s) 416, 486, 548, 1059, 1075
DpnI GATC 6 cut(s) 232, 326, 976, 1131, 1158, 1263
DpnII GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
DriI GACNNNNNGTC 2 cut(s) 715, 1041
Eam1104I CTCTTC 2 cut(s) 437, 738
Eam1105I GACNNNNNGTC 2 cut(s) 715, 1041
EarI CTCTTC 2 cut(s) 437, 738
EciI GGCGGA 1 cut(s) 1084
Eco105I TACGTA 2 cut(s) 837, 893
Eco130I CCWWGG 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 1346
EcoRII CCWGG 2 cut(s) 50, 1358
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 7 cut(s) 61, 100, 770, 964, 994, 1157, 1298
FaqI GGGAC 1 cut(s) 128
FatI CATG 7 cut(s) 57, 96, 766, 960, 990, 1153, 1294
FauI CCCGC 1 cut(s) 534
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 3 cut(s) 324, 1156, 1261
FblI GTMKAC 1 cut(s) 472
Fnu4HI GCNGC 2 cut(s) 539, 686
FokI GGATG 4 cut(s) 197, 321, 332, 1256
Fsp4HI GCNGC 2 cut(s) 539, 686
FspBI CTAG 2 cut(s) 476, 785
GlaI GCGC 1 cut(s) 820
GluI GCNGC 2 cut(s) 539, 686
GsaI CCCAGC 3 cut(s) 159, 353, 668
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 2 cut(s) 456, 484
HapII CCGG 2 cut(s) 19, 281
HgaI GACGC 1 cut(s) 686
HhaI GCGC 1 cut(s) 821
Hin1II CATG 7 cut(s) 61, 100, 770, 964, 994, 1157, 1298
Hin6I GCGC 1 cut(s) 819
HinP1I GCGC 1 cut(s) 819
HinfI GANTC 1 cut(s) 239
HpaII CCGG 2 cut(s) 19, 281
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 3 cut(s) 251, 434, 473
Hpy188III TCNNGA 4 cut(s) 134, 767, 1008, 1154
Hpy8I GTNNAC 3 cut(s) 251, 434, 473
HpyAV CCTTC 2 cut(s) 840, 1042
HpyCH4III ACNGT 5 cut(s) 266, 470, 647, 734, 1396
HpyCH4IV ACGT 3 cut(s) 836, 892, 1340
HpyCH4V TGCA 5 cut(s) 96, 123, 287, 503, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 351, 544, 694
HpyF3I CTNAG 5 cut(s) 416, 486, 548, 1059, 1075
HpySE526I ACGT 3 cut(s) 836, 892, 1340
Hsp92II CATG 7 cut(s) 61, 100, 770, 964, 994, 1157, 1298
HspAI GCGC 1 cut(s) 819
Ksp22I TGATCA 3 cut(s) 324, 1156, 1261
Kzo9I GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
LmnI GCTCC 4 cut(s) 170, 274, 368, 682
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 3 cut(s) 132, 490, 684
MaeI CTAG 2 cut(s) 476, 785
MaeII ACGT 3 cut(s) 836, 892, 1340
MaeIII GTNAC 2 cut(s) 464, 993
MalI GATC 6 cut(s) 232, 326, 976, 1131, 1158, 1263
MboI GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
MboII GAAGA 6 cut(s) 20, 228, 288, 454, 755, 761
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 3 cut(s) 271, 415, 1274
MmeI TCCRAC 3 cut(s) 346, 1182, 1332
MseI TTAA 2 cut(s) 521, 590
MslI CAYNNNNRTG 2 cut(s) 62, 1293
MspI CCGG 2 cut(s) 19, 281
MspR9I CCNGG 2 cut(s) 52, 1360
Mva1269I GAATGC 1 cut(s) 157
MvaI CCWGG 2 cut(s) 52, 1360
MvnI CGCG 2 cut(s) 821, 1009
MwoI GCNNNNNNNGC 3 cut(s) 351, 544, 694
NdeI CATATG 1 cut(s) 778
NdeII GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
NlaIII CATG 7 cut(s) 61, 100, 770, 964, 994, 1157, 1298
NlaIV GGNNCC 1 cut(s) 659
NmuCI GTSAC 2 cut(s) 464, 993
NruI TCGCGA 1 cut(s) 1009
NspI RCATGY 3 cut(s) 61, 100, 994
PagI TCATGA 2 cut(s) 766, 1153
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 623
PkrI GCNGC 2 cut(s) 540, 687
Ppu21I YACGTR 2 cut(s) 837, 893
Psp6I CCWGG 2 cut(s) 50, 1358
PspFI CCCAGC 3 cut(s) 155, 349, 664
PspGI CCWGG 2 cut(s) 50, 1358
PspN4I GGNNCC 1 cut(s) 659
PstNI CAGNNNCTG 2 cut(s) 983, 1400
PsuI RGATCY 1 cut(s) 230
RruI TCGCGA 1 cut(s) 1009
RsaI GTAC 5 cut(s) 56, 165, 891, 1095, 1102
RsaNI GTAC 5 cut(s) 55, 164, 890, 1094, 1101
RseI CAYNNNNRTG 2 cut(s) 62, 1293
SaqAI TTAA 2 cut(s) 521, 590
SatI GCNGC 2 cut(s) 539, 686
Sau3AI GATC 6 cut(s) 230, 324, 974, 1129, 1156, 1261
ScrFI CCNGG 2 cut(s) 52, 1360
SduI GDGCHC 3 cut(s) 271, 415, 1274
SfaNI GCATC 3 cut(s) 132, 490, 684
SfcI CTRYAG 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 62, 1293
SmlI CTYRAG 2 cut(s) 510, 603
SmoI CTYRAG 2 cut(s) 510, 603
SnaBI TACGTA 2 cut(s) 837, 893
SsiI CCGC 5 cut(s) 538, 541, 558, 740, 1069
SspI AATATT 1 cut(s) 594
SspMI CTAG 2 cut(s) 476, 785
StyD4I CCNGG 2 cut(s) 50, 1358
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 5 cut(s) 266, 470, 647, 734, 1396
TaiI ACGT 3 cut(s) 839, 895, 1343
TatI WGTACW 1 cut(s) 163
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 521, 590
Tru9I TTAA 2 cut(s) 521, 590
TscAI CASTG 4 cut(s) 271, 443, 684, 1143
TseFI GTSAC 2 cut(s) 464, 993
TseI GCWGC 1 cut(s) 685
Tsp45I GTSAC 2 cut(s) 464, 993
TspDTI ATGAA 9 cut(s) 91, 755, 783, 795, 938, 1101, 1260, 1307, 1339
TspGWI ACGGA 2 cut(s) 327, 1142
TspRI CASTG 4 cut(s) 271, 443, 684, 1143
Van91I CCANNNNNTGG 1 cut(s) 623
XapI RAATTY 1 cut(s) 1346
XceI RCATGY 3 cut(s) 61, 100, 994
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 472
XspI CTAG 2 cut(s) 476, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.