Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Forward (+)

45765994 .. 45768424

Gene Structure 2431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG330300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGACACTGCCTTTGTGTCTTACTAAATGGTCTAATTCTGTTTCTTTGCCAAAACAAATTAATGACTTCCTTTTCATATGTGTAAAAGATAGAGGGAAGGGAAATAAATATGAAACTAGATGCCCTTATATTTATATTACAATTTCCAGTTTATTTTTGAAAATCATGATATCAACTGATTTGAACTTGGGAATTGTTGTGACATGTTTTCGTACTCTTGCCGACATGCTCTATCTGCTTCATATTTTCATCAAGTTGAGGACAACTTATATATCACCAAAAACTAGAGTTTTTGGGAGGGGTGAACTTGTTATGGATCCCAAAAAGATTGCTAGAAGGTATCTGAGATCAGATTTCTTCGTAGATCTTATAGCTACACTGCCTCTCCCTCAGATTGTCATATGGTTCATCATACCTGCAGTTAAAAGCTTCAGTTCTGGCCATACCCATAATGCCCCTCTTGGGCCGGGGCTGCGTATAATCTCATACTCTATAGTCTACATGTTAGCTAGTCATGTCTTAGGTGCTTCATGGTACCTATTATCAATCGAACGGTATGCAACTTGCTGGAAGTCTCAATGCAGAAAAGAAGTTGACCCCATCAAGTGTTTTCTCAGCTACTTGGATTGTAGTTCTTTGAACAATGATGGACGCCTGCAGTGGATAAACAGTACTCATGTGTTTAGTAACTGCAACCCGGAGAACTCCATTGGTTTCAATTATGGCATATTTGAGAATGCACTGACCAACAATGTAGTCTCCTCCTCGTTTCTAGAGAAGTACATGTGTTGTCTTTGGTGGGGATTACAGAACTTGAGATCCGCCTTCTTTTGGCTATCAATTAAGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

283

Amino Acids

32.56

Weight (kDa)

9.29

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
Acc65I	GGTACC	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	534
AccI	GTMKAC	1 cut(s)	498
AciI	CCGC	1 cut(s)	822
AclWI	GGATC	3 cut(s)	311, 324, 813
AcoI	YGGCCR	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	415
AcyI	GRCGYC	1 cut(s)	652
AfaI	GTAC	4 cut(s)	214, 536, 673, 782
AfiI	CCNNNNNNNGG	2 cut(s)	462, 831
AflIII	ACRYGT	3 cut(s)	203, 501, 783
AgsI	TTSAA	4 cut(s)	160, 184, 640, 718
AloI	GAACNNNNNNTCC	2 cut(s)	803, 835
AluBI	AGCT	4 cut(s)	374, 429, 509, 618
AluI	AGCT	4 cut(s)	374, 429, 509, 618
Alw26I	GTCTC	2 cut(s)	579, 763
AlwI	GGATC	3 cut(s)	311, 324, 813
AoxI	GGCC	2 cut(s)	439, 464
ApeKI	GCWGC	1 cut(s)	472
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	60
Asp718I	GGTACC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	2 cut(s)	468, 698
AsuHPI	GGTGA	2 cut(s)	267, 314
BalI	TGGCCA	1 cut(s)	441
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	2 cut(s)	608, 641
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BcnI	CCSGG	2 cut(s)	468, 698
BcoDI	GTCTC	2 cut(s)	579, 763
BfaI	CTAG	5 cut(s)	117, 285, 333, 510, 773
BfmI	CTRYAG	3 cut(s)	417, 492, 656
BfuAI	ACCTGC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	474
BmcAI	AGTACT	1 cut(s)	673
Bme1390I	CCNGG	2 cut(s)	468, 698
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	2 cut(s)	318, 536
BmrFI	CCNGG	2 cut(s)	468, 698
BmsI	GCATC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	835
BpuMI	CCSGG	2 cut(s)	468, 698
BsaHI	GRCGYC	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 831
Bse1I	ACTGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	467
BseLI	CCNNNNNNNGG	2 cut(s)	462, 831
BseMII	CTCAG	3 cut(s)	335, 404, 628
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	751, 754
BseXI	GCAGC	1 cut(s)	459
BshFI	GGCC	2 cut(s)	441, 466
BshNI	GGYRCC	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	467, 698
BslI	CCNNNNNNNGG	2 cut(s)	462, 831
BsmAI	GTCTC	2 cut(s)	579, 763
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	2 cut(s)	441, 466
Bsp143I	GATC	4 cut(s)	316, 347, 364, 818
BspACI	CCGC	1 cut(s)	822
BspANI	GGCC	2 cut(s)	441, 466
BspCNI	CTCAG	3 cut(s)	336, 403, 627
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	2 cut(s)	318, 536
BspMAI	CTGCAG	2 cut(s)	421, 660
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	3 cut(s)	311, 324, 813
BspT107I	GGYRCC	1 cut(s)	534
BsrI	ACTGG	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	4 cut(s)	316, 347, 364, 818
BssNI	GRCGYC	1 cut(s)	652
Bst4CI	ACNGT	2 cut(s)	555, 671
BstACI	GRCGYC	1 cut(s)	652
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	4 cut(s)	344, 390, 520, 614
BstKTI	GATC	4 cut(s)	319, 350, 367, 821
BstMAI	GTCTC	2 cut(s)	579, 763
BstMBI	GATC	4 cut(s)	316, 347, 364, 818
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 472
BstNSI	RCATGY	4 cut(s)	207, 229, 505, 787
BstSCI	CCNGG	2 cut(s)	466, 696
BstSFI	CTRYAG	3 cut(s)	417, 492, 656
BstV1I	GCAGC	1 cut(s)	459
BstX2I	RGATCY	3 cut(s)	316, 364, 818
BstYI	RGATCY	3 cut(s)	316, 364, 818
BsuRI	GGCC	2 cut(s)	441, 466
BtsI	GCAGTG	3 cut(s)	5, 377, 665
BtsIMutI	CAGTG	4 cut(s)	5, 377, 665, 740
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	1 cut(s)	656
CciI	TCATGA	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	213, 535, 672, 781
CviAII	CATG	8 cut(s)	166, 204, 226, 502, 515, 531, 677, 784
CviJI	RGCY	8 cut(s)	374, 429, 441, 466, 472, 509, 618, 835
CviKI_1	RGCY	8 cut(s)	374, 429, 441, 466, 472, 509, 618, 835
CviQI	GTAC	4 cut(s)	213, 535, 672, 781
DdeI	CTNAG	4 cut(s)	344, 390, 520, 614
DpnI	GATC	4 cut(s)	318, 349, 366, 820
DpnII	GATC	4 cut(s)	316, 347, 364, 818
EaeI	YGGCCR	1 cut(s)	439
EciI	GGCGGA	1 cut(s)	811
Eco32I	GATATC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	415
EcoRV	GATATC	1 cut(s)	171
FaeI	CATG	8 cut(s)	169, 207, 229, 505, 518, 534, 680, 787
FatI	CATG	8 cut(s)	165, 203, 225, 501, 514, 530, 676, 783
FauNDI	CATATG	2 cut(s)	77, 401
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	473
FspBI	CTAG	5 cut(s)	117, 285, 333, 510, 773
GluI	GCNGC	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	441, 466
HapII	CCGG	2 cut(s)	467, 698
HgaI	GACGC	1 cut(s)	660
Hin1I	GRCGYC	1 cut(s)	652
Hin1II	CATG	8 cut(s)	169, 207, 229, 505, 518, 534, 680, 787
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	427
HpaII	CCGG	2 cut(s)	467, 698
HphI	GGTGA	2 cut(s)	267, 314
Hpy166II	GTNNAC	3 cut(s)	305, 499, 595
Hpy188I	TCNGA	3 cut(s)	345, 352, 393
Hpy188III	TCNNGA	2 cut(s)	166, 773
Hpy8I	GTNNAC	3 cut(s)	305, 499, 595
HpyAV	CCTTC	3 cut(s)	91, 330, 835
HpyCH4III	ACNGT	2 cut(s)	555, 671
HpyCH4V	TGCA	6 cut(s)	419, 560, 582, 658, 693, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 472
HpyF3I	CTNAG	4 cut(s)	344, 390, 520, 614
Hsp92I	GRCGYC	1 cut(s)	652
Hsp92II	CATG	8 cut(s)	169, 207, 229, 505, 518, 534, 680, 787
KpnI	GGTACC	1 cut(s)	538
Kzo9I	GATC	4 cut(s)	316, 347, 364, 818
LpnPI	CCDG	7 cut(s)	160, 423, 429, 480, 553, 668, 711
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	5 cut(s)	117, 285, 333, 510, 773
MaeIII	GTNAC	2 cut(s)	199, 686
MalI	GATC	4 cut(s)	318, 349, 366, 820
MboI	GATC	4 cut(s)	316, 347, 364, 818
MboII	GAAGA	1 cut(s)	349
MflI	RGATCY	3 cut(s)	316, 364, 818
MlsI	TGGCCA	1 cut(s)	441
MluCI	AATT	6 cut(s)	34, 57, 141, 192, 718, 840
MluNI	TGGCCA	1 cut(s)	441
MnlI	CCTC	8 cut(s)	86, 252, 291, 393, 399, 468, 772, 775
Mox20I	TGGCCA	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	441
MseI	TTAA	3 cut(s)	60, 423, 843
Msp20I	TGGCCA	1 cut(s)	441
MspI	CCGG	2 cut(s)	467, 698
MspR9I	CCNGG	2 cut(s)	468, 698
Mva1269I	GAATGC	1 cut(s)	742
MwoI	GCNNNNNNNGC	2 cut(s)	235, 472
NciI	CCSGG	2 cut(s)	468, 698
NdeI	CATATG	2 cut(s)	77, 401
NdeII	GATC	4 cut(s)	316, 347, 364, 818
NlaIII	CATG	8 cut(s)	169, 207, 229, 505, 518, 534, 680, 787
NlaIV	GGNNCC	2 cut(s)	318, 536
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	4 cut(s)	207, 229, 505, 787
PagI	TCATGA	1 cut(s)	165
PciI	ACATGT	3 cut(s)	203, 501, 783
PctI	GAATGC	1 cut(s)	742
PkrI	GCNGC	1 cut(s)	474
PscI	ACATGT	3 cut(s)	203, 501, 783
PshBI	ATTAAT	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	318, 536
PspPI	GGNCC	1 cut(s)	464
PstI	CTGCAG	2 cut(s)	421, 660
PsuI	RGATCY	3 cut(s)	316, 364, 818
RsaI	GTAC	4 cut(s)	214, 536, 673, 782
RsaNI	GTAC	4 cut(s)	213, 535, 672, 781
SaqAI	TTAA	3 cut(s)	60, 423, 843
SatI	GCNGC	1 cut(s)	473
Sau3AI	GATC	4 cut(s)	316, 347, 364, 818
Sau96I	GGNCC	1 cut(s)	464
ScaI	AGTACT	1 cut(s)	673
ScrFI	CCNGG	2 cut(s)	468, 698
SetI	ASST	8 cut(s)	341, 376, 418, 431, 511, 526, 540, 620
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	3 cut(s)	417, 492, 656
SmlI	CTYRAG	1 cut(s)	814
SmoI	CTYRAG	1 cut(s)	814
Sse9I	AATT	6 cut(s)	34, 57, 141, 192, 718, 840
SsiI	CCGC	1 cut(s)	822
SspMI	CTAG	5 cut(s)	117, 285, 333, 510, 773
StyD4I	CCNGG	2 cut(s)	466, 696
TaaI	ACNGT	2 cut(s)	555, 671
TaqI	TCGA	1 cut(s)	549
TasI	AATT	6 cut(s)	34, 57, 141, 192, 718, 840
TatI	WGTACW	2 cut(s)	671, 780
Tru1I	TTAA	3 cut(s)	60, 423, 843
Tru9I	TTAA	3 cut(s)	60, 423, 843
TscAI	CASTG	4 cut(s)	12, 384, 665, 747
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	6 cut(s)	64, 126, 230, 238, 397, 519
TspRI	CASTG	4 cut(s)	12, 384, 665, 747
VspI	ATTAAT	1 cut(s)	60
XbaI	TCTAGA	1 cut(s)	772
XceI	RCATGY	4 cut(s)	207, 229, 505, 787
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	5 cut(s)	117, 285, 333, 510, 773
ZrmI	AGTACT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.