Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000652

Physical Location & Seq

Genomic Coordinates Reverse (-)

50588257 .. 50588543

Gene Structure 287 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39421

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGATATTTATTGGTTCAGATCCGCCTTCTTTTGGCTATCAGTTAAGACATAGGAGAGGAAAATCAGAAACTACTCGTGCTCAGTACATAAACACAAAGGATGTGAGGCTGACAATAAGCACTTGGAATGTTGCTGGAAGAGTTCCGGATGAAAACCTTGATATTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004439 GO:0004445 GO:0005975 GO:0006066 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0030258 GO:0032501 GO:0032502 GO:0032957 GO:0033993 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042221 GO:0042578 GO:0043647 GO:0044237 GO:0044238 GO:0044255 GO:0044262 GO:0044281 GO:0044282 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046486 GO:0046488 GO:0046838 GO:0046839 GO:0046855 GO:0046856 GO:0048856 GO:0050896 GO:0052745 GO:0052866 GO:0071545 GO:0071704 GO:0090351 GO:0097305 GO:0106019 GO:1901575 GO:1901615 GO:1901616 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

57

Amino Acids

6.55

Weight (kDa)

6.54

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18010 AT4G18010
fragaria_vesca	FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica	MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica	Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata	RLG00000003205
rosa_multiflora	Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa	Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha	Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana	Rw7G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	14
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	14
Aor13HI	TCCGGA	1 cut(s)	145
BauI	CACGAG	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	145
BseGI	GGATG	2 cut(s)	106, 154
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	94
BspEI	TCCGGA	1 cut(s)	145
BspPI	GGATC	1 cut(s)	14
BssMI	GATC	1 cut(s)	19
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	133
BstDEI	CTNAG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	106, 154
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	106, 154
Csp6I	GTAC	1 cut(s)	85
CviJI	RGCY	2 cut(s)	36, 109
CviKI_1	RGCY	2 cut(s)	36, 109
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	12
FaiI	YATR	2 cut(s)	51, 89
FokI	GGATG	2 cut(s)	113, 161
HapII	CCGG	1 cut(s)	146
HpaII	CCGG	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	19, 67
Hpy188III	TCNNGA	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	81
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	120, 159
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	150
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	50, 99
MroI	TCCGGA	1 cut(s)	145
MseI	TTAA	1 cut(s)	44
MspI	CCGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	1 cut(s)	159
SgeI	CNNG	6 cut(s)	87, 89, 135, 147, 158, 170
SsiI	CCGC	1 cut(s)	23
TatI	WGTACW	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.