Rorug05G0102000
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000652
Physical Location & Seq
Forward (+)
8976856 .. 8979628
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0102000.1

Sequence Viewer

Length: 999 bp
ATGGCAGCTCCGCTGCCTCTCATTCTCAGAAACCCTTCTTCTCTCTTAGCTCCGATCCCGACGAAGCCTCCTCTCCGTCTCCCCAACACTCACTCCCACAGCCACCACTACTCCCCTCTCTCCACAACCAAACCCTTTTCCGTCATTTCACTCTCCTCCTCCTCCTCCACCACCAGGCCCTTATTCCCCATCCTTAACTCCTCTAAGATGGAAGGGGGTGAAACCACTGGGAATGAAATCACAGAGGAAGTTACTGAGACCACAACTGAAGCAACAAGTGTGAATGGTTTGAAGAAGATTTTTGTGGCTGGTGCTACTGGGAGCACTGGTAAAAGAATTGTTGAGCAGTTACTGGCTAGGGGTTATGGAGTAAAAGCTGGAGTTCGGGACTTGGAAAAAGCCAAAACTAGTCTTCCAAGCAACAACCCAGCTCTTGAAATTGTGAAAGCAGATGTGACAGAGGGTTCTGCGAAGTTGGCAGAAGCAATTAGTAGTGATTCGGAAGCTGTGATTTGCGCTACGGGGTTTAGCTATGGATGGGATGTGTTTGCTCCATGGAAGGTTGATAATTTTGGGACAGTTAACCTTGTCGATGCATGCCGTAAAGTTGGTGTGAAGAGGTTTATTCTGGTCAGTTCCATTTTAGTCAATGGAGCATCAATGGGGCAGATTCTCAATCCGGCTTACATTTTTCTTAATATATTTGGACTCACTTTAATCGCAAAGCTTCAGGCAGAGAATTATATCAGGAAGTCTGGTATAAACTACACAATAATAAGGCCTGGTGGGTTGAGAAATGAACCTCCAACAGGGAATCTTGTGATGGAGCCAGAGGACACACTATCTGGAGGCACCATCTCCAGAGATCTGGTTGCGGAAGTAGCTATCGAGGCATTGGTCACTCCTGAAGCATCTTACAAGGTAGTTGAGATAGTTTCCAGTGCTGATGCCCCCAAGCGTACATACGAGGAACTATTTGGTTCGGTTAAGCAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

332

Amino Acids

35.46

Weight (kDa)

7.72

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 98 - 259 2.6e-18 NmrA-like family
Epimerase PF01370 100 - 261 2.3e-12 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 102 - 224 1.1e-08 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_10 PF13460 104 - 301 4.2e-45 NAD(P)H-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000652)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18010 AT4G18010
fragaria_vesca FvH4_3g43741 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310 FvH4_5g21310
malus_domestica MD06G1038900.v1.1 MD06G1039000.v1.1 MD06G1039100.v1.1
prunus_persica Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1 Prupe.5G044100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0366181 RchiOBHm_Chr3g0482901 RchiOBHm_Chr3g0496141 RchiOBHm_Chr4g0424971 RchiOBHm_Chr5g0027221 RchiOBHm_Chr5g0059741 RchiOBHm_Chr7g0179331 RchiOBHm_Chr7g0187161 RchiOBHm_Chr7g0208651
rosa_laevigata RLG00000003205
rosa_multiflora Rmu_co8056148.1_g000001 Rmu_sc0000072.1_g000010 Rmu_sc0001758.1_g000030 Rmu_sc0003032.1_g000022 Rmu_sc0005406.1_g000008 Rmu_sc0008717.1_g000001 Rmu_sc0013772.1_g000009 Rmu_sc0025894.1_g000001
rosa_roxburghii Rroxscaffold_1G00001950 Rroxscaffold_1G00024950 Rroxscaffold_3G00250340 Rroxscaffold_3G00250350 Rroxscaffold_7G00169250 Rroxscaffold_7G00182410
rosa_rugosa Rorug05G0102000 Rorug05G0153100 Rorug05G0306800 Rorug05G0360900 Rorug06G0112500 Rorug07G0105200 Rorug07G0105200
rosa_samantha Rh1BG155200 Rh1CG036100 Rh1CG073400 Rh1DG080300 Rh1DG187100 Rh2BG453300 Rh3AG250800 Rh3AG258400 Rh3AG326800 Rh3DG236500 Rh4DG084600 Rh5BG330300 Rh5BG531100 Rh5CG555400 Rh5DG341500 Rh6AG492200 Rh6CG362800 Rh6DG217600 Rh7AG084500 Rh7AG163600 Rh7AG240200 Rh7AG467900 Rh7AG482100 Rh7BG235300 Rh7CG254900 Rh7DG086600 Rh7DG246200 Rh7DG333900
rosa_wichuraiana Rw7G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 851
AciI CCGC 2 cut(s) 11, 875
AclWI GGATC 1 cut(s) 49
AcuI CTGAAG 3 cut(s) 288, 713, 927
AfaI GTAC 1 cut(s) 961
AfiI CCNNNNNNNGG 2 cut(s) 174, 809
AgsI TTSAA 2 cut(s) 292, 437
AhlI ACTAGT 1 cut(s) 407
AjnI CCWGG 2 cut(s) 173, 781
AluBI AGCT 8 cut(s) 8, 50, 377, 431, 506, 531, 727, 884
AluI AGCT 8 cut(s) 8, 50, 377, 431, 506, 531, 727, 884
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 2 cut(s) 83, 251
AlwI GGATC 1 cut(s) 49
AlwNI CAGNNNCTG 1 cut(s) 352
AoxI GGCC 2 cut(s) 176, 779
ApeKI GCWGC 2 cut(s) 5, 13
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 230
BanI GGYRCC 1 cut(s) 851
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 1 cut(s) 17
BccI CCATC 5 cut(s) 197, 202, 531, 817, 863
BceAI ACGGC 1 cut(s) 585
BciT130I CCWGG 2 cut(s) 175, 783
BcoDI GTCTC 2 cut(s) 83, 251
BcuI ACTAGT 1 cut(s) 407
BfaI CTAG 2 cut(s) 357, 408
BglII AGATCT 1 cut(s) 865
BisI GCNGC 2 cut(s) 6, 14
BlsI GCNGC 2 cut(s) 7, 15
Bme1390I CCNGG 2 cut(s) 175, 783
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 828, 853
BmrFI CCNGG 2 cut(s) 175, 783
BmrI ACTGGG 2 cut(s) 237, 327
BmsI GCATC 4 cut(s) 583, 665, 920, 937
BmuI ACTGGG 2 cut(s) 237, 327
BpiI GAAGAC 1 cut(s) 404
BpmI CTGGAG 3 cut(s) 399, 844, 867
BsaI GGTCTC 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 554
BsaXI ACNNNNNCTCC 8 cut(s) 52, 77, 82, 95, 107, 125, 313, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 809
Bse1I ACTGG 5 cut(s) 232, 322, 331, 357, 939
BseBI CCWGG 2 cut(s) 175, 783
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 3 cut(s) 189, 542, 547
BseLI CCNNNNNNNGG 2 cut(s) 174, 809
BseMII CTCAG 2 cut(s) 40, 246
BseNI ACTGG 5 cut(s) 232, 322, 331, 357, 939
BseRI GAGGAG 6 cut(s) 60, 145, 148, 151, 154, 190
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 427
BshFI GGCC 2 cut(s) 178, 781
BshNI GGYRCC 1 cut(s) 851
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 680
BslFI GGGAC 2 cut(s) 401, 589
BslI CCNNNNNNNGG 2 cut(s) 174, 809
BsmAI GTCTC 2 cut(s) 83, 251
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 2 cut(s) 401, 589
BsnI GGCC 2 cut(s) 178, 781
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 326
Bsp143I GATC 2 cut(s) 54, 865
Bsp19I CCATGG 1 cut(s) 554
BspACI CCGC 2 cut(s) 11, 875
BspANI GGCC 2 cut(s) 178, 781
BspCNI CTCAG 2 cut(s) 39, 247
BspLI GGNNCC 2 cut(s) 828, 853
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 851
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 5 cut(s) 232, 322, 331, 357, 939
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 2 cut(s) 54, 865
BssT1I CCWWGG 1 cut(s) 554
Bst2UI CCWGG 2 cut(s) 175, 783
Bst4CI ACNGT 2 cut(s) 580, 996
Bst6I CTCTTC 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 4 cut(s) 26, 46, 204, 255
BstDSI CCRYGG 1 cut(s) 554
BstENI CCTNNNNNAGG 1 cut(s) 807
BstF5I GGATG 3 cut(s) 189, 542, 547
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 2 cut(s) 57, 868
BstMAI GTCTC 2 cut(s) 83, 251
BstMBI GATC 2 cut(s) 54, 865
BstMWI GCNNNNNNNGC 3 cut(s) 476, 881, 890
BstNI CCWGG 2 cut(s) 175, 783
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 2 cut(s) 173, 781
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 865
BstXI CCANNNNNNTGG 1 cut(s) 868
BstYI RGATCY 1 cut(s) 865
BsuRI GGCC 2 cut(s) 178, 781
BtgI CCRYGG 1 cut(s) 554
BtsCI GGATG 3 cut(s) 189, 542, 547
BtsIMutI CAGTG 3 cut(s) 225, 324, 946
Cac8I GCNNGC 1 cut(s) 598
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 960
CviAII CATG 2 cut(s) 555, 597
CviQI GTAC 1 cut(s) 960
DdeI CTNAG 4 cut(s) 26, 46, 204, 255
DpnI GATC 2 cut(s) 56, 867
DpnII GATC 2 cut(s) 54, 865
Eam1104I CTCTTC 1 cut(s) 611
EarI CTCTTC 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 554
Eco147I AGGCCT 1 cut(s) 781
Eco31I GGTCTC 1 cut(s) 251
Eco57I CTGAAG 3 cut(s) 288, 713, 927
EcoNI CCTNNNNNAGG 1 cut(s) 807
EcoO109I RGGNCCY 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 173, 781
EcoT14I CCWWGG 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 554
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 2 cut(s) 558, 600
FaiI YATR 8 cut(s) 366, 534, 556, 598, 701, 744, 761, 964
FaqI GGGAC 2 cut(s) 401, 589
FatI CATG 2 cut(s) 554, 596
Fnu4HI GCNGC 2 cut(s) 6, 14
FokI GGATG 3 cut(s) 176, 549, 554
Fsp4HI GCNGC 2 cut(s) 6, 14
FspBI CTAG 2 cut(s) 357, 408
GlaI GCGC 1 cut(s) 517
GluI GCNGC 2 cut(s) 6, 14
GsaI CCCAGC 1 cut(s) 431
GsuI CTGGAG 3 cut(s) 399, 844, 867
HaeIII GGCC 2 cut(s) 178, 781
HapII CCGG 1 cut(s) 680
HhaI GCGC 1 cut(s) 518
Hin1II CATG 2 cut(s) 558, 600
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 4 cut(s) 497, 670, 708, 814
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 1 cut(s) 680
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 3 cut(s) 29, 54, 502
Hpy188III TCNNGA 7 cut(s) 58, 386, 434, 748, 846, 861, 905
Hpy8I GTNNAC 1 cut(s) 583
Hpy99I CGWCG 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 45, 206, 553
HpyCH4III ACNGT 2 cut(s) 580, 996
HpyCH4V TGCA 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 476, 881, 890
HpyF3I CTNAG 4 cut(s) 26, 46, 204, 255
Hsp92II CATG 2 cut(s) 558, 600
HspAI GCGC 1 cut(s) 516
KspAI GTTAAC 1 cut(s) 583
Kzo9I GATC 2 cut(s) 54, 865
LmnI GCTCC 6 cut(s) 13, 55, 321, 556, 653, 826
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 4 cut(s) 583, 665, 920, 937
MaeI CTAG 2 cut(s) 357, 408
MaeIII GTNAC 4 cut(s) 250, 348, 454, 898
MalI GATC 2 cut(s) 56, 867
MboI GATC 2 cut(s) 54, 865
MboII GAAGA 5 cut(s) 30, 304, 307, 404, 628
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 5 cut(s) 336, 438, 486, 568, 739
MlyI GAGTC 1 cut(s) 702
MmeI TCCRAC 1 cut(s) 830
Mph1103I ATGCAT 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 5 cut(s) 195, 582, 696, 716, 987
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 1 cut(s) 680
MspR9I CCNGG 2 cut(s) 175, 783
MvaI CCWGG 2 cut(s) 175, 783
MwoI GCNNNNNNNGC 3 cut(s) 476, 881, 890
NcoI CCATGG 1 cut(s) 554
NdeII GATC 2 cut(s) 54, 865
NlaIII CATG 2 cut(s) 558, 600
NlaIV GGNNCC 2 cut(s) 828, 853
NmuCI GTSAC 2 cut(s) 454, 898
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 1 cut(s) 600
PaeI GCATGC 1 cut(s) 600
PceI AGGCCT 1 cut(s) 781
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 3 cut(s) 497, 670, 814
PkrI GCNGC 2 cut(s) 7, 15
PleI GAGTC 1 cut(s) 702
PpsI GAGTC 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 173, 781
PspFI CCCAGC 1 cut(s) 427
PspGI CCWGG 2 cut(s) 173, 781
PspN4I GGNNCC 2 cut(s) 828, 853
PspPI GGNCC 1 cut(s) 177
PstNI CAGNNNCTG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 865
RsaI GTAC 1 cut(s) 961
RsaNI GTAC 1 cut(s) 960
SaqAI TTAA 5 cut(s) 195, 582, 696, 716, 987
SatI GCNGC 2 cut(s) 6, 14
Sau3AI GATC 2 cut(s) 54, 865
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 1 cut(s) 702
ScrFI CCNGG 2 cut(s) 175, 783
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 4 cut(s) 583, 665, 920, 937
SpeI ACTAGT 1 cut(s) 407
SphI GCATGC 1 cut(s) 600
Sse9I AATT 5 cut(s) 336, 438, 486, 568, 739
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 2 cut(s) 11, 875
SspMI CTAG 2 cut(s) 357, 408
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 2 cut(s) 173, 781
StyI CCWWGG 1 cut(s) 554
TaaI ACNGT 2 cut(s) 580, 996
TaqI TCGA 2 cut(s) 591, 888
TasI AATT 5 cut(s) 336, 438, 486, 568, 739
TfiI GAWTC 3 cut(s) 497, 670, 814
Tru1I TTAA 5 cut(s) 195, 582, 696, 716, 987
Tru9I TTAA 5 cut(s) 195, 582, 696, 716, 987
TscAI CASTG 3 cut(s) 232, 331, 946
TseFI GTSAC 2 cut(s) 454, 898
TseI GCWGC 2 cut(s) 5, 13
Tsp45I GTSAC 2 cut(s) 454, 898
TspDTI ATGAA 2 cut(s) 249, 813
TspGWI ACGGA 2 cut(s) 65, 130
TspRI CASTG 3 cut(s) 232, 331, 946
XagI CCTNNNNNAGG 1 cut(s) 807
XceI RCATGY 1 cut(s) 600
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 2 cut(s) 357, 408
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.