Rorug05G0360900
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000452
Physical Location & Seq
Forward (+)
47597501 .. 47607264
9764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0360900.1

Sequence Viewer

Length: 951 bp
ATGGGTTCCATGACACTTCCCAAAGAGCTTCCCACCATAAATTTCTCCCTCCAGGACTTGAAGCCTGGCTCAAGCTCCTGGGCTTCCACCTGCAAACAAATCCGCTATGCACTCGAAGAATACGGTTGCTTTGTGGCATTGTACCAACAAGTTTCCCCACAGCTTATGGACAATATCTTTGGCCAATCCAAGGATTTGTTCGAGGTTCCCCTCGAAAACAAAGTCAAGAACACCAGCGAGGAGCCTTACCGTGGCTATATCGGACCAAACCCGCTCATGCCGCTCTATGAAGGCATGGCCATTGATAACGTCACATCCCCACAAGAAACTCAAAAGTTCAGGGATCTCATGTGGCCTAACGGAAAGACCAAATTCTGCGAAATCACAGATCTATTTGCCAAGTTGCTCGGGGACTTGGAAAACACTGTGGAAAAGATGTTGTTCGAAAGCTTCGGGATACCCCAAGAGCAATATGAATCGTTGGCGAGTTCAAACAGTCATCTTCTTCGTTTTCTCAAGTATAGGACACCAGAAGAGAGTGACGCAAACATCAGGTTTCCGAGCCACACGGACAAGAACTTCACCACCATTGTTGTTCAGCATGATGTCGGTGGCCTCGAGGTTCTGACTAAGGATGGTGATTGGATTAGTGTTGAGTCTGCACCTTCTCAGTTCCTCTACATGGCTGGTGATGGACTTCAGGTATGGAGCAATGACAGAATAAAAGCATGCCAGCATCGAGTGAAGCACTGCGGAGACAAGACTCGATACTCGCTGGGAATGTTTACGTTTAACAATGGAGTATTCCAAGTGCCAAAAGAGTTAGTAGACGACAACCACCCACTCCTCTACAAGCAGTTCGACAGTCGTGGTTTCATAAGATTTTACACCACACCGGAGGCTAAGAAGGCAGAGTCGCCCATCAAAGCGTACTGCGGTGTTAAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

316

Amino Acids

36.01

Weight (kDa)

5.62

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 10 - 88 1.9e-13 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 172 - 263 3.6e-21 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 98
AbsI CCTCGAGG 1 cut(s) 617
Acc36I ACCTGC 1 cut(s) 98
AccBSI CCGCTC 2 cut(s) 274, 283
AccI GTMKAC 1 cut(s) 828
AciI CCGC 5 cut(s) 103, 272, 281, 753, 936
AclWI GGATC 1 cut(s) 351
AcoI YGGCCR 2 cut(s) 181, 297
AcsI RAATTY 2 cut(s) 40, 371
AcuI CTGAAG 1 cut(s) 683
AfaI GTAC 2 cut(s) 143, 932
AfiI CCNNNNNNNGG 3 cut(s) 190, 251, 682
AgsI TTSAA 2 cut(s) 61, 492
AjnI CCWGG 3 cut(s) 51, 64, 77
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AluBI AGCT 4 cut(s) 28, 75, 163, 450
AluI AGCT 4 cut(s) 28, 75, 163, 450
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 1 cut(s) 351
Ama87I CYCGRG 2 cut(s) 407, 617
AoxI GGCC 4 cut(s) 181, 297, 353, 613
ApoI RAATTY 2 cut(s) 40, 371
ArsI GACNNNNNNTTYG 4 cut(s) 161, 193, 207, 239
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 3 cut(s) 574, 650, 701
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 2 cut(s) 407, 617
AvaII GGWCC 1 cut(s) 263
BalI TGGCCA 2 cut(s) 183, 299
BccI CCATC 3 cut(s) 629, 686, 929
BciT130I CCWGG 3 cut(s) 53, 66, 79
BciVI GTATCC 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 750
BfaI CTAG 1 cut(s) 949
BfuAI ACCTGC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 450
BglII AGATCT 1 cut(s) 388
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
Bme1390I CCNGG 3 cut(s) 53, 66, 79
Bme18I GGWCC 1 cut(s) 263
BmeT110I CYCGRG 2 cut(s) 407, 617
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 3 cut(s) 7, 207, 243
BmrFI CCNGG 3 cut(s) 53, 66, 79
BmsI GCATC 1 cut(s) 745
BpmI CTGGAG 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 55, 500
BsaJI CCNNGG 3 cut(s) 78, 189, 250
BsaWI WCCGGW 1 cut(s) 895
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 251, 682
Bse3DI GCAATG 1 cut(s) 718
BseBI CCWGG 3 cut(s) 53, 66, 79
BseDI CCNNGG 3 cut(s) 78, 189, 250
BseGI GGATG 2 cut(s) 314, 640
BseLI CCNNNNNNNGG 3 cut(s) 190, 251, 682
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 1 cut(s) 683
BseRI GAGGAG 2 cut(s) 254, 836
BseYI CCCAGC 1 cut(s) 775
BsgI GTGCAG 1 cut(s) 645
BshFI GGCC 4 cut(s) 183, 299, 355, 615
BsiHKCI CYCGRG 2 cut(s) 407, 617
BsiSI CCGG 1 cut(s) 896
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 3 cut(s) 190, 251, 682
BsmAI GTCTC 1 cut(s) 750
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 4 cut(s) 183, 299, 355, 615
BsoBI CYCGRG 2 cut(s) 407, 617
Bsp119I TTCGAA 1 cut(s) 444
Bsp143I GATC 2 cut(s) 343, 388
BspACI CCGC 5 cut(s) 103, 272, 281, 753, 936
BspANI GGCC 4 cut(s) 183, 299, 355, 615
BspCNI CTCAG 1 cut(s) 682
BspLI GGNNCC 3 cut(s) 7, 207, 243
BspMI ACCTGC 1 cut(s) 98
BspPI GGATC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 444
BsrBI CCGCTC 2 cut(s) 274, 283
BsrDI GCAATG 1 cut(s) 718
BssECI CCNNGG 3 cut(s) 78, 189, 250
BssMI GATC 2 cut(s) 343, 388
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 3 cut(s) 53, 66, 79
Bst4CI ACNGT 5 cut(s) 125, 251, 427, 497, 866
Bst6I CTCTTC 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 730, 734
BstDEI CTNAG 3 cut(s) 630, 669, 903
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 314, 640
BstKTI GATC 2 cut(s) 346, 391
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 2 cut(s) 343, 388
BstMWI GCNNNNNNNGC 2 cut(s) 280, 908
BstNI CCWGG 3 cut(s) 53, 66, 79
BstNSI RCATGY 1 cut(s) 732
BstSCI CCNGG 3 cut(s) 51, 64, 77
BstX2I RGATCY 2 cut(s) 343, 388
BstYI RGATCY 2 cut(s) 343, 388
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 4 cut(s) 183, 299, 355, 615
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 314, 640
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 2 cut(s) 423, 748
BveI ACCTGC 1 cut(s) 98
Cac8I GCNNGC 2 cut(s) 730, 734
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 551
Csp6I GTAC 2 cut(s) 142, 931
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 7 cut(s) 10, 277, 295, 349, 602, 682, 729
CviQI GTAC 2 cut(s) 142, 931
DdeI CTNAG 3 cut(s) 630, 669, 903
DpnI GATC 2 cut(s) 345, 390
DpnII GATC 2 cut(s) 343, 388
EaeI YGGCCR 2 cut(s) 181, 297
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 683
Eco88I CYCGRG 2 cut(s) 407, 617
EcoRII CCWGG 3 cut(s) 51, 64, 77
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
FaqI GGGAC 1 cut(s) 425
FatI CATG 7 cut(s) 9, 276, 294, 348, 601, 681, 728
FauI CCCGC 1 cut(s) 279
FblI GTMKAC 1 cut(s) 828
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 2 cut(s) 301, 647
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 1 cut(s) 949
GluI GCNGC 1 cut(s) 281
GsaI CCCAGC 1 cut(s) 779
GsuI CTGGAG 1 cut(s) 35
HaeIII GGCC 4 cut(s) 183, 299, 355, 615
HapII CCGG 1 cut(s) 896
HgaI GACGC 1 cut(s) 551
Hin1II CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 4 cut(s) 476, 656, 763, 914
HpaII CCGG 1 cut(s) 896
HphI GGTGA 3 cut(s) 574, 650, 701
Hpy166II GTNNAC 2 cut(s) 786, 829
Hpy188I TCNGA 3 cut(s) 263, 561, 627
Hpy188III TCNNGA 2 cut(s) 226, 454
Hpy8I GTNNAC 2 cut(s) 786, 829
HpyAV CCTTC 3 cut(s) 284, 675, 901
HpyCH4III ACNGT 5 cut(s) 125, 251, 427, 497, 866
HpyCH4IV ACGT 2 cut(s) 309, 788
HpyCH4V TGCA 3 cut(s) 93, 110, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 280, 908
HpyF3I CTNAG 3 cut(s) 630, 669, 903
HpySE526I ACGT 2 cut(s) 309, 788
Hsp92II CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
Kzo9I GATC 2 cut(s) 343, 388
LmnI GCTCC 3 cut(s) 80, 241, 708
LweI GCATC 1 cut(s) 745
MaeI CTAG 1 cut(s) 949
MaeII ACGT 2 cut(s) 309, 788
MaeIII GTNAC 2 cut(s) 310, 539
MalI GATC 2 cut(s) 345, 390
MbiI CCGCTC 2 cut(s) 274, 283
MboI GATC 2 cut(s) 343, 388
MboII GAAGA 4 cut(s) 128, 494, 497, 545
MflI RGATCY 2 cut(s) 343, 388
MlsI TGGCCA 2 cut(s) 183, 299
MluCI AATT 2 cut(s) 40, 371
MluNI TGGCCA 2 cut(s) 183, 299
MlyI GAGTC 3 cut(s) 665, 757, 923
MnlI CCTC 9 cut(s) 59, 196, 221, 232, 613, 626, 686, 857, 892
Mox20I TGGCCA 2 cut(s) 183, 299
MscI TGGCCA 2 cut(s) 183, 299
MseI TTAA 2 cut(s) 792, 942
Msp20I TGGCCA 2 cut(s) 183, 299
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 3 cut(s) 53, 66, 79
MvaI CCWGG 3 cut(s) 53, 66, 79
MwoI GCNNNNNNNGC 2 cut(s) 280, 908
NdeII GATC 2 cut(s) 343, 388
NlaIII CATG 7 cut(s) 13, 280, 298, 352, 605, 685, 732
NlaIV GGNNCC 3 cut(s) 7, 207, 243
NmuCI GTSAC 2 cut(s) 310, 539
NspI RCATGY 1 cut(s) 732
NspV TTCGAA 1 cut(s) 444
PaeI GCATGC 1 cut(s) 732
PaeR7I CTCGAG 1 cut(s) 617
PaqCI CACCTGC 1 cut(s) 98
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 1 cut(s) 476
PfoI TCCNGGA 1 cut(s) 51
PkrI GCNGC 1 cut(s) 282
PleI GAGTC 3 cut(s) 664, 757, 922
PpsI GAGTC 3 cut(s) 664, 757, 922
Psp6I CCWGG 3 cut(s) 51, 64, 77
PspFI CCCAGC 1 cut(s) 775
PspGI CCWGG 3 cut(s) 51, 64, 77
PspN4I GGNNCC 3 cut(s) 7, 207, 243
PspPI GGNCC 1 cut(s) 263
PspXI VCTCGAGB 1 cut(s) 617
PsuI RGATCY 2 cut(s) 343, 388
RsaI GTAC 2 cut(s) 143, 932
RsaNI GTAC 2 cut(s) 142, 931
SaqAI TTAA 2 cut(s) 792, 942
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 343, 388
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 3 cut(s) 665, 757, 923
ScrFI CCNGG 3 cut(s) 53, 66, 79
SfaNI GCATC 1 cut(s) 745
Sfr274I CTCGAG 1 cut(s) 617
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 617
SmlI CTYRAG 3 cut(s) 70, 515, 617
SmoI CTYRAG 3 cut(s) 70, 515, 617
SphI GCATGC 1 cut(s) 732
Sse9I AATT 2 cut(s) 40, 371
SsiI CCGC 5 cut(s) 103, 272, 281, 753, 936
SspMI CTAG 1 cut(s) 949
StyD4I CCNGG 3 cut(s) 51, 64, 77
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 5 cut(s) 125, 251, 427, 497, 866
TaiI ACGT 2 cut(s) 312, 791
TaqI TCGA 8 cut(s) 114, 201, 213, 444, 618, 739, 766, 861
TasI AATT 2 cut(s) 40, 371
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 2 cut(s) 792, 942
Tru9I TTAA 2 cut(s) 792, 942
TscAI CASTG 2 cut(s) 430, 755
TseFI GTSAC 2 cut(s) 310, 539
Tsp45I GTSAC 2 cut(s) 310, 539
TspDTI ATGAA 3 cut(s) 303, 489, 865
TspGWI ACGGA 2 cut(s) 375, 584
TspRI CASTG 2 cut(s) 430, 755
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 40, 371
XceI RCATGY 1 cut(s) 732
XhoI CTCGAG 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 828
XspI CTAG 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.