Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

30713687 .. 30716231

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0272500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAAACAAAGCACTCCTCTGATTTGGGAAAAAGGCGTGCAAGAGTCTAACTTTCTCAAGGCAAGGCAGAAACTTGATGGTACGAGCCATAATATTTCAGGAGTTGTCTTAAAGTTACTGTACTTGAGACTTGAGAAGGAAGGGGAGGCCAAGAGTAGAACTCTTCAACTATCAGGAACTTCTGTCTTCTGTAGATACTCTATTGCTGATGAGGCAGCCATTGTTTTATCCATTGTCTCCGGTCTCCTCCAAACAATCTCTTTCACCGTGAGTAACGTTGCTGCACGTTCATATCTGGCCATGAAAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

103

Amino Acids

11.34

Weight (kDa)

9.61

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	297
AfaI	GTAC	2 cut(s)	82, 122
AgsI	TTSAA	1 cut(s)	167
Alw26I	GTCTC	3 cut(s)	121, 241, 248
AoxI	GGCC	2 cut(s)	147, 297
ApeKI	GCWGC	2 cut(s)	215, 281
AsuHPI	GGTGA	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	227, 268
BccI	CCATC	1 cut(s)	71
BcoDI	GTCTC	3 cut(s)	121, 241, 248
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	2 cut(s)	216, 282
BlsI	GCNGC	2 cut(s)	217, 283
BpiI	GAAGAC	1 cut(s)	178
BplI	GAGNNNNNCTC	2 cut(s)	145, 177
BpuEI	CTTGAG	3 cut(s)	41, 145, 152
BsaI	GGTCTC	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	239
BseRI	GAGGAG	2 cut(s)	6, 236
BseXI	GCAGC	2 cut(s)	227, 268
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	149, 299
BsiSI	CCGG	1 cut(s)	240
BsmAI	GTCTC	3 cut(s)	121, 241, 248
BsnI	GGCC	2 cut(s)	149, 299
Bso31I	GGTCTC	1 cut(s)	248
BspANI	GGCC	2 cut(s)	149, 299
BspTNI	GGTCTC	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	120, 268
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	38
BstMAI	GTCTC	3 cut(s)	121, 241, 248
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	227, 268
BstV2I	GAAGAC	1 cut(s)	178
BsuRI	GGCC	2 cut(s)	149, 299
Cac8I	GCNNGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	81, 121
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	4 cut(s)	87, 149, 218, 299
CviKI_1	RGCY	4 cut(s)	87, 149, 218, 299
CviQI	GTAC	2 cut(s)	81, 121
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	248
FaeI	CATG	1 cut(s)	304
FaiI	YATR	4 cut(s)	90, 292, 302, 310
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	216, 282
Fsp4HI	GCNGC	2 cut(s)	216, 282
GluI	GCNGC	2 cut(s)	216, 282
HaeIII	GGCC	2 cut(s)	149, 299
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	1 cut(s)	304
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	2 cut(s)	99, 174
HpyAV	CCTTC	2 cut(s)	130, 134
HpyCH4III	ACNGT	2 cut(s)	120, 268
HpyCH4IV	ACGT	2 cut(s)	276, 286
HpyCH4V	TGCA	2 cut(s)	40, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	276, 286
Hsp92II	CATG	1 cut(s)	304
LpnPI	CCDG	4 cut(s)	84, 159, 253, 281
Lsp1109I	GCAGC	2 cut(s)	227, 268
MaeII	ACGT	2 cut(s)	276, 286
MaeIII	GTNAC	2 cut(s)	114, 272
MboII	GAAGA	2 cut(s)	155, 178
MlsI	TGGCCA	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	4 cut(s)	27, 139, 205, 257
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	304
PkrI	GCNGC	2 cut(s)	217, 283
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	276
RsaI	GTAC	2 cut(s)	82, 122
RsaNI	GTAC	2 cut(s)	81, 121
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	2 cut(s)	216, 282
SchI	GAGTC	1 cut(s)	53
SetI	ASST	2 cut(s)	279, 289
SfcI	CTRYAG	1 cut(s)	190
SmlI	CTYRAG	3 cut(s)	56, 124, 131
SmoI	CTYRAG	3 cut(s)	56, 124, 131
SspI	AATATT	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	120, 268
TaiI	ACGT	2 cut(s)	279, 289
TatI	WGTACW	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseI	GCWGC	2 cut(s)	215, 281
TspDTI	ATGAA	2 cut(s)	17, 279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.