Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

33921949 .. 33923250

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0293800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTACAATAGACGCTGTCACTGCCAGTTTTGCTGCCTCTCTGGCGCTGGCTGACGGGGGCAAAGCACCGGATTTGGGAAAGATTGGAGGAGGTCCGGTTCGGCGGTCTACTCAATCTTTTCTCCTCGGGAAACCACTCACTCAGAAACCGGTGGACTCCAACGCCTTCAAATCCCAGTTCTTCCGGACCTGGATGGTGGAAAAGGACTTCCGCATCCAAGAAAAGGCGGACAATAGGTTTCTCTGCTCCTTTGATTTGATCAGGGATCGGAACAAGGTGCTTAAGGGTGGTGTTTGGTGCTATGACCGGGCTCCGGTCTGTCTGGAGGAGTATGATGGTATCACCCCCATCGCTGATGTCCCTCTGAAGTATGTAAGGATATGGGTTAGGGTTTCGGGTATCCCTCCTCTCTACGAGGAACCCGACAACCTCATTCTCATTGGAAACCTTCTGGGCGGCTATTTGGATTATGATAAGAAAGAATTTCGCAAAGGTGTTGTGCGCATCTTCTTCAAGCATGATATTTCAAAGCCAGTTCTTCTAGAGCGTAGGGTTTTCTTGGCCCCTGGTGTAGAGCCCTTTCTTCAGTTCCAATTCGAACATCTTAAGGGTAGATGCCCTCAGTGTGGTATGATCACGCATTCTGGGGCGAAGTGTGAGGAGGCTGTGACTCTTTCTGCTCCTGGGGTTGTGAATTTTGGTGGCGGCCCTTCTTCCTCGGGCGGCTCTTTTTCCTTCTCTGCCAAGAATCCCCGTGAGTTATCTATGCCTTCTTCCTCCCTGCTGAAAAAGAAGAAGCCTGTTATTCGACGTCTAGAGCGTTCCACCATTGAACCTACGGGTCCTGAAGGTACCGTGCTCAACACGGCAGATTTGGAAGGCACGAATCATGAGGGTGCTTTGGCGGACATGGCTACTGAGAAGCAATCTTTGACCTATAAGAAAAGAGGCCGACAAGAGGCAGCTGATCCCTCTCCTAAGAAATTCAAAACTATTTTGGGTGGCAAGCTTCTCACTCTGCATGCGGAAGCCCTTGGTTTGACTGAAGTTGAGGATGATGTCGCGCTTGTGACACTGAAGAAGAAGTTGGGCAGGCCACTTGGTAGTAGAAACAAGGGCTCCCGGCCTCACAGGAAGGTGGGATTGACCCCTTTGCGTCTTACCTATCCGGCTGCTACTACTACTCAGGAGATTGGCCCTAAAGCTAAGGGCAAGGGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

409

Amino Acids

44.78

Weight (kDa)

9.64

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	39 - 112	7.5e-08	Domain of unknown function (DUF4283)
zf-CCHC_4	PF14392	175 - 221	1.4e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	817
Acc16I	TGCGCA	1 cut(s)	506
Acc65I	GGTACC	1 cut(s)	854
AccB1I	GGYRCC	1 cut(s)	854
AccI	GTMKAC	1 cut(s)	110
AccII	CGCG	1 cut(s)	1067
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	8 cut(s)	106, 214, 230, 459, 708, 726, 908, 1028
AclWI	GGATC	2 cut(s)	276, 965
AcsI	RAATTY	3 cut(s)	485, 697, 986
AcuI	CTGAAG	5 cut(s)	389, 572, 870, 1068, 1100
AcyI	GRCGYC	1 cut(s)	814
AfaI	GTAC	1 cut(s)	856
AfiI	CCNNNNNNNGG	5 cut(s)	77, 226, 316, 629, 961
AflII	CTTAAG	2 cut(s)	284, 608
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	172, 517, 531, 836, 991
AjnI	CCWGG	3 cut(s)	191, 568, 685
AjuI	GAANNNNNNNTTGG	2 cut(s)	1073, 1105
AloI	GAACNNNNNNTCC	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	968, 1012, 1208
AluI	AGCT	3 cut(s)	968, 1012, 1208
Alw21I	GWGCWC	1 cut(s)	864
AlwI	GGATC	2 cut(s)	276, 965
Ama87I	CYCGRG	2 cut(s)	128, 721
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	6 cut(s)	564, 709, 952, 1097, 1127, 1198
ApeKI	GCWGC	3 cut(s)	35, 965, 1175
ApoI	RAATTY	3 cut(s)	485, 697, 986
AsiGI	ACCGGT	1 cut(s)	151
Asp718I	GGTACC	1 cut(s)	854
AspLEI	GCGC	3 cut(s)	49, 507, 1069
AspS9I	GGNCC	6 cut(s)	95, 189, 565, 710, 845, 1199
AsuC2I	CCSGG	2 cut(s)	311, 1126
AsuHPI	GGTGA	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	600
AvaI	CYCGRG	2 cut(s)	128, 721
AvaII	GGWCC	3 cut(s)	95, 189, 845
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	3 cut(s)	316, 582, 1124
Bbv12I	GWGCWC	1 cut(s)	864
BbvI	GCAGC	3 cut(s)	22, 977, 1162
BccI	CCATC	3 cut(s)	190, 332, 359
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	3 cut(s)	193, 570, 687
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	2 cut(s)	261, 636
BcnI	CCSGG	2 cut(s)	311, 1126
BfaI	CTAG	2 cut(s)	545, 818
BfoI	RGCGCY	1 cut(s)	50
BfrI	CTTAAG	2 cut(s)	284, 608
BfuI	GTATCC	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	6 cut(s)	36, 460, 709, 727, 966, 1176
BlsI	GCNGC	6 cut(s)	37, 461, 710, 728, 967, 1177
Bme1390I	CCNGG	5 cut(s)	193, 311, 570, 687, 1126
Bme18I	GGWCC	3 cut(s)	95, 189, 845
BmeT110I	CYCGRG	2 cut(s)	128, 721
BmgT120I	GGNCC	6 cut(s)	95, 189, 565, 710, 845, 1199
BmiI	GGNNCC	6 cut(s)	315, 423, 567, 846, 856, 1123
BmrFI	CCNGG	5 cut(s)	193, 311, 570, 687, 1126
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	3 cut(s)	225, 516, 608
BmuI	ACTGGG	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	1209
Bpu14I	TTCGAA	1 cut(s)	600
BpuMI	CCSGG	2 cut(s)	311, 1126
BsaHI	GRCGYC	1 cut(s)	814
BsaJI	CCNNGG	5 cut(s)	127, 568, 686, 720, 1036
BsaWI	WCCGGW	5 cut(s)	70, 97, 151, 186, 316
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 1106, 1136
Bsc4I	CCNNNNNNNGG	5 cut(s)	77, 226, 316, 629, 961
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	3 cut(s)	27, 178, 536
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	3 cut(s)	193, 570, 687
BseDI	CCNNGG	5 cut(s)	127, 568, 686, 720, 1036
BseGI	GGATG	3 cut(s)	201, 216, 1063
BseLI	CCNNNNNNNGG	5 cut(s)	77, 226, 316, 629, 961
BseMII	CTCAG	4 cut(s)	158, 638, 912, 1202
BseNI	ACTGG	3 cut(s)	27, 178, 536
BseRI	GAGGAG	5 cut(s)	105, 116, 344, 399, 677
BseXI	GCAGC	3 cut(s)	22, 977, 1162
Bsh1236I	CGCG	1 cut(s)	1067
BshFI	GGCC	6 cut(s)	566, 711, 954, 1099, 1129, 1200
BshNI	GGYRCC	1 cut(s)	854
BshTI	ACCGGT	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	864
BsiHKCI	CYCGRG	2 cut(s)	128, 721
BsiSI	CCGG	8 cut(s)	71, 98, 152, 187, 310, 317, 1126, 1172
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	5 cut(s)	77, 226, 316, 629, 961
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	6 cut(s)	566, 711, 954, 1099, 1129, 1200
BsoBI	CYCGRG	2 cut(s)	128, 721
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	4 cut(s)	316, 582, 864, 1124
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	261, 268, 636, 970
BspACI	CCGC	8 cut(s)	106, 214, 230, 459, 708, 726, 908, 1028
BspANI	GGCC	6 cut(s)	566, 711, 954, 1099, 1129, 1200
BspCNI	CTCAG	4 cut(s)	157, 637, 913, 1201
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	1067
BspHI	TCATGA	1 cut(s)	892
BspLI	GGNNCC	6 cut(s)	315, 423, 567, 846, 856, 1123
BspPI	GGATC	2 cut(s)	276, 965
BspT104I	TTCGAA	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	854
BspTI	CTTAAG	2 cut(s)	284, 608
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	3 cut(s)	27, 178, 536
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	5 cut(s)	127, 568, 686, 720, 1036
BssMI	GATC	4 cut(s)	261, 268, 636, 970
BssNI	GRCGYC	1 cut(s)	814
BssT1I	CCWWGG	1 cut(s)	1036
Bst2UI	CCWGG	3 cut(s)	193, 570, 687
Bst4CI	ACNGT	1 cut(s)	859
BstACI	GRCGYC	1 cut(s)	814
BstAFI	CTTAAG	2 cut(s)	284, 608
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	4 cut(s)	51, 1010, 1026, 1097
BstDEI	CTNAG	6 cut(s)	144, 624, 921, 981, 1188, 1209
BstF5I	GGATG	3 cut(s)	201, 216, 1063
BstFNI	CGCG	1 cut(s)	1067
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	3 cut(s)	49, 507, 1069
BstKTI	GATC	4 cut(s)	264, 271, 639, 973
BstMBI	GATC	4 cut(s)	261, 268, 636, 970
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 32, 44, 914
BstNI	CCWGG	3 cut(s)	193, 570, 687
BstNSI	RCATGY	1 cut(s)	1028
BstSCI	CCNGG	5 cut(s)	191, 309, 568, 685, 1124
BstUI	CGCG	1 cut(s)	1067
BstV1I	GCAGC	3 cut(s)	22, 977, 1162
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	6 cut(s)	566, 711, 954, 1099, 1129, 1200
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	201, 216, 1063
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 632, 1076
Cac8I	GCNNGC	4 cut(s)	51, 1010, 1026, 1097
CciI	TCATGA	1 cut(s)	892
CfoI	GCGC	3 cut(s)	49, 507, 1069
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	6 cut(s)	95, 189, 565, 710, 845, 1199
CseI	GACGC	2 cut(s)	23, 1148
Csp6I	GTAC	1 cut(s)	855
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	4 cut(s)	521, 893, 913, 1025
CviQI	GTAC	1 cut(s)	855
DdeI	CTNAG	6 cut(s)	144, 624, 921, 981, 1188, 1209
DpnI	GATC	4 cut(s)	263, 270, 638, 972
DpnII	GATC	4 cut(s)	261, 268, 636, 970
EciI	GGCGGA	2 cut(s)	245, 923
Eco130I	CCWWGG	1 cut(s)	1036
Eco24I	GRGCYC	3 cut(s)	316, 582, 1124
Eco47I	GGWCC	3 cut(s)	95, 189, 845
Eco57I	CTGAAG	5 cut(s)	389, 572, 870, 1068, 1100
Eco88I	CYCGRG	2 cut(s)	128, 721
EcoO109I	RGGNCCY	1 cut(s)	845
EcoRII	CCWGG	3 cut(s)	191, 568, 685
EcoT14I	CCWWGG	1 cut(s)	1036
EcoT38I	GRGCYC	3 cut(s)	316, 582, 1124
ErhI	CCWWGG	1 cut(s)	1036
FaeI	CATG	4 cut(s)	524, 896, 916, 1028
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	520, 892, 912, 1024
FbaI	TGATCA	2 cut(s)	261, 636
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	6 cut(s)	36, 460, 709, 727, 966, 1176
FokI	GGATG	3 cut(s)	203, 208, 1070
FriOI	GRGCYC	3 cut(s)	316, 582, 1124
Fsp4HI	GCNGC	6 cut(s)	36, 460, 709, 727, 966, 1176
FspAI	RTGCGCAY	1 cut(s)	506
FspBI	CTAG	2 cut(s)	545, 818
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	3 cut(s)	48, 506, 1068
GluI	GCNGC	6 cut(s)	36, 460, 709, 727, 966, 1176
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	6 cut(s)	566, 711, 954, 1099, 1129, 1200
HapII	CCGG	8 cut(s)	71, 98, 152, 187, 310, 317, 1126, 1172
HgaI	GACGC	2 cut(s)	23, 1148
HhaI	GCGC	3 cut(s)	49, 507, 1069
Hin1I	GRCGYC	1 cut(s)	814
Hin1II	CATG	4 cut(s)	524, 896, 916, 1028
Hin6I	GCGC	3 cut(s)	47, 505, 1067
HinP1I	GCGC	3 cut(s)	47, 505, 1067
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	4 cut(s)	158, 673, 751, 889
HpaII	CCGG	8 cut(s)	71, 98, 152, 187, 310, 317, 1126, 1172
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	111, 157
Hpy188I	TCNGA	3 cut(s)	147, 273, 369
Hpy188III	TCNNGA	8 cut(s)	130, 187, 326, 545, 818, 848, 893, 1190
Hpy8I	GTNNAC	2 cut(s)	111, 157
Hpy99I	CGWCG	1 cut(s)	816
HpyAV	CCTTC	8 cut(s)	178, 461, 723, 748, 783, 845, 875, 1132
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	1 cut(s)	1024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 32, 44, 914
HpyF3I	CTNAG	6 cut(s)	144, 624, 921, 981, 1188, 1209
HpySE526I	ACGT	1 cut(s)	814
Hsp92I	GRCGYC	1 cut(s)	814
Hsp92II	CATG	4 cut(s)	524, 896, 916, 1028
HspAI	GCGC	3 cut(s)	47, 505, 1067
Kpn2I	TCCGGA	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	858
Ksp22I	TGATCA	2 cut(s)	261, 636
Kzo9I	GATC	4 cut(s)	261, 268, 636, 970
LmnI	GCTCC	4 cut(s)	254, 319, 688, 1127
Lsp1109I	GCAGC	3 cut(s)	22, 977, 1162
LweI	GCATC	3 cut(s)	225, 516, 608
MaeI	CTAG	2 cut(s)	545, 818
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	3 cut(s)	19, 670, 1072
MalI	GATC	4 cut(s)	263, 270, 638, 972
MboI	GATC	4 cut(s)	261, 268, 636, 970
MhlI	GDGCHC	4 cut(s)	316, 582, 864, 1124
MluCI	AATT	4 cut(s)	485, 596, 697, 986
MlyI	GAGTC	2 cut(s)	152, 667
MmeI	TCCRAC	1 cut(s)	186
MroI	TCCGGA	1 cut(s)	186
MseI	TTAA	2 cut(s)	285, 609
MslI	CAYNNNNRTG	1 cut(s)	897
MspA1I	CMGCKG	1 cut(s)	968
MspCI	CTTAAG	2 cut(s)	284, 608
MspI	CCGG	8 cut(s)	71, 98, 152, 187, 310, 317, 1126, 1172
MspR9I	CCNGG	5 cut(s)	193, 311, 570, 687, 1126
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	3 cut(s)	193, 570, 687
MvnI	CGCG	1 cut(s)	1067
MwoI	GCNNNNNNNGC	4 cut(s)	23, 32, 44, 914
NciI	CCSGG	2 cut(s)	311, 1126
NdeII	GATC	4 cut(s)	261, 268, 636, 970
NlaIII	CATG	4 cut(s)	524, 896, 916, 1028
NlaIV	GGNNCC	6 cut(s)	315, 423, 567, 846, 856, 1123
NmuCI	GTSAC	3 cut(s)	19, 670, 1072
NsbI	TGCGCA	1 cut(s)	506
NspI	RCATGY	1 cut(s)	1028
NspV	TTCGAA	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	1028
PagI	TCATGA	1 cut(s)	892
PcsI	WCGNNNNNNNCGW	2 cut(s)	423, 820
PctI	GAATGC	1 cut(s)	643
PfeI	GAWTC	2 cut(s)	751, 889
PflFI	GACNNNGTC	1 cut(s)	17
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	6 cut(s)	37, 461, 710, 728, 967, 1177
PleI	GAGTC	2 cut(s)	152, 667
PpsI	GAGTC	2 cut(s)	152, 667
PpuMI	RGGWCCY	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	845
Psp6I	CCWGG	3 cut(s)	191, 568, 685
PspGI	CCWGG	3 cut(s)	191, 568, 685
PspN4I	GGNNCC	6 cut(s)	315, 423, 567, 846, 856, 1123
PspPI	GGNCC	6 cut(s)	95, 189, 565, 710, 845, 1199
PspPPI	RGGWCCY	1 cut(s)	845
PsyI	GACNNNGTC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	968
RsaI	GTAC	1 cut(s)	856
RsaNI	GTAC	1 cut(s)	855
RseI	CAYNNNNRTG	1 cut(s)	897
SaqAI	TTAA	2 cut(s)	285, 609
SatI	GCNGC	6 cut(s)	36, 460, 709, 727, 966, 1176
Sau3AI	GATC	4 cut(s)	261, 268, 636, 970
Sau96I	GGNCC	6 cut(s)	95, 189, 565, 710, 845, 1199
SchI	GAGTC	2 cut(s)	152, 667
ScrFI	CCNGG	5 cut(s)	193, 311, 570, 687, 1126
SduI	GDGCHC	4 cut(s)	316, 582, 864, 1124
SfaNI	GCATC	3 cut(s)	225, 516, 608
SfuI	TTCGAA	1 cut(s)	600
SinI	GGWCC	3 cut(s)	95, 189, 845
SmiMI	CAYNNNNRTG	1 cut(s)	897
SmlI	CTYRAG	2 cut(s)	284, 608
SmoI	CTYRAG	2 cut(s)	284, 608
SphI	GCATGC	1 cut(s)	1028
Sse9I	AATT	4 cut(s)	485, 596, 697, 986
SsiI	CCGC	8 cut(s)	106, 214, 230, 459, 708, 726, 908, 1028
SspMI	CTAG	2 cut(s)	545, 818
StyD4I	CCNGG	5 cut(s)	191, 309, 568, 685, 1124
StyI	CCWWGG	1 cut(s)	1036
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	2 cut(s)	600, 811
TasI	AATT	4 cut(s)	485, 596, 697, 986
TauI	GCSGC	3 cut(s)	462, 711, 729
TfiI	GAWTC	2 cut(s)	751, 889
Tru1I	TTAA	2 cut(s)	285, 609
Tru9I	TTAA	2 cut(s)	285, 609
TscAI	CASTG	3 cut(s)	28, 632, 1083
TseFI	GTSAC	3 cut(s)	19, 670, 1072
TseI	GCWGC	3 cut(s)	35, 965, 1175
Tsp45I	GTSAC	3 cut(s)	19, 670, 1072
TspRI	CASTG	3 cut(s)	28, 632, 1083
Tth111I	GACNNNGTC	1 cut(s)	17
Vha464I	CTTAAG	2 cut(s)	284, 608
VpaK11BI	GGWCC	3 cut(s)	95, 189, 845
XapI	RAATTY	3 cut(s)	485, 697, 986
XbaI	TCTAGA	2 cut(s)	544, 817
XceI	RCATGY	1 cut(s)	1028
XmiI	GTMKAC	1 cut(s)	110
XspI	CTAG	2 cut(s)	545, 818
ZraI	GACGTC	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.