Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PAE | PF03283 | 147 - 205 | 1.1e-14 | Pectinacetylesterase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 623 |
| Acc36I | ACCTGC | 1 cut(s) | 623 |
| AccII | CGCG | 2 cut(s) | 21, 142 |
| AciI | CCGC | 2 cut(s) | 142, 251 |
| AclWI | GGATC | 2 cut(s) | 81, 92 |
| AcoI | YGGCCR | 1 cut(s) | 514 |
| AcsI | RAATTY | 4 cut(s) | 457, 561, 576, 716 |
| AcuI | CTGAAG | 1 cut(s) | 575 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 572 |
| AflII | CTTAAG | 1 cut(s) | 242 |
| AgsI | TTSAA | 1 cut(s) | 178 |
| AjnI | CCWGG | 3 cut(s) | 79, 604, 670 |
| AluBI | AGCT | 4 cut(s) | 17, 130, 418, 701 |
| AluI | AGCT | 4 cut(s) | 17, 130, 418, 701 |
| Alw21I | GWGCWC | 1 cut(s) | 140 |
| Alw26I | GTCTC | 2 cut(s) | 334, 669 |
| AlwI | GGATC | 2 cut(s) | 81, 92 |
| AoxI | GGCC | 2 cut(s) | 115, 514 |
| ApeKI | GCWGC | 3 cut(s) | 623, 626, 629 |
| ApoI | RAATTY | 4 cut(s) | 457, 561, 576, 716 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 93 |
| AspLEI | GCGC | 1 cut(s) | 169 |
| AspS9I | GGNCC | 2 cut(s) | 115, 651 |
| AsuHPI | GGTGA | 3 cut(s) | 281, 647, 719 |
| AvaII | GGWCC | 1 cut(s) | 651 |
| BanII | GRGCYC | 1 cut(s) | 412 |
| Bbv12I | GWGCWC | 1 cut(s) | 140 |
| BbvI | GCAGC | 3 cut(s) | 610, 613, 616 |
| BccI | CCATC | 3 cut(s) | 93, 397, 480 |
| BceAI | ACGGC | 2 cut(s) | 76, 501 |
| BciT130I | CCWGG | 3 cut(s) | 81, 606, 672 |
| BcoDI | GTCTC | 2 cut(s) | 334, 669 |
| BfaI | CTAG | 4 cut(s) | 125, 185, 278, 648 |
| BfmI | CTRYAG | 1 cut(s) | 630 |
| BfrI | CTTAAG | 1 cut(s) | 242 |
| BfuAI | ACCTGC | 1 cut(s) | 623 |
| BisI | GCNGC | 4 cut(s) | 143, 624, 627, 630 |
| BlsI | GCNGC | 4 cut(s) | 144, 625, 628, 631 |
| Bme1390I | CCNGG | 3 cut(s) | 81, 606, 672 |
| Bme18I | GGWCC | 1 cut(s) | 651 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 651 |
| BmiI | GGNNCC | 3 cut(s) | 265, 409, 669 |
| BmrFI | CCNGG | 3 cut(s) | 81, 606, 672 |
| BmsI | GCATC | 2 cut(s) | 145, 736 |
| BoxI | GACNNNNGTC | 1 cut(s) | 251 |
| BpmI | CTGGAG | 1 cut(s) | 693 |
| Bpu10I | CCTNAGC | 1 cut(s) | 119 |
| BsaBI | GATNNNNATC | 1 cut(s) | 300 |
| BsaI | GGTCTC | 1 cut(s) | 669 |
| BsaJI | CCNNGG | 3 cut(s) | 80, 511, 679 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 210, 240 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 572 |
| Bse118I | RCCGGY | 1 cut(s) | 266 |
| Bse3DI | GCAATG | 1 cut(s) | 176 |
| Bse8I | GATNNNNATC | 1 cut(s) | 300 |
| BseBI | CCWGG | 3 cut(s) | 81, 606, 672 |
| BseDI | CCNNGG | 3 cut(s) | 80, 511, 679 |
| BseGI | GGATG | 2 cut(s) | 408, 491 |
| BseJI | GATNNNNATC | 1 cut(s) | 300 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 572 |
| BseMI | GCAATG | 1 cut(s) | 176 |
| BseMII | CTCAG | 4 cut(s) | 42, 110, 572, 669 |
| BseX3I | CGGCCG | 1 cut(s) | 514 |
| BseXI | GCAGC | 3 cut(s) | 610, 613, 616 |
| BseYI | CCCAGC | 1 cut(s) | 414 |
| Bsh1236I | CGCG | 2 cut(s) | 21, 142 |
| Bsh1285I | CGRYCG | 2 cut(s) | 255, 517 |
| BshFI | GGCC | 2 cut(s) | 117, 516 |
| BsiEI | CGRYCG | 2 cut(s) | 255, 517 |
| BsiHKAI | GWGCWC | 1 cut(s) | 140 |
| BsiSI | CCGG | 1 cut(s) | 267 |
| BslFI | GGGAC | 1 cut(s) | 116 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 572 |
| BsmAI | GTCTC | 2 cut(s) | 334, 669 |
| BsmFI | GGGAC | 1 cut(s) | 116 |
| BsnI | GGCC | 2 cut(s) | 117, 516 |
| Bso31I | GGTCTC | 1 cut(s) | 669 |
| Bsp1286I | GDGCHC | 2 cut(s) | 140, 412 |
| Bsp143I | GATC | 3 cut(s) | 73, 84, 462 |
| Bsp19I | CCATGG | 1 cut(s) | 679 |
| BspACI | CCGC | 2 cut(s) | 142, 251 |
| BspANI | GGCC | 2 cut(s) | 117, 516 |
| BspCNI | CTCAG | 4 cut(s) | 43, 111, 573, 668 |
| BspFNI | CGCG | 2 cut(s) | 21, 142 |
| BspHI | TCATGA | 1 cut(s) | 724 |
| BspLI | GGNNCC | 3 cut(s) | 265, 409, 669 |
| BspMAI | CTGCAG | 1 cut(s) | 634 |
| BspMI | ACCTGC | 1 cut(s) | 623 |
| BspPI | GGATC | 2 cut(s) | 81, 92 |
| BspTI | CTTAAG | 1 cut(s) | 242 |
| BspTNI | GGTCTC | 1 cut(s) | 669 |
| BsrDI | GCAATG | 1 cut(s) | 176 |
| BsrFI | RCCGGY | 1 cut(s) | 266 |
| BssAI | RCCGGY | 1 cut(s) | 266 |
| BssECI | CCNNGG | 3 cut(s) | 80, 511, 679 |
| BssMI | GATC | 3 cut(s) | 73, 84, 462 |
| BssT1I | CCWWGG | 1 cut(s) | 679 |
| Bst2UI | CCWGG | 3 cut(s) | 81, 606, 672 |
| Bst4CI | ACNGT | 2 cut(s) | 238, 393 |
| BstAFI | CTTAAG | 1 cut(s) | 242 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 746 |
| BstC8I | GCNNGC | 2 cut(s) | 19, 140 |
| BstDEI | CTNAG | 5 cut(s) | 51, 119, 581, 655, 694 |
| BstDSI | CCRYGG | 1 cut(s) | 679 |
| BstF5I | GGATG | 2 cut(s) | 408, 491 |
| BstFNI | CGCG | 2 cut(s) | 21, 142 |
| BstHHI | GCGC | 1 cut(s) | 169 |
| BstKTI | GATC | 3 cut(s) | 76, 87, 465 |
| BstMAI | GTCTC | 2 cut(s) | 334, 669 |
| BstMBI | GATC | 3 cut(s) | 73, 84, 462 |
| BstMCI | CGRYCG | 2 cut(s) | 255, 517 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 164, 263, 629, 746 |
| BstNI | CCWGG | 3 cut(s) | 81, 606, 672 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 251 |
| BstSCI | CCNGG | 3 cut(s) | 79, 604, 670 |
| BstSFI | CTRYAG | 1 cut(s) | 630 |
| BstUI | CGCG | 2 cut(s) | 21, 142 |
| BstV1I | GCAGC | 3 cut(s) | 610, 613, 616 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BstZI | CGGCCG | 1 cut(s) | 514 |
| BsuRI | GGCC | 2 cut(s) | 117, 516 |
| BtgI | CCRYGG | 1 cut(s) | 679 |
| BtgZI | GCGATG | 1 cut(s) | 168 |
| BtsCI | GGATG | 2 cut(s) | 408, 491 |
| BtsIMutI | CAGTG | 2 cut(s) | 201, 234 |
| BveI | ACCTGC | 1 cut(s) | 623 |
| Cac8I | GCNNGC | 2 cut(s) | 19, 140 |
| CciI | TCATGA | 1 cut(s) | 724 |
| CfoI | GCGC | 1 cut(s) | 169 |
| Cfr10I | RCCGGY | 1 cut(s) | 266 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 651 |
| CseI | GACGC | 2 cut(s) | 10, 738 |
| CviAII | CATG | 4 cut(s) | 383, 680, 725, 737 |
| DdeI | CTNAG | 5 cut(s) | 51, 119, 581, 655, 694 |
| DpnI | GATC | 3 cut(s) | 75, 86, 464 |
| DpnII | GATC | 3 cut(s) | 73, 84, 462 |
| EaeI | YGGCCR | 1 cut(s) | 514 |
| EagI | CGGCCG | 1 cut(s) | 514 |
| EclXI | CGGCCG | 1 cut(s) | 514 |
| Eco130I | CCWWGG | 1 cut(s) | 679 |
| Eco24I | GRGCYC | 1 cut(s) | 412 |
| Eco31I | GGTCTC | 1 cut(s) | 669 |
| Eco47I | GGWCC | 1 cut(s) | 651 |
| Eco52I | CGGCCG | 1 cut(s) | 514 |
| Eco57I | CTGAAG | 1 cut(s) | 575 |
| EcoO109I | RGGNCCY | 1 cut(s) | 651 |
| EcoRI | GAATTC | 2 cut(s) | 576, 716 |
| EcoRII | CCWGG | 3 cut(s) | 79, 604, 670 |
| EcoT14I | CCWWGG | 1 cut(s) | 679 |
| EcoT38I | GRGCYC | 1 cut(s) | 412 |
| ErhI | CCWWGG | 1 cut(s) | 679 |
| FaeI | CATG | 4 cut(s) | 386, 683, 728, 740 |
| FaiI | YATR | 9 cut(s) | 190, 299, 378, 384, 662, 681, 726, 738, 770 |
| FaqI | GGGAC | 1 cut(s) | 116 |
| FatI | CATG | 4 cut(s) | 382, 679, 724, 736 |
| Fnu4HI | GCNGC | 4 cut(s) | 143, 624, 627, 630 |
| FokI | GGATG | 2 cut(s) | 415, 498 |
| FriOI | GRGCYC | 1 cut(s) | 412 |
| Fsp4HI | GCNGC | 4 cut(s) | 143, 624, 627, 630 |
| FspBI | CTAG | 4 cut(s) | 125, 185, 278, 648 |
| GlaI | GCGC | 1 cut(s) | 168 |
| GluI | GCNGC | 4 cut(s) | 143, 624, 627, 630 |
| GsaI | CCCAGC | 1 cut(s) | 418 |
| GsuI | CTGGAG | 1 cut(s) | 693 |
| HaeIII | GGCC | 2 cut(s) | 117, 516 |
| HapII | CCGG | 1 cut(s) | 267 |
| HgaI | GACGC | 2 cut(s) | 10, 738 |
| HhaI | GCGC | 1 cut(s) | 169 |
| Hin1II | CATG | 4 cut(s) | 386, 683, 728, 740 |
| Hin6I | GCGC | 1 cut(s) | 167 |
| HinP1I | GCGC | 1 cut(s) | 167 |
| HincII | GTYRAC | 2 cut(s) | 453, 781 |
| HindII | GTYRAC | 2 cut(s) | 453, 781 |
| HinfI | GANTC | 4 cut(s) | 178, 231, 301, 733 |
| HpaI | GTTAAC | 1 cut(s) | 453 |
| HpaII | CCGG | 1 cut(s) | 267 |
| HphI | GGTGA | 3 cut(s) | 281, 647, 719 |
| Hpy166II | GTNNAC | 3 cut(s) | 389, 453, 781 |
| Hpy188I | TCNGA | 5 cut(s) | 52, 230, 306, 355, 582 |
| Hpy188III | TCNNGA | 3 cut(s) | 446, 573, 725 |
| Hpy8I | GTNNAC | 3 cut(s) | 389, 453, 781 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 754 |
| HpyAV | CCTTC | 3 cut(s) | 83, 476, 550 |
| HpyCH4III | ACNGT | 2 cut(s) | 238, 393 |
| HpyCH4V | TGCA | 4 cut(s) | 158, 285, 632, 740 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 164, 263, 629, 746 |
| HpyF3I | CTNAG | 5 cut(s) | 51, 119, 581, 655, 694 |
| Hsp92II | CATG | 4 cut(s) | 386, 683, 728, 740 |
| HspAI | GCGC | 1 cut(s) | 167 |
| KspAI | GTTAAC | 1 cut(s) | 453 |
| Kzo9I | GATC | 3 cut(s) | 73, 84, 462 |
| LmnI | GCTCC | 2 cut(s) | 263, 407 |
| Lsp1109I | GCAGC | 3 cut(s) | 610, 613, 616 |
| LweI | GCATC | 2 cut(s) | 145, 736 |
| MaeI | CTAG | 4 cut(s) | 125, 185, 278, 648 |
| MaeIII | GTNAC | 3 cut(s) | 28, 491, 499 |
| MalI | GATC | 3 cut(s) | 75, 86, 464 |
| MboI | GATC | 3 cut(s) | 73, 84, 462 |
| MboII | GAAGA | 1 cut(s) | 173 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MhlI | GDGCHC | 2 cut(s) | 140, 412 |
| MluCI | AATT | 7 cut(s) | 344, 457, 505, 561, 576, 710, 716 |
| MlyI | GAGTC | 1 cut(s) | 742 |
| MmeI | TCCRAC | 1 cut(s) | 208 |
| MnlI | CCTC | 7 cut(s) | 35, 46, 469, 521, 658, 664, 732 |
| MroXI | GAANNNNTTC | 1 cut(s) | 93 |
| MseI | TTAA | 5 cut(s) | 243, 366, 452, 600, 790 |
| MspCI | CTTAAG | 1 cut(s) | 242 |
| MspI | CCGG | 1 cut(s) | 267 |
| MspR9I | CCNGG | 3 cut(s) | 81, 606, 672 |
| MvaI | CCWGG | 3 cut(s) | 81, 606, 672 |
| MvnI | CGCG | 2 cut(s) | 21, 142 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 164, 263, 629, 746 |
| NcoI | CCATGG | 1 cut(s) | 679 |
| NdeII | GATC | 3 cut(s) | 73, 84, 462 |
| NlaIII | CATG | 4 cut(s) | 386, 683, 728, 740 |
| NlaIV | GGNNCC | 3 cut(s) | 265, 409, 669 |
| NmeAIII | GCCGAG | 1 cut(s) | 492 |
| NmuCI | GTSAC | 1 cut(s) | 499 |
| PagI | TCATGA | 1 cut(s) | 724 |
| PaqCI | CACCTGC | 1 cut(s) | 623 |
| PdmI | GAANNNNTTC | 1 cut(s) | 93 |
| PfeI | GAWTC | 3 cut(s) | 178, 231, 301 |
| PkrI | GCNGC | 4 cut(s) | 144, 625, 628, 631 |
| PleI | GAGTC | 1 cut(s) | 741 |
| PpsI | GAGTC | 1 cut(s) | 741 |
| PpuMI | RGGWCCY | 1 cut(s) | 651 |
| PshAI | GACNNNNGTC | 1 cut(s) | 251 |
| Psp5II | RGGWCCY | 1 cut(s) | 651 |
| Psp6I | CCWGG | 3 cut(s) | 79, 604, 670 |
| PspFI | CCCAGC | 1 cut(s) | 414 |
| PspGI | CCWGG | 3 cut(s) | 79, 604, 670 |
| PspN4I | GGNNCC | 3 cut(s) | 265, 409, 669 |
| PspPI | GGNCC | 2 cut(s) | 115, 651 |
| PspPPI | RGGWCCY | 1 cut(s) | 651 |
| PstI | CTGCAG | 1 cut(s) | 634 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| SaqAI | TTAA | 5 cut(s) | 243, 366, 452, 600, 790 |
| SatI | GCNGC | 4 cut(s) | 143, 624, 627, 630 |
| Sau3AI | GATC | 3 cut(s) | 73, 84, 462 |
| Sau96I | GGNCC | 2 cut(s) | 115, 651 |
| SchI | GAGTC | 1 cut(s) | 742 |
| ScrFI | CCNGG | 3 cut(s) | 81, 606, 672 |
| SduI | GDGCHC | 2 cut(s) | 140, 412 |
| SfaNI | GCATC | 2 cut(s) | 145, 736 |
| SfcI | CTRYAG | 1 cut(s) | 630 |
| SinI | GGWCC | 1 cut(s) | 651 |
| SmlI | CTYRAG | 1 cut(s) | 242 |
| SmoI | CTYRAG | 1 cut(s) | 242 |
| Sse9I | AATT | 7 cut(s) | 344, 457, 505, 561, 576, 710, 716 |
| SsiI | CCGC | 2 cut(s) | 142, 251 |
| SspMI | CTAG | 4 cut(s) | 125, 185, 278, 648 |
| StyD4I | CCNGG | 3 cut(s) | 79, 604, 670 |
| StyI | CCWWGG | 1 cut(s) | 679 |
| TaaI | ACNGT | 2 cut(s) | 238, 393 |
| TaqI | TCGA | 3 cut(s) | 87, 97, 461 |
| TasI | AATT | 7 cut(s) | 344, 457, 505, 561, 576, 710, 716 |
| TauI | GCSGC | 1 cut(s) | 145 |
| TfiI | GAWTC | 3 cut(s) | 178, 231, 301 |
| Tru1I | TTAA | 5 cut(s) | 243, 366, 452, 600, 790 |
| Tru9I | TTAA | 5 cut(s) | 243, 366, 452, 600, 790 |
| TscAI | CASTG | 2 cut(s) | 201, 241 |
| TseFI | GTSAC | 1 cut(s) | 499 |
| TseI | GCWGC | 3 cut(s) | 623, 626, 629 |
| Tsp45I | GTSAC | 1 cut(s) | 499 |
| TspDTI | ATGAA | 2 cut(s) | 314, 528 |
| TspRI | CASTG | 2 cut(s) | 201, 241 |
| Vha464I | CTTAAG | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 651 |
| XapI | RAATTY | 4 cut(s) | 457, 561, 576, 716 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 422 |
| XmnI | GAANNNNTTC | 1 cut(s) | 93 |
| XspI | CTAG | 4 cut(s) | 125, 185, 278, 648 |