Rorug07G0185600

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
15559323 .. 15562903
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0185600.1

Sequence Viewer

Length: 894 bp
ATGGCAGTCTCTTTTGCCACAACGACGTACACTCCAAGCCTTCAGGCCCAAGCTAGACTCTCTCACCCTCCTCCCAGTTGCTCAATCAAGCATTTTTCTGGGTTAAAGCCTGAATCTTTAGGTACTTTTGGAGCTAAAAATCCAAACTTGACAGTTGAGTTCTACAGCAAAGTTAGTAAGAGCCTTCTACCCAGCTTTATGTTTGCACTTTTCAGGACAGGAAACCACAGATCATCGCGTGCACAAGTTCGAATGATGCCAATAGGGACACCAAAGGTTCCCTATCGAACCCCTGGTGAGGGAGGTTGGCAATGGGTTGATCTGTGGAATGCTCTATACCGGGAACGTGTTATCTTCATTGGGCAAAATATAGATGAAGAGTTTAGCAATCAAATTCTGGCAACAATGCTGTACCTTGACACAATTGATTCATCCAAAAGGCTTTATATGTATATCAATGGTCCTGGTGGAGATCTTACTCCGAGCATGGCTATCTATGATACTATGCAAAGCTTAAAGAGTCCTGTTGGCACTCACTGTGTGGGCTATGCCTATAATTTGGCAGCCTTTCTTCTTGCAGCTGGAGAAAAGGGTAATCGATTTGCAATGCCACTGTCGAGAATTGCACTGCAGTCTCCTGCTGGGGCTGCTCGTGGTCAGGCTGATGACATACGCAATGAGGCAAATGAGCTTCTCAGAATCAGAGATTACCTTTTTAATGAATTGGCAGAGAAAACTGGCCAGCCAATTGAAAAGATTAACAAAGACCTAAGTCGGATGAAGCGCTTTAATGCACAGGAAGCTCTTGAGTATGGGCTCATTGATCGTGTAGTTAGGCCGCCTCGTATTAAGGCTGACTCACCTAGCAAAGATGCGGGAACAGGTCTTGGTTAG

Protein Analysis

297

Amino Acids

32.94

Weight (kDa)

9.41

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 103 - 279 1e-64 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 2 cut(s) 839, 875
AcoI YGGCCR 1 cut(s) 739
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 541
AfaI GTAC 3 cut(s) 29, 124, 413
AfeI AGCGCT 1 cut(s) 785
AfiI CCNNNNNNNGG 2 cut(s) 298, 299
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 1 cut(s) 752
AjnI CCWGG 2 cut(s) 292, 463
AluBI AGCT 7 cut(s) 53, 134, 195, 513, 581, 691, 803
AluI AGCT 7 cut(s) 53, 134, 195, 513, 581, 691, 803
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 13, 639
Alw44I GTGCAC 1 cut(s) 240
Aor51HI AGCGCT 1 cut(s) 785
AoxI GGCC 3 cut(s) 45, 739, 836
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 3 cut(s) 563, 578, 647
ApoI RAATTY 1 cut(s) 393
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 2 cut(s) 46, 461
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 3 cut(s) 56, 308, 852
AsuII TTCGAA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 244
BalI TGGCCA 1 cut(s) 741
BanII GRGCYC 1 cut(s) 819
BauI CACGAG 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 3 cut(s) 575, 590, 634
BciT130I CCWGG 2 cut(s) 294, 465
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 13, 639
BfaI CTAG 2 cut(s) 54, 864
BfmI CTRYAG 2 cut(s) 163, 629
BfoI RGCGCY 1 cut(s) 787
BglII AGATCT 1 cut(s) 472
BisI GCNGC 4 cut(s) 564, 579, 648, 839
BlsI GCNGC 4 cut(s) 565, 580, 649, 840
Bme1390I CCNGG 3 cut(s) 294, 341, 465
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 46, 461
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 3 cut(s) 294, 341, 465
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 2 cut(s) 246, 862
BmuI ACTGGG 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 771
BpmI CTGGAG 1 cut(s) 603
Bpu14I TTCGAA 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 827
BpuMI CCSGG 1 cut(s) 341
Bsa29I ATCGAT 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 2 cut(s) 298, 299
Bse1I ACTGG 2 cut(s) 75, 742
Bse3DI GCAATG 3 cut(s) 317, 612, 682
BseBI CCWGG 2 cut(s) 294, 465
BseCI ATCGAT 1 cut(s) 598
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 431, 783
BseLI CCNNNNNNNGG 2 cut(s) 298, 299
BseMI GCAATG 3 cut(s) 317, 612, 682
BseMII CTCAG 1 cut(s) 709
BseNI ACTGG 2 cut(s) 75, 742
BseRI GAGGAG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 3 cut(s) 575, 590, 634
BseYI CCCAGC 2 cut(s) 191, 641
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 3 cut(s) 47, 741, 838
BshVI ATCGAT 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 340
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 298, 299
BsmAI GTCTC 2 cut(s) 13, 639
BsmFI GGGAC 1 cut(s) 280
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 3 cut(s) 47, 741, 838
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 2 cut(s) 244, 819
Bsp143I GATC 4 cut(s) 230, 319, 472, 823
BspACI CCGC 2 cut(s) 839, 875
BspANI GGCC 3 cut(s) 47, 741, 838
BspCNI CTCAG 1 cut(s) 708
BspDI ATCGAT 1 cut(s) 598
BspFNI CGCG 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 279
BspMAI CTGCAG 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 250
BsrDI GCAATG 3 cut(s) 317, 612, 682
BsrI ACTGG 2 cut(s) 75, 742
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 4 cut(s) 230, 319, 472, 823
BssSI CACGAG 1 cut(s) 651
Bst2BI CACGAG 1 cut(s) 651
Bst2UI CCWGG 2 cut(s) 294, 465
Bst4CI ACNGT 3 cut(s) 154, 539, 615
Bst6I CTCTTC 1 cut(s) 372
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 240, 743
BstDEI CTNAG 2 cut(s) 695, 770
BstF5I GGATG 2 cut(s) 431, 783
BstFNI CGCG 1 cut(s) 238
BstH2I RGCGCY 1 cut(s) 787
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 4 cut(s) 233, 322, 475, 826
BstMAI GTCTC 2 cut(s) 13, 639
BstMBI GATC 4 cut(s) 230, 319, 472, 823
BstMWI GCNNNNNNNGC 2 cut(s) 647, 800
BstNI CCWGG 2 cut(s) 294, 465
BstPAI GACNNNNGTC 1 cut(s) 771
BstSCI CCNGG 3 cut(s) 292, 339, 463
BstSFI CTRYAG 2 cut(s) 163, 629
BstSLI GKGCMC 1 cut(s) 244
BstUI CGCG 1 cut(s) 238
BstV1I GCAGC 3 cut(s) 575, 590, 634
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
Bsu15I ATCGAT 1 cut(s) 598
BsuRI GGCC 3 cut(s) 47, 741, 838
BsuTUI ATCGAT 1 cut(s) 598
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 2 cut(s) 431, 783
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 3 cut(s) 535, 611, 626
Cac8I GCNNGC 2 cut(s) 240, 743
CfoI GCGC 1 cut(s) 786
Cfr13I GGNCC 2 cut(s) 46, 461
ClaI ATCGAT 1 cut(s) 598
Csp6I GTAC 3 cut(s) 28, 123, 412
CviAII CATG 1 cut(s) 487
CviQI GTAC 3 cut(s) 28, 123, 412
DdeI CTNAG 2 cut(s) 695, 770
DpnI GATC 4 cut(s) 232, 321, 474, 825
DpnII GATC 4 cut(s) 230, 319, 472, 823
DraIII CACNNNGTG 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 739
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 819
Eco47I GGWCC 1 cut(s) 461
Eco47III AGCGCT 1 cut(s) 785
Eco57I CTGAAG 1 cut(s) 26
EcoRII CCWGG 2 cut(s) 292, 463
EcoT38I GRGCYC 1 cut(s) 819
FaeI CATG 1 cut(s) 490
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 486
FauI CCCGC 1 cut(s) 868
Fnu4HI GCNGC 4 cut(s) 564, 579, 648, 839
FokI GGATG 2 cut(s) 418, 790
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 4 cut(s) 564, 579, 648, 839
FspBI CTAG 2 cut(s) 54, 864
GlaI GCGC 1 cut(s) 785
GluI GCNGC 4 cut(s) 564, 579, 648, 839
GsaI CCCAGC 2 cut(s) 195, 645
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 787
HaeIII GGCC 3 cut(s) 47, 741, 838
HapII CCGG 1 cut(s) 340
HhaI GCGC 1 cut(s) 786
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 6 cut(s) 57, 113, 428, 520, 699, 857
HpaII CCGG 1 cut(s) 340
HphI GGTGA 3 cut(s) 56, 308, 852
Hpy166II GTNNAC 2 cut(s) 30, 242
Hpy188I TCNGA 4 cut(s) 483, 698, 704, 777
Hpy188III TCNNGA 3 cut(s) 214, 618, 806
Hpy8I GTNNAC 2 cut(s) 30, 242
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 50, 194
HpyCH4III ACNGT 3 cut(s) 154, 539, 615
HpyCH4IV ACGT 2 cut(s) 26, 346
HpyCH4V TGCA 8 cut(s) 206, 242, 508, 578, 605, 626, 631, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 647, 800
HpyF3I CTNAG 2 cut(s) 695, 770
HpySE526I ACGT 2 cut(s) 26, 346
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 1 cut(s) 784
Kzo9I GATC 4 cut(s) 230, 319, 472, 823
LmnI GCTCC 1 cut(s) 131
Lsp1109I GCAGC 3 cut(s) 575, 590, 634
LweI GCATC 2 cut(s) 246, 862
MaeI CTAG 2 cut(s) 54, 864
MaeII ACGT 2 cut(s) 26, 346
MalI GATC 4 cut(s) 232, 321, 474, 825
MboI GATC 4 cut(s) 230, 319, 472, 823
MboII GAAGA 3 cut(s) 346, 389, 563
MfeI CAATTG 2 cut(s) 423, 747
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 2 cut(s) 244, 819
MlsI TGGCCA 1 cut(s) 741
MluCI AATT 6 cut(s) 393, 423, 556, 621, 722, 747
MluNI TGGCCA 1 cut(s) 741
MlyI GAGTC 3 cut(s) 51, 529, 851
MmeI TCCRAC 1 cut(s) 755
MnlI CCTC 6 cut(s) 78, 81, 292, 296, 673, 852
Mox20I TGGCCA 1 cut(s) 741
MscI TGGCCA 1 cut(s) 741
MseI TTAA 6 cut(s) 104, 515, 717, 759, 789, 849
Msp20I TGGCCA 1 cut(s) 741
MspA1I CMGCKG 1 cut(s) 581
MspI CCGG 1 cut(s) 340
MspR9I CCNGG 3 cut(s) 294, 341, 465
MunI CAATTG 2 cut(s) 423, 747
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 2 cut(s) 294, 465
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 647, 800
NciI CCSGG 1 cut(s) 341
NdeII GATC 4 cut(s) 230, 319, 472, 823
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 279
NspV TTCGAA 1 cut(s) 250
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 113, 428, 699
PkrI GCNGC 4 cut(s) 565, 580, 649, 840
PleI GAGTC 3 cut(s) 51, 528, 851
PpsI GAGTC 3 cut(s) 51, 528, 851
PshAI GACNNNNGTC 1 cut(s) 771
Psp6I CCWGG 2 cut(s) 292, 463
PspFI CCCAGC 2 cut(s) 191, 641
PspGI CCWGG 2 cut(s) 292, 463
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 2 cut(s) 46, 461
PstI CTGCAG 1 cut(s) 633
PsuI RGATCY 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 581
RsaI GTAC 3 cut(s) 29, 124, 413
RsaNI GTAC 3 cut(s) 28, 123, 412
SaqAI TTAA 6 cut(s) 104, 515, 717, 759, 789, 849
SatI GCNGC 4 cut(s) 564, 579, 648, 839
Sau3AI GATC 4 cut(s) 230, 319, 472, 823
Sau96I GGNCC 2 cut(s) 46, 461
SchI GAGTC 3 cut(s) 51, 529, 851
ScrFI CCNGG 3 cut(s) 294, 341, 465
SduI GDGCHC 2 cut(s) 244, 819
SfaNI GCATC 2 cut(s) 246, 862
SfcI CTRYAG 2 cut(s) 163, 629
SfuI TTCGAA 1 cut(s) 250
SinI GGWCC 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 806
SmoI CTYRAG 1 cut(s) 806
Sse9I AATT 6 cut(s) 393, 423, 556, 621, 722, 747
SsiI CCGC 2 cut(s) 839, 875
SspMI CTAG 2 cut(s) 54, 864
StyD4I CCNGG 3 cut(s) 292, 339, 463
TaaI ACNGT 3 cut(s) 154, 539, 615
TaiI ACGT 2 cut(s) 29, 349
TaqI TCGA 4 cut(s) 250, 286, 598, 617
TasI AATT 6 cut(s) 393, 423, 556, 621, 722, 747
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 3 cut(s) 113, 428, 699
Tru1I TTAA 6 cut(s) 104, 515, 717, 759, 789, 849
Tru9I TTAA 6 cut(s) 104, 515, 717, 759, 789, 849
TscAI CASTG 3 cut(s) 542, 618, 633
TseI GCWGC 3 cut(s) 563, 578, 647
TspDTI ATGAA 5 cut(s) 346, 390, 420, 735, 794
TspRI CASTG 3 cut(s) 542, 618, 633
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 1 cut(s) 393
XspI CTAG 2 cut(s) 54, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.