Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CLP_protease | PF00574 | 103 - 279 | 1e-64 | Clp protease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 238 |
| AciI | CCGC | 2 cut(s) | 839, 875 |
| AcoI | YGGCCR | 1 cut(s) | 739 |
| AcsI | RAATTY | 1 cut(s) | 393 |
| AcuI | CTGAAG | 1 cut(s) | 26 |
| AdeI | CACNNNGTG | 1 cut(s) | 541 |
| AfaI | GTAC | 3 cut(s) | 29, 124, 413 |
| AfeI | AGCGCT | 1 cut(s) | 785 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 298, 299 |
| AflIII | ACRYGT | 1 cut(s) | 346 |
| AgsI | TTSAA | 1 cut(s) | 752 |
| AjnI | CCWGG | 2 cut(s) | 292, 463 |
| AluBI | AGCT | 7 cut(s) | 53, 134, 195, 513, 581, 691, 803 |
| AluI | AGCT | 7 cut(s) | 53, 134, 195, 513, 581, 691, 803 |
| Alw21I | GWGCWC | 1 cut(s) | 244 |
| Alw26I | GTCTC | 2 cut(s) | 13, 639 |
| Alw44I | GTGCAC | 1 cut(s) | 240 |
| Aor51HI | AGCGCT | 1 cut(s) | 785 |
| AoxI | GGCC | 3 cut(s) | 45, 739, 836 |
| ApaLI | GTGCAC | 1 cut(s) | 240 |
| ApeKI | GCWGC | 3 cut(s) | 563, 578, 647 |
| ApoI | RAATTY | 1 cut(s) | 393 |
| AspLEI | GCGC | 1 cut(s) | 786 |
| AspS9I | GGNCC | 2 cut(s) | 46, 461 |
| AsuC2I | CCSGG | 1 cut(s) | 341 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 308, 852 |
| AsuII | TTCGAA | 1 cut(s) | 250 |
| AvaII | GGWCC | 1 cut(s) | 461 |
| BaeGI | GKGCMC | 1 cut(s) | 244 |
| BalI | TGGCCA | 1 cut(s) | 741 |
| BanII | GRGCYC | 1 cut(s) | 819 |
| BauI | CACGAG | 1 cut(s) | 651 |
| Bbv12I | GWGCWC | 1 cut(s) | 244 |
| BbvI | GCAGC | 3 cut(s) | 575, 590, 634 |
| BciT130I | CCWGG | 2 cut(s) | 294, 465 |
| BcnI | CCSGG | 1 cut(s) | 341 |
| BcoDI | GTCTC | 2 cut(s) | 13, 639 |
| BfaI | CTAG | 2 cut(s) | 54, 864 |
| BfmI | CTRYAG | 2 cut(s) | 163, 629 |
| BfoI | RGCGCY | 1 cut(s) | 787 |
| BglII | AGATCT | 1 cut(s) | 472 |
| BisI | GCNGC | 4 cut(s) | 564, 579, 648, 839 |
| BlsI | GCNGC | 4 cut(s) | 565, 580, 649, 840 |
| Bme1390I | CCNGG | 3 cut(s) | 294, 341, 465 |
| Bme18I | GGWCC | 1 cut(s) | 461 |
| BmgT120I | GGNCC | 2 cut(s) | 46, 461 |
| BmiI | GGNNCC | 1 cut(s) | 279 |
| BmrFI | CCNGG | 3 cut(s) | 294, 341, 465 |
| BmrI | ACTGGG | 1 cut(s) | 69 |
| BmsI | GCATC | 2 cut(s) | 246, 862 |
| BmuI | ACTGGG | 1 cut(s) | 69 |
| BoxI | GACNNNNGTC | 1 cut(s) | 771 |
| BpmI | CTGGAG | 1 cut(s) | 603 |
| Bpu14I | TTCGAA | 1 cut(s) | 250 |
| BpuEI | CTTGAG | 1 cut(s) | 827 |
| BpuMI | CCSGG | 1 cut(s) | 341 |
| Bsa29I | ATCGAT | 1 cut(s) | 598 |
| BsaJI | CCNNGG | 1 cut(s) | 292 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 16, 46 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 298, 299 |
| Bse1I | ACTGG | 2 cut(s) | 75, 742 |
| Bse3DI | GCAATG | 3 cut(s) | 317, 612, 682 |
| BseBI | CCWGG | 2 cut(s) | 294, 465 |
| BseCI | ATCGAT | 1 cut(s) | 598 |
| BseDI | CCNNGG | 1 cut(s) | 292 |
| BseGI | GGATG | 2 cut(s) | 431, 783 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 298, 299 |
| BseMI | GCAATG | 3 cut(s) | 317, 612, 682 |
| BseMII | CTCAG | 1 cut(s) | 709 |
| BseNI | ACTGG | 2 cut(s) | 75, 742 |
| BseRI | GAGGAG | 1 cut(s) | 60 |
| BseSI | GKGCMC | 1 cut(s) | 244 |
| BseXI | GCAGC | 3 cut(s) | 575, 590, 634 |
| BseYI | CCCAGC | 2 cut(s) | 191, 641 |
| Bsh1236I | CGCG | 1 cut(s) | 238 |
| BshFI | GGCC | 3 cut(s) | 47, 741, 838 |
| BshVI | ATCGAT | 1 cut(s) | 598 |
| BsiHKAI | GWGCWC | 1 cut(s) | 244 |
| BsiSI | CCGG | 1 cut(s) | 340 |
| BslFI | GGGAC | 1 cut(s) | 280 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 298, 299 |
| BsmAI | GTCTC | 2 cut(s) | 13, 639 |
| BsmFI | GGGAC | 1 cut(s) | 280 |
| BsmI | GAATGC | 1 cut(s) | 334 |
| BsnI | GGCC | 3 cut(s) | 47, 741, 838 |
| Bsp119I | TTCGAA | 1 cut(s) | 250 |
| Bsp1286I | GDGCHC | 2 cut(s) | 244, 819 |
| Bsp143I | GATC | 4 cut(s) | 230, 319, 472, 823 |
| BspACI | CCGC | 2 cut(s) | 839, 875 |
| BspANI | GGCC | 3 cut(s) | 47, 741, 838 |
| BspCNI | CTCAG | 1 cut(s) | 708 |
| BspDI | ATCGAT | 1 cut(s) | 598 |
| BspFNI | CGCG | 1 cut(s) | 238 |
| BspLI | GGNNCC | 1 cut(s) | 279 |
| BspMAI | CTGCAG | 1 cut(s) | 633 |
| BspT104I | TTCGAA | 1 cut(s) | 250 |
| BsrDI | GCAATG | 3 cut(s) | 317, 612, 682 |
| BsrI | ACTGG | 2 cut(s) | 75, 742 |
| BssECI | CCNNGG | 1 cut(s) | 292 |
| BssMI | GATC | 4 cut(s) | 230, 319, 472, 823 |
| BssSI | CACGAG | 1 cut(s) | 651 |
| Bst2BI | CACGAG | 1 cut(s) | 651 |
| Bst2UI | CCWGG | 2 cut(s) | 294, 465 |
| Bst4CI | ACNGT | 3 cut(s) | 154, 539, 615 |
| Bst6I | CTCTTC | 1 cut(s) | 372 |
| BstBI | TTCGAA | 1 cut(s) | 250 |
| BstC8I | GCNNGC | 2 cut(s) | 240, 743 |
| BstDEI | CTNAG | 2 cut(s) | 695, 770 |
| BstF5I | GGATG | 2 cut(s) | 431, 783 |
| BstFNI | CGCG | 1 cut(s) | 238 |
| BstH2I | RGCGCY | 1 cut(s) | 787 |
| BstHHI | GCGC | 1 cut(s) | 786 |
| BstKTI | GATC | 4 cut(s) | 233, 322, 475, 826 |
| BstMAI | GTCTC | 2 cut(s) | 13, 639 |
| BstMBI | GATC | 4 cut(s) | 230, 319, 472, 823 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 647, 800 |
| BstNI | CCWGG | 2 cut(s) | 294, 465 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 771 |
| BstSCI | CCNGG | 3 cut(s) | 292, 339, 463 |
| BstSFI | CTRYAG | 2 cut(s) | 163, 629 |
| BstSLI | GKGCMC | 1 cut(s) | 244 |
| BstUI | CGCG | 1 cut(s) | 238 |
| BstV1I | GCAGC | 3 cut(s) | 575, 590, 634 |
| BstX2I | RGATCY | 1 cut(s) | 472 |
| BstYI | RGATCY | 1 cut(s) | 472 |
| Bsu15I | ATCGAT | 1 cut(s) | 598 |
| BsuRI | GGCC | 3 cut(s) | 47, 741, 838 |
| BsuTUI | ATCGAT | 1 cut(s) | 598 |
| BtgZI | GCGATG | 1 cut(s) | 219 |
| BtsCI | GGATG | 2 cut(s) | 431, 783 |
| BtsI | GCAGTG | 1 cut(s) | 626 |
| BtsIMutI | CAGTG | 3 cut(s) | 535, 611, 626 |
| Cac8I | GCNNGC | 2 cut(s) | 240, 743 |
| CfoI | GCGC | 1 cut(s) | 786 |
| Cfr13I | GGNCC | 2 cut(s) | 46, 461 |
| ClaI | ATCGAT | 1 cut(s) | 598 |
| Csp6I | GTAC | 3 cut(s) | 28, 123, 412 |
| CviAII | CATG | 1 cut(s) | 487 |
| CviQI | GTAC | 3 cut(s) | 28, 123, 412 |
| DdeI | CTNAG | 2 cut(s) | 695, 770 |
| DpnI | GATC | 4 cut(s) | 232, 321, 474, 825 |
| DpnII | GATC | 4 cut(s) | 230, 319, 472, 823 |
| DraIII | CACNNNGTG | 1 cut(s) | 541 |
| EaeI | YGGCCR | 1 cut(s) | 739 |
| Eam1104I | CTCTTC | 1 cut(s) | 372 |
| EarI | CTCTTC | 1 cut(s) | 372 |
| Eco24I | GRGCYC | 1 cut(s) | 819 |
| Eco47I | GGWCC | 1 cut(s) | 461 |
| Eco47III | AGCGCT | 1 cut(s) | 785 |
| Eco57I | CTGAAG | 1 cut(s) | 26 |
| EcoRII | CCWGG | 2 cut(s) | 292, 463 |
| EcoT38I | GRGCYC | 1 cut(s) | 819 |
| FaeI | CATG | 1 cut(s) | 490 |
| FaqI | GGGAC | 1 cut(s) | 280 |
| FatI | CATG | 1 cut(s) | 486 |
| FauI | CCCGC | 1 cut(s) | 868 |
| Fnu4HI | GCNGC | 4 cut(s) | 564, 579, 648, 839 |
| FokI | GGATG | 2 cut(s) | 418, 790 |
| FriOI | GRGCYC | 1 cut(s) | 819 |
| Fsp4HI | GCNGC | 4 cut(s) | 564, 579, 648, 839 |
| FspBI | CTAG | 2 cut(s) | 54, 864 |
| GlaI | GCGC | 1 cut(s) | 785 |
| GluI | GCNGC | 4 cut(s) | 564, 579, 648, 839 |
| GsaI | CCCAGC | 2 cut(s) | 195, 645 |
| GsuI | CTGGAG | 1 cut(s) | 603 |
| HaeII | RGCGCY | 1 cut(s) | 787 |
| HaeIII | GGCC | 3 cut(s) | 47, 741, 838 |
| HapII | CCGG | 1 cut(s) | 340 |
| HhaI | GCGC | 1 cut(s) | 786 |
| Hin1II | CATG | 1 cut(s) | 490 |
| Hin6I | GCGC | 1 cut(s) | 784 |
| HinP1I | GCGC | 1 cut(s) | 784 |
| HindIII | AAGCTT | 1 cut(s) | 511 |
| HinfI | GANTC | 6 cut(s) | 57, 113, 428, 520, 699, 857 |
| HpaII | CCGG | 1 cut(s) | 340 |
| HphI | GGTGA | 3 cut(s) | 56, 308, 852 |
| Hpy166II | GTNNAC | 2 cut(s) | 30, 242 |
| Hpy188I | TCNGA | 4 cut(s) | 483, 698, 704, 777 |
| Hpy188III | TCNNGA | 3 cut(s) | 214, 618, 806 |
| Hpy8I | GTNNAC | 2 cut(s) | 30, 242 |
| Hpy99I | CGWCG | 1 cut(s) | 28 |
| HpyAV | CCTTC | 2 cut(s) | 50, 194 |
| HpyCH4III | ACNGT | 3 cut(s) | 154, 539, 615 |
| HpyCH4IV | ACGT | 2 cut(s) | 26, 346 |
| HpyCH4V | TGCA | 8 cut(s) | 206, 242, 508, 578, 605, 626, 631, 794 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 647, 800 |
| HpyF3I | CTNAG | 2 cut(s) | 695, 770 |
| HpySE526I | ACGT | 2 cut(s) | 26, 346 |
| Hsp92II | CATG | 1 cut(s) | 490 |
| HspAI | GCGC | 1 cut(s) | 784 |
| Kzo9I | GATC | 4 cut(s) | 230, 319, 472, 823 |
| LmnI | GCTCC | 1 cut(s) | 131 |
| Lsp1109I | GCAGC | 3 cut(s) | 575, 590, 634 |
| LweI | GCATC | 2 cut(s) | 246, 862 |
| MaeI | CTAG | 2 cut(s) | 54, 864 |
| MaeII | ACGT | 2 cut(s) | 26, 346 |
| MalI | GATC | 4 cut(s) | 232, 321, 474, 825 |
| MboI | GATC | 4 cut(s) | 230, 319, 472, 823 |
| MboII | GAAGA | 3 cut(s) | 346, 389, 563 |
| MfeI | CAATTG | 2 cut(s) | 423, 747 |
| MflI | RGATCY | 1 cut(s) | 472 |
| MhlI | GDGCHC | 2 cut(s) | 244, 819 |
| MlsI | TGGCCA | 1 cut(s) | 741 |
| MluCI | AATT | 6 cut(s) | 393, 423, 556, 621, 722, 747 |
| MluNI | TGGCCA | 1 cut(s) | 741 |
| MlyI | GAGTC | 3 cut(s) | 51, 529, 851 |
| MmeI | TCCRAC | 1 cut(s) | 755 |
| MnlI | CCTC | 6 cut(s) | 78, 81, 292, 296, 673, 852 |
| Mox20I | TGGCCA | 1 cut(s) | 741 |
| MscI | TGGCCA | 1 cut(s) | 741 |
| MseI | TTAA | 6 cut(s) | 104, 515, 717, 759, 789, 849 |
| Msp20I | TGGCCA | 1 cut(s) | 741 |
| MspA1I | CMGCKG | 1 cut(s) | 581 |
| MspI | CCGG | 1 cut(s) | 340 |
| MspR9I | CCNGG | 3 cut(s) | 294, 341, 465 |
| MunI | CAATTG | 2 cut(s) | 423, 747 |
| Mva1269I | GAATGC | 1 cut(s) | 334 |
| MvaI | CCWGG | 2 cut(s) | 294, 465 |
| MvnI | CGCG | 1 cut(s) | 238 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 647, 800 |
| NciI | CCSGG | 1 cut(s) | 341 |
| NdeII | GATC | 4 cut(s) | 230, 319, 472, 823 |
| NlaIII | CATG | 1 cut(s) | 490 |
| NlaIV | GGNNCC | 1 cut(s) | 279 |
| NspV | TTCGAA | 1 cut(s) | 250 |
| PctI | GAATGC | 1 cut(s) | 334 |
| PfeI | GAWTC | 3 cut(s) | 113, 428, 699 |
| PkrI | GCNGC | 4 cut(s) | 565, 580, 649, 840 |
| PleI | GAGTC | 3 cut(s) | 51, 528, 851 |
| PpsI | GAGTC | 3 cut(s) | 51, 528, 851 |
| PshAI | GACNNNNGTC | 1 cut(s) | 771 |
| Psp6I | CCWGG | 2 cut(s) | 292, 463 |
| PspFI | CCCAGC | 2 cut(s) | 191, 641 |
| PspGI | CCWGG | 2 cut(s) | 292, 463 |
| PspN4I | GGNNCC | 1 cut(s) | 279 |
| PspPI | GGNCC | 2 cut(s) | 46, 461 |
| PstI | CTGCAG | 1 cut(s) | 633 |
| PsuI | RGATCY | 1 cut(s) | 472 |
| PvuII | CAGCTG | 1 cut(s) | 581 |
| RsaI | GTAC | 3 cut(s) | 29, 124, 413 |
| RsaNI | GTAC | 3 cut(s) | 28, 123, 412 |
| SaqAI | TTAA | 6 cut(s) | 104, 515, 717, 759, 789, 849 |
| SatI | GCNGC | 4 cut(s) | 564, 579, 648, 839 |
| Sau3AI | GATC | 4 cut(s) | 230, 319, 472, 823 |
| Sau96I | GGNCC | 2 cut(s) | 46, 461 |
| SchI | GAGTC | 3 cut(s) | 51, 529, 851 |
| ScrFI | CCNGG | 3 cut(s) | 294, 341, 465 |
| SduI | GDGCHC | 2 cut(s) | 244, 819 |
| SfaNI | GCATC | 2 cut(s) | 246, 862 |
| SfcI | CTRYAG | 2 cut(s) | 163, 629 |
| SfuI | TTCGAA | 1 cut(s) | 250 |
| SinI | GGWCC | 1 cut(s) | 461 |
| SmlI | CTYRAG | 1 cut(s) | 806 |
| SmoI | CTYRAG | 1 cut(s) | 806 |
| Sse9I | AATT | 6 cut(s) | 393, 423, 556, 621, 722, 747 |
| SsiI | CCGC | 2 cut(s) | 839, 875 |
| SspMI | CTAG | 2 cut(s) | 54, 864 |
| StyD4I | CCNGG | 3 cut(s) | 292, 339, 463 |
| TaaI | ACNGT | 3 cut(s) | 154, 539, 615 |
| TaiI | ACGT | 2 cut(s) | 29, 349 |
| TaqI | TCGA | 4 cut(s) | 250, 286, 598, 617 |
| TasI | AATT | 6 cut(s) | 393, 423, 556, 621, 722, 747 |
| TauI | GCSGC | 1 cut(s) | 841 |
| TfiI | GAWTC | 3 cut(s) | 113, 428, 699 |
| Tru1I | TTAA | 6 cut(s) | 104, 515, 717, 759, 789, 849 |
| Tru9I | TTAA | 6 cut(s) | 104, 515, 717, 759, 789, 849 |
| TscAI | CASTG | 3 cut(s) | 542, 618, 633 |
| TseI | GCWGC | 3 cut(s) | 563, 578, 647 |
| TspDTI | ATGAA | 5 cut(s) | 346, 390, 420, 735, 794 |
| TspRI | CASTG | 3 cut(s) | 542, 618, 633 |
| VneI | GTGCAC | 1 cut(s) | 240 |
| VpaK11BI | GGWCC | 1 cut(s) | 461 |
| XapI | RAATTY | 1 cut(s) | 393 |
| XspI | CTAG | 2 cut(s) | 54, 864 |