Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

11390126 .. 11390716

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0069900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCACATTGTTCAAAAAATATTAGCTATACAACTTAGCCCTAGAGCTCATGGAGATAGATGGATTTGGAGTGGTGATAAAAAAGGGAGGTTTACTGTTAAATCCGCCTACCATATTGCGAGAGGTAGAATATTGGGGGAGATTACTACTGACCACAATCCTAGTTCCAAGCTCTGGAATCAAATTTGGAAAGCTCCTATACCTAGGAAGGTAAAAATTTGTGTGTGGAAGGCTGCTTCAAATATCCTACCTACACGGAGTCGGCTTAGCGAGCGTGGTATTGATCTTGATACCCAATGCCCATTCTGTGATGAGGAAGTTGAATCTCCTCTACATGCATTACGGGCCAAGTCTTTTTTGCAACTGGCGAATCTCCCTAGCTTAGCATCCATATCAACTGTTGCTGACTGGTTAGAGACTTCTTACTCTCAGTCTCCTACTACCTTTGCTTCTTTACTGATGTTGATTTGGGCTACTTGGCGCAACCGCAATGACAAAGTATGGAGCCATGCTCCTAGATTGGCTTCGGAGGTTGTTCCCATGACCTTAGGTTGGTGGGAAGAATACAAAGCTGCAAAATTTTCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

196

Amino Acids

22.37

Weight (kDa)

9.71

Isoelectric Point (pI)

54.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	31 - 114	1e-15	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	174
AciI	CCGC	2 cut(s)	105, 487
AcsI	RAATTY	3 cut(s)	183, 216, 578
AfiI	CCNNNNNNNGG	2 cut(s)	174, 552
AgsI	TTSAA	3 cut(s)	14, 240, 323
AluBI	AGCT	6 cut(s)	26, 47, 172, 194, 381, 572
AluI	AGCT	6 cut(s)	26, 47, 172, 194, 381, 572
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	410, 438
AoxI	GGCC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	233, 572
ApoI	RAATTY	3 cut(s)	183, 216, 578
AspA2I	CCTAGG	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	483
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	86, 576
AvrII	CCTAGG	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	220, 559
BccI	CCATC	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	410, 438
BfaI	CTAG	6 cut(s)	42, 162, 204, 378, 516, 589
BisI	GCNGC	2 cut(s)	234, 573
BlnI	CCTAGG	1 cut(s)	203
BlpI	GCTNAGC	2 cut(s)	266, 382
BlsI	GCNGC	2 cut(s)	235, 574
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	506
BmsI	GCATC	1 cut(s)	395
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
Bpu1102I	GCTNAGC	2 cut(s)	266, 382
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 552
Bse1I	ACTGG	2 cut(s)	369, 413
Bse21I	CCTNAGG	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	386
BseLI	CCNNNNNNNGG	2 cut(s)	174, 552
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	443
BseNI	ACTGG	2 cut(s)	369, 413
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	2 cut(s)	220, 559
BshFI	GGCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	174, 552
BsmAI	GTCTC	2 cut(s)	410, 438
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	283
Bsp1720I	GCTNAGC	2 cut(s)	266, 382
BspACI	CCGC	2 cut(s)	105, 487
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	369, 413
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	97, 400
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	5 cut(s)	35, 266, 382, 429, 547
BstF5I	GGATG	1 cut(s)	386
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	2 cut(s)	410, 438
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	271, 344
BstNSI	RCATGY	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	220, 559
Bsu36I	CCTNAGG	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	272
CfoI	GCGC	1 cut(s)	483
Cfr13I	GGNCC	1 cut(s)	345
CviAII	CATG	4 cut(s)	50, 335, 509, 541
DdeI	CTNAG	5 cut(s)	35, 266, 382, 429, 547
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	547
EcoICRI	GAGCTC	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	203
FaeI	CATG	4 cut(s)	53, 338, 512, 544
FaiI	YATR	9 cut(s)	29, 51, 114, 200, 336, 392, 502, 510, 542
FatI	CATG	4 cut(s)	49, 334, 508, 540
Fnu4HI	GCNGC	2 cut(s)	234, 573
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	2 cut(s)	234, 573
FspBI	CTAG	6 cut(s)	42, 162, 204, 378, 516, 589
GlaI	GCGC	1 cut(s)	482
GluI	GCNGC	2 cut(s)	234, 573
HaeIII	GGCC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	53, 338, 512, 544
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HinfI	GANTC	4 cut(s)	178, 259, 323, 370
HphI	GGTGA	2 cut(s)	86, 576
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	2 cut(s)	175, 287
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	202, 223
HpyCH4III	ACNGT	2 cut(s)	97, 400
HpyCH4V	TGCA	4 cut(s)	4, 338, 361, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	271, 344
HpyF3I	CTNAG	5 cut(s)	35, 266, 382, 429, 547
Hsp92II	CATG	4 cut(s)	53, 338, 512, 544
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	3 cut(s)	199, 504, 517
LpnPI	CCDG	3 cut(s)	160, 350, 394
Lsp1109I	GCAGC	2 cut(s)	220, 559
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	6 cut(s)	42, 162, 204, 378, 516, 589
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	1 cut(s)	572
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	3 cut(s)	183, 216, 578
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	81, 116, 307, 339, 523
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	1 cut(s)	99
MwoI	GCNNNNNNNGC	2 cut(s)	271, 344
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	4 cut(s)	53, 338, 512, 544
NlaIV	GGNNCC	1 cut(s)	506
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	178, 323, 370
PflMI	CCANNNNNTGG	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	235, 574
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	506
PspPI	GGNCC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	2 cut(s)	234, 573
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	345
SchI	GAGTC	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	395
Sse9I	AATT	3 cut(s)	183, 216, 578
SsiI	CCGC	2 cut(s)	105, 487
SspI	AATATT	2 cut(s)	21, 132
SspMI	CTAG	6 cut(s)	42, 162, 204, 378, 516, 589
SstI	GAGCTC	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	203
TaaI	ACNGT	2 cut(s)	97, 400
TasI	AATT	3 cut(s)	183, 216, 578
TfiI	GAWTC	3 cut(s)	178, 323, 370
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TseI	GCWGC	2 cut(s)	233, 572
TspGWI	ACGGA	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	174
XapI	RAATTY	3 cut(s)	183, 216, 578
XceI	RCATGY	1 cut(s)	338
XmaJI	CCTAGG	1 cut(s)	203
XspI	CTAG	6 cut(s)	42, 162, 204, 378, 516, 589
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.