Rorug04G0114400

Fanconi-associated nuclease 1 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
17971288 .. 17973422
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0114400.1

Sequence Viewer

Length: 531 bp
ATGCCACACTCCCACTCCCACAGCGAAAGCGACACCGTTCCCCTCCACCCTTCCTCCCAATCCGACATCAACGAGATCAAAAACCAAATCAATGCCAGCGTCCAATCGAGCCCCACCACCGTCCTCCCCGCCAAGCCTCCCAGCCCCACCGCGCCTCCATCCCCGTCTCCTCCTCCCCCTTCATCCAATCTAACCTCCCCAACCGGCCCCTCCCTCCTCTTCCAAGCCCAAGCAGCCGCCGTCTGTCCCCTCCCCTCCTCGCGTCCCCTCCGCTGCCAACAACAACGGCCCCATCAACATCGCCGCTTCTGGGTTCGGGTCCCCGCCCAACACCCTAACGGAGCCCGTTTGGGATACTGTCAAGAGGGACTTGTGTCGGATCATCATCAATTTGAAGCTCGTCGTCTTCCCAACCCCTACTGTGAGGACCCCGAAAAGGCTCTCAGGGATTGGGGTCTCTGCGGTCCTTTCTTCTTCATTGTGTTCTTGGGTCCCACTCTGTCCTGGTCTGCATCTGTCAAGAAGAGATGA

Protein Analysis

176

Amino Acids

19.36

Weight (kDa)

9.19

Isoelectric Point (pI)

73.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 152, 262
AciI CCGC 7 cut(s) 129, 150, 237, 271, 304, 324, 462
AclWI GGATC 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 310, 436
AgsI TTSAA 1 cut(s) 395
AjnI CCWGG 1 cut(s) 503
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 171, 461
AlwI GGATC 1 cut(s) 387
AoxI GGCC 2 cut(s) 205, 287
ApeKI GCWGC 2 cut(s) 233, 273
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 6 cut(s) 206, 288, 319, 427, 464, 491
AvaII GGWCC 4 cut(s) 319, 427, 464, 491
BanII GRGCYC 2 cut(s) 113, 346
BbsI GAAGAC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 245, 260
BccI CCATC 2 cut(s) 166, 300
BceAI ACGGC 2 cut(s) 224, 302
BciT130I CCWGG 1 cut(s) 505
BciVI GTATCC 1 cut(s) 347
BcoDI GTCTC 2 cut(s) 171, 461
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 4 cut(s) 234, 237, 274, 304
BlsI GCNGC 4 cut(s) 235, 238, 275, 305
Bme1390I CCNGG 1 cut(s) 505
Bme18I GGWCC 4 cut(s) 319, 427, 464, 491
BmgT120I GGNCC 6 cut(s) 206, 288, 319, 427, 464, 491
BmiI GGNNCC 8 cut(s) 208, 290, 320, 321, 343, 429, 492, 493
BmrFI CCNGG 1 cut(s) 505
BmsI GCATC 1 cut(s) 521
BoxI GACNNNNGTC 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 384
BsaI GGTCTC 1 cut(s) 461
BsaXI ACNNNNNCTCC 5 cut(s) 29, 38, 68, 139, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 436
Bse118I RCCGGY 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 1 cut(s) 505
BseGI GGATG 2 cut(s) 158, 182
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 310, 436
BseMII CTCAG 1 cut(s) 457
BseRI GAGGAG 4 cut(s) 159, 162, 206, 247
BseXI GCAGC 2 cut(s) 245, 260
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 2 cut(s) 152, 262
BshFI GGCC 2 cut(s) 207, 289
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 5 cut(s) 231, 249, 305, 381, 477
BslI CCNNNNNNNGG 2 cut(s) 310, 436
BsmAI GTCTC 2 cut(s) 171, 461
BsmBI CGTCTC 1 cut(s) 171
BsmFI GGGAC 5 cut(s) 231, 249, 305, 381, 477
BsnI GGCC 2 cut(s) 207, 289
Bso31I GGTCTC 1 cut(s) 461
Bsp1286I GDGCHC 2 cut(s) 113, 346
Bsp143I GATC 2 cut(s) 75, 379
BspACI CCGC 7 cut(s) 129, 150, 237, 271, 304, 324, 462
BspANI GGCC 2 cut(s) 207, 289
BspCNI CTCAG 1 cut(s) 456
BspFNI CGCG 2 cut(s) 152, 262
BspLI GGNNCC 8 cut(s) 208, 290, 320, 321, 343, 429, 492, 493
BspPI GGATC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 461
BsrFI RCCGGY 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 2 cut(s) 75, 379
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 4 cut(s) 37, 121, 359, 422
Bst6I CTCTTC 2 cut(s) 224, 518
BstC8I GCNNGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 443
BstF5I GGATG 2 cut(s) 158, 182
BstFNI CGCG 2 cut(s) 152, 262
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 78, 382
BstMAI GTCTC 2 cut(s) 171, 461
BstMBI GATC 2 cut(s) 75, 379
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 505
BstPAI GACNNNNGTC 1 cut(s) 373
BstSCI CCNGG 1 cut(s) 503
BstUI CGCG 2 cut(s) 152, 262
BstV1I GCAGC 2 cut(s) 245, 260
BstV2I GAAGAC 1 cut(s) 398
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 207, 289
BtgZI GCGATG 1 cut(s) 284
BtsCI GGATG 2 cut(s) 158, 182
Cac8I GCNNGC 1 cut(s) 97
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 6 cut(s) 206, 288, 319, 427, 464, 491
CseI GACGC 2 cut(s) 88, 251
DdeI CTNAG 1 cut(s) 443
DpnI GATC 2 cut(s) 77, 381
DpnII GATC 2 cut(s) 75, 379
Eam1104I CTCTTC 2 cut(s) 224, 518
EarI CTCTTC 2 cut(s) 224, 518
Eco24I GRGCYC 2 cut(s) 113, 346
Eco31I GGTCTC 1 cut(s) 461
Eco47I GGWCC 4 cut(s) 319, 427, 464, 491
EcoO109I RGGNCCY 3 cut(s) 319, 427, 491
EcoRII CCWGG 1 cut(s) 503
EcoT38I GRGCYC 2 cut(s) 113, 346
Esp3I CGTCTC 1 cut(s) 171
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 5 cut(s) 231, 249, 305, 381, 477
FauI CCCGC 2 cut(s) 136, 331
Fnu4HI GCNGC 4 cut(s) 234, 237, 274, 304
FokI GGATG 2 cut(s) 145, 169
FriOI GRGCYC 2 cut(s) 113, 346
Fsp4HI GCNGC 4 cut(s) 234, 237, 274, 304
GlaI GCGC 1 cut(s) 153
GluI GCNGC 4 cut(s) 234, 237, 274, 304
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 207, 289
HapII CCGG 1 cut(s) 204
HgaI GACGC 2 cut(s) 88, 251
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HpaII CCGG 1 cut(s) 204
Hpy188I TCNGA 2 cut(s) 64, 379
Hpy188III TCNNGA 2 cut(s) 362, 520
Hpy99I CGWCG 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 60, 189
HpyCH4III ACNGT 4 cut(s) 37, 121, 359, 422
HpyCH4V TGCA 1 cut(s) 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 443
HspAI GCGC 1 cut(s) 152
KflI GGGWCCC 2 cut(s) 319, 491
Kzo9I GATC 2 cut(s) 75, 379
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 7 cut(s) 109, 154, 217, 295, 430, 490, 517
Lsp1109I GCAGC 2 cut(s) 245, 260
LweI GCATC 1 cut(s) 521
MalI GATC 2 cut(s) 77, 381
MboI GATC 2 cut(s) 75, 379
MboII GAAGA 4 cut(s) 211, 398, 463, 466
MhlI GDGCHC 2 cut(s) 113, 346
MluCI AATT 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 87, 357
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 505
MvaI CCWGG 1 cut(s) 505
MvnI CGCG 2 cut(s) 152, 262
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 75, 379
NlaIV GGNNCC 8 cut(s) 208, 290, 320, 321, 343, 429, 492, 493
PkrI GCNGC 4 cut(s) 235, 238, 275, 305
PpuMI RGGWCCY 3 cut(s) 319, 427, 491
PshAI GACNNNNGTC 1 cut(s) 373
Psp5II RGGWCCY 3 cut(s) 319, 427, 491
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 8 cut(s) 208, 290, 320, 321, 343, 429, 492, 493
PspPI GGNCC 6 cut(s) 206, 288, 319, 427, 464, 491
PspPPI RGGWCCY 3 cut(s) 319, 427, 491
SatI GCNGC 4 cut(s) 234, 237, 274, 304
Sau3AI GATC 2 cut(s) 75, 379
Sau96I GGNCC 6 cut(s) 206, 288, 319, 427, 464, 491
ScrFI CCNGG 1 cut(s) 505
SduI GDGCHC 2 cut(s) 113, 346
SetI ASST 2 cut(s) 197, 400
SfaNI GCATC 1 cut(s) 521
SinI GGWCC 4 cut(s) 319, 427, 464, 491
Sse9I AATT 1 cut(s) 389
SsiI CCGC 7 cut(s) 129, 150, 237, 271, 304, 324, 462
StyD4I CCNGG 1 cut(s) 503
TaaI ACNGT 4 cut(s) 37, 121, 359, 422
TaqI TCGA 1 cut(s) 107
TasI AATT 1 cut(s) 389
TauI GCSGC 2 cut(s) 239, 306
TseI GCWGC 2 cut(s) 233, 273
TspDTI ATGAA 2 cut(s) 171, 466
TspGWI ACGGA 1 cut(s) 354
VpaK11BI GGWCC 4 cut(s) 319, 427, 464, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.