Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 25 - 69 | 3.2e-06 | PPR repeat family |
| PPR_2 | PF13041 | 123 - 169 | 2.9e-09 | PPR repeat family |
| PPR_2 | PF13041 | 221 - 263 | 6.8e-11 | PPR repeat family |
| PPR | PF01535 | 224 - 254 | 6.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 322 - 370 | 4.4e-07 | PPR repeat family |
| PPR_2 | PF13041 | 424 - 471 | 3.6e-09 | PPR repeat family |
| PPR_2 | PF13041 | 525 - 562 | 4.5e-06 | PPR repeat family |
| E_motif | PF20431 | 661 - 704 | 1.3e-06 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 793 |
| Acc16I | TGCGCA | 1 cut(s) | 1110 |
| AccI | GTMKAC | 3 cut(s) | 1491, 1506, 1731 |
| AccII | CGCG | 2 cut(s) | 409, 1242 |
| AccIII | TCCGGA | 2 cut(s) | 169, 1873 |
| AciI | CCGC | 6 cut(s) | 362, 454, 804, 1524, 1972, 2224 |
| AclI | AACGTT | 1 cut(s) | 372 |
| AclWI | GGATC | 4 cut(s) | 1239, 1438, 1451, 1581 |
| AcoI | YGGCCR | 2 cut(s) | 801, 984 |
| AcsI | RAATTY | 4 cut(s) | 317, 586, 1962, 2190 |
| AcuI | CTGAAG | 2 cut(s) | 1349, 1785 |
| AdeI | CACNNNGTG | 1 cut(s) | 707 |
| AfaI | GTAC | 3 cut(s) | 908, 1338, 1514 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1353, 1576, 2230 |
| AflIII | ACRYGT | 1 cut(s) | 1509 |
| AjnI | CCWGG | 1 cut(s) | 2092 |
| Alw21I | GWGCWC | 3 cut(s) | 1096, 1225, 1592 |
| Alw26I | GTCTC | 8 cut(s) | 104, 241, 657, 1165, 1396, 1622, 1969, 2076 |
| Alw44I | GTGCAC | 1 cut(s) | 1221 |
| AlwI | GGATC | 4 cut(s) | 1239, 1438, 1451, 1581 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1631 |
| Aor13HI | TCCGGA | 2 cut(s) | 169, 1873 |
| AoxI | GGCC | 2 cut(s) | 801, 984 |
| ApaLI | GTGCAC | 1 cut(s) | 1221 |
| ApeKI | GCWGC | 1 cut(s) | 1100 |
| ApoI | RAATTY | 4 cut(s) | 317, 586, 1962, 2190 |
| AspLEI | GCGC | 3 cut(s) | 1111, 1244, 2011 |
| AsuC2I | CCSGG | 1 cut(s) | 1571 |
| AsuHPI | GGTGA | 3 cut(s) | 110, 458, 2060 |
| AsuII | TTCGAA | 1 cut(s) | 1251 |
| BaeGI | GKGCMC | 1 cut(s) | 1225 |
| BamHI | GGATCC | 1 cut(s) | 1443 |
| BanII | GRGCYC | 2 cut(s) | 1030, 1426 |
| BauI | CACGAG | 2 cut(s) | 238, 1940 |
| Bbv12I | GWGCWC | 3 cut(s) | 1096, 1225, 1592 |
| BbvCI | CCTCAGC | 1 cut(s) | 39 |
| BbvI | GCAGC | 1 cut(s) | 1112 |
| BccI | CCATC | 4 cut(s) | 1437, 2028, 2033, 2228 |
| BceAI | ACGGC | 2 cut(s) | 776, 999 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 331, 365, 1888, 1922 |
| BciT130I | CCWGG | 1 cut(s) | 2094 |
| BciVI | GTATCC | 1 cut(s) | 166 |
| BclI | TGATCA | 1 cut(s) | 300 |
| BcnI | CCSGG | 1 cut(s) | 1571 |
| BcoDI | GTCTC | 8 cut(s) | 104, 241, 657, 1165, 1396, 1622, 1969, 2076 |
| BfaI | CTAG | 4 cut(s) | 633, 1074, 1089, 1115 |
| BfmI | CTRYAG | 4 cut(s) | 1017, 1290, 1658, 1881 |
| BfuI | GTATCC | 1 cut(s) | 166 |
| BisI | GCNGC | 4 cut(s) | 455, 804, 1101, 1525 |
| BlpI | GCTNAGC | 1 cut(s) | 491 |
| BlsI | GCNGC | 4 cut(s) | 456, 805, 1102, 1526 |
| Bme1390I | CCNGG | 2 cut(s) | 1571, 2094 |
| BmiI | GGNNCC | 5 cut(s) | 765, 1135, 1445, 1878, 2060 |
| BmrFI | CCNGG | 2 cut(s) | 1571, 2094 |
| BmrI | ACTGGG | 2 cut(s) | 468, 1428 |
| BmsI | GCATC | 6 cut(s) | 268, 389, 619, 1491, 1900, 1975 |
| BmuI | ACTGGG | 2 cut(s) | 468, 1428 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1345, 1377 |
| BpmI | CTGGAG | 1 cut(s) | 525 |
| Bpu10I | CCTNAGC | 1 cut(s) | 39 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 491 |
| Bpu14I | TTCGAA | 1 cut(s) | 1251 |
| BpuEI | CTTGAG | 1 cut(s) | 93 |
| BpuMI | CCSGG | 1 cut(s) | 1571 |
| BsaI | GGTCTC | 2 cut(s) | 1396, 1969 |
| BsaJI | CCNNGG | 3 cut(s) | 380, 1923, 2092 |
| BsaWI | WCCGGW | 2 cut(s) | 169, 1873 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1353, 1576, 2230 |
| Bse1I | ACTGG | 4 cut(s) | 474, 1423, 1669, 1753 |
| Bse3DI | GCAATG | 2 cut(s) | 285, 1936 |
| BseAI | TCCGGA | 2 cut(s) | 169, 1873 |
| BseBI | CCWGG | 1 cut(s) | 2094 |
| BseDI | CCNNGG | 3 cut(s) | 380, 1923, 2092 |
| BseGI | GGATG | 6 cut(s) | 283, 404, 973, 1990, 2044, 2239 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1353, 1576, 2230 |
| BseMI | GCAATG | 2 cut(s) | 285, 1936 |
| BseMII | CTCAG | 6 cut(s) | 53, 505, 1008, 1486, 1834, 2174 |
| BseNI | ACTGG | 4 cut(s) | 474, 1423, 1669, 1753 |
| BseRI | GAGGAG | 2 cut(s) | 133, 1808 |
| BseSI | GKGCMC | 1 cut(s) | 1225 |
| BseXI | GCAGC | 1 cut(s) | 1112 |
| BsgI | GTGCAG | 2 cut(s) | 548, 937 |
| Bsh1236I | CGCG | 2 cut(s) | 409, 1242 |
| BshFI | GGCC | 2 cut(s) | 803, 986 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1096, 1225, 1592 |
| BsiSI | CCGG | 4 cut(s) | 170, 414, 1570, 1874 |
| BslFI | GGGAC | 2 cut(s) | 650, 2134 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1353, 1576, 2230 |
| BsmAI | GTCTC | 8 cut(s) | 104, 241, 657, 1165, 1396, 1622, 1969, 2076 |
| BsmBI | CGTCTC | 1 cut(s) | 104 |
| BsmFI | GGGAC | 2 cut(s) | 650, 2134 |
| BsmI | GAATGC | 1 cut(s) | 1291 |
| BsnI | GGCC | 2 cut(s) | 803, 986 |
| Bso31I | GGTCTC | 2 cut(s) | 1396, 1969 |
| Bsp119I | TTCGAA | 1 cut(s) | 1251 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1030, 1096, 1225, 1426, 1592 |
| Bsp13I | TCCGGA | 2 cut(s) | 169, 1873 |
| Bsp143I | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 491 |
| BspACI | CCGC | 6 cut(s) | 362, 454, 804, 1524, 1972, 2224 |
| BspANI | GGCC | 2 cut(s) | 803, 986 |
| BspCNI | CTCAG | 6 cut(s) | 52, 504, 1007, 1485, 1833, 2173 |
| BspEI | TCCGGA | 2 cut(s) | 169, 1873 |
| BspFNI | CGCG | 2 cut(s) | 409, 1242 |
| BspLI | GGNNCC | 5 cut(s) | 765, 1135, 1445, 1878, 2060 |
| BspMAI | CTGCAG | 3 cut(s) | 1021, 1662, 1885 |
| BspPI | GGATC | 4 cut(s) | 1239, 1438, 1451, 1581 |
| BspT104I | TTCGAA | 1 cut(s) | 1251 |
| BspTNI | GGTCTC | 2 cut(s) | 1396, 1969 |
| BsrDI | GCAATG | 2 cut(s) | 285, 1936 |
| BsrI | ACTGG | 4 cut(s) | 474, 1423, 1669, 1753 |
| BssECI | CCNNGG | 3 cut(s) | 380, 1923, 2092 |
| BssMI | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| BssSI | CACGAG | 2 cut(s) | 238, 1940 |
| BssT1I | CCWWGG | 2 cut(s) | 380, 1923 |
| Bst2BI | CACGAG | 2 cut(s) | 238, 1940 |
| Bst2UI | CCWGG | 1 cut(s) | 2094 |
| Bst4CI | ACNGT | 3 cut(s) | 98, 1071, 1387 |
| Bst6I | CTCTTC | 5 cut(s) | 109, 298, 655, 1368, 1836 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 535, 1106, 1220, 1631 |
| BstBI | TTCGAA | 1 cut(s) | 1251 |
| BstC8I | GCNNGC | 7 cut(s) | 205, 340, 411, 497, 1543, 1804, 1881 |
| BstDEI | CTNAG | 6 cut(s) | 39, 491, 994, 1472, 1820, 2160 |
| BstF5I | GGATG | 6 cut(s) | 283, 404, 973, 1990, 2044, 2239 |
| BstFNI | CGCG | 2 cut(s) | 409, 1242 |
| BstHHI | GCGC | 3 cut(s) | 1111, 1244, 2011 |
| BstKTI | GATC | 8 cut(s) | 303, 931, 993, 1234, 1446, 1576, 1816, 2146 |
| BstMAI | GTCTC | 8 cut(s) | 104, 241, 657, 1165, 1396, 1622, 1969, 2076 |
| BstMBI | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| BstNI | CCWGG | 1 cut(s) | 2094 |
| BstNSI | RCATGY | 1 cut(s) | 1513 |
| BstSCI | CCNGG | 2 cut(s) | 1569, 2092 |
| BstSFI | CTRYAG | 4 cut(s) | 1017, 1290, 1658, 1881 |
| BstSLI | GKGCMC | 1 cut(s) | 1225 |
| BstUI | CGCG | 2 cut(s) | 409, 1242 |
| BstV1I | GCAGC | 1 cut(s) | 1112 |
| BstX2I | RGATCY | 2 cut(s) | 1443, 1573 |
| BstYI | RGATCY | 2 cut(s) | 1443, 1573 |
| BsuI | GTATCC | 1 cut(s) | 166 |
| BsuRI | GGCC | 2 cut(s) | 803, 986 |
| BtsCI | GGATG | 6 cut(s) | 283, 404, 973, 1990, 2044, 2239 |
| BtsI | GCAGTG | 1 cut(s) | 536 |
| BtsIMutI | CAGTG | 2 cut(s) | 536, 1416 |
| Cac8I | GCNNGC | 7 cut(s) | 205, 340, 411, 497, 1543, 1804, 1881 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1631 |
| CfoI | GCGC | 3 cut(s) | 1111, 1244, 2011 |
| Csp6I | GTAC | 3 cut(s) | 907, 1337, 1513 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1421, 1456 |
| CviQI | GTAC | 3 cut(s) | 907, 1337, 1513 |
| DdeI | CTNAG | 6 cut(s) | 39, 491, 994, 1472, 1820, 2160 |
| DpnI | GATC | 8 cut(s) | 302, 930, 992, 1233, 1445, 1575, 1815, 2145 |
| DpnII | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| DraIII | CACNNNGTG | 1 cut(s) | 707 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 793 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 793 |
| EaeI | YGGCCR | 2 cut(s) | 801, 984 |
| Eam1104I | CTCTTC | 5 cut(s) | 109, 298, 655, 1368, 1836 |
| EarI | CTCTTC | 5 cut(s) | 109, 298, 655, 1368, 1836 |
| EciI | GGCGGA | 2 cut(s) | 377, 1987 |
| Eco130I | CCWWGG | 2 cut(s) | 380, 1923 |
| Eco24I | GRGCYC | 2 cut(s) | 1030, 1426 |
| Eco31I | GGTCTC | 2 cut(s) | 1396, 1969 |
| Eco57I | CTGAAG | 2 cut(s) | 1349, 1785 |
| EcoRI | GAATTC | 1 cut(s) | 586 |
| EcoRII | CCWGG | 1 cut(s) | 2092 |
| EcoT14I | CCWWGG | 2 cut(s) | 380, 1923 |
| EcoT22I | ATGCAT | 3 cut(s) | 254, 963, 1484 |
| EcoT38I | GRGCYC | 2 cut(s) | 1030, 1426 |
| ErhI | CCWWGG | 2 cut(s) | 380, 1923 |
| Esp3I | CGTCTC | 1 cut(s) | 104 |
| FaqI | GGGAC | 2 cut(s) | 650, 2134 |
| FauNDI | CATATG | 2 cut(s) | 781, 1849 |
| FbaI | TGATCA | 1 cut(s) | 300 |
| FblI | GTMKAC | 3 cut(s) | 1491, 1506, 1731 |
| Fnu4HI | GCNGC | 4 cut(s) | 455, 804, 1101, 1525 |
| FokI | GGATG | 5 cut(s) | 290, 411, 980, 1997, 2051 |
| FriOI | GRGCYC | 2 cut(s) | 1030, 1426 |
| Fsp4HI | GCNGC | 4 cut(s) | 455, 804, 1101, 1525 |
| FspBI | CTAG | 4 cut(s) | 633, 1074, 1089, 1115 |
| FspI | TGCGCA | 1 cut(s) | 1110 |
| GlaI | GCGC | 3 cut(s) | 1110, 1243, 2010 |
| GluI | GCNGC | 4 cut(s) | 455, 804, 1101, 1525 |
| GsuI | CTGGAG | 1 cut(s) | 525 |
| HaeIII | GGCC | 2 cut(s) | 803, 986 |
| HapII | CCGG | 4 cut(s) | 170, 414, 1570, 1874 |
| HhaI | GCGC | 3 cut(s) | 1111, 1244, 2011 |
| Hin6I | GCGC | 3 cut(s) | 1109, 1242, 2009 |
| HinP1I | GCGC | 3 cut(s) | 1109, 1242, 2009 |
| HincII | GTYRAC | 4 cut(s) | 262, 1383, 1507, 1732 |
| HindII | GTYRAC | 4 cut(s) | 262, 1383, 1507, 1732 |
| HindIII | AAGCTT | 2 cut(s) | 201, 1404 |
| HinfI | GANTC | 7 cut(s) | 566, 655, 875, 1013, 1055, 1376, 1668 |
| HpaI | GTTAAC | 2 cut(s) | 262, 1383 |
| HpaII | CCGG | 4 cut(s) | 170, 414, 1570, 1874 |
| HphI | GGTGA | 3 cut(s) | 110, 458, 2060 |
| Hpy166II | GTNNAC | 8 cut(s) | 262, 981, 1223, 1383, 1492, 1507, 1732, 1945 |
| Hpy188III | TCNNGA | 5 cut(s) | 170, 504, 1059, 1874, 1907 |
| Hpy8I | GTNNAC | 8 cut(s) | 262, 981, 1223, 1383, 1492, 1507, 1732, 1945 |
| HpyAV | CCTTC | 5 cut(s) | 31, 193, 749, 1406, 1827 |
| HpyCH4III | ACNGT | 3 cut(s) | 98, 1071, 1387 |
| HpyCH4IV | ACGT | 2 cut(s) | 372, 1225 |
| HpyF3I | CTNAG | 6 cut(s) | 39, 491, 994, 1472, 1820, 2160 |
| HpySE526I | ACGT | 2 cut(s) | 372, 1225 |
| HspAI | GCGC | 3 cut(s) | 1109, 1242, 2009 |
| Kpn2I | TCCGGA | 2 cut(s) | 169, 1873 |
| Ksp22I | TGATCA | 1 cut(s) | 300 |
| KspAI | GTTAAC | 2 cut(s) | 262, 1383 |
| Kzo9I | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| LmnI | GCTCC | 5 cut(s) | 23, 172, 506, 1587, 1876 |
| Lsp1109I | GCAGC | 1 cut(s) | 1112 |
| LweI | GCATC | 6 cut(s) | 268, 389, 619, 1491, 1900, 1975 |
| MaeI | CTAG | 4 cut(s) | 633, 1074, 1089, 1115 |
| MaeII | ACGT | 2 cut(s) | 372, 1225 |
| MaeIII | GTNAC | 3 cut(s) | 481, 1201, 2178 |
| MalI | GATC | 8 cut(s) | 302, 930, 992, 1233, 1445, 1575, 1815, 2145 |
| MboI | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| MboII | GAAGA | 9 cut(s) | 96, 264, 285, 638, 672, 1355, 1778, 1853, 2128 |
| MfeI | CAATTG | 1 cut(s) | 2003 |
| MflI | RGATCY | 2 cut(s) | 1443, 1573 |
| MhlI | GDGCHC | 5 cut(s) | 1030, 1096, 1225, 1426, 1592 |
| MlyI | GAGTC | 1 cut(s) | 575 |
| MmeI | TCCRAC | 3 cut(s) | 403, 1032, 2078 |
| Mph1103I | ATGCAT | 3 cut(s) | 254, 963, 1484 |
| MroI | TCCGGA | 2 cut(s) | 169, 1873 |
| MseI | TTAA | 5 cut(s) | 26, 261, 741, 822, 1382 |
| MslI | CAYNNNNRTG | 4 cut(s) | 543, 966, 1149, 2016 |
| MspI | CCGG | 4 cut(s) | 170, 414, 1570, 1874 |
| MspR9I | CCNGG | 2 cut(s) | 1571, 2094 |
| MunI | CAATTG | 1 cut(s) | 2003 |
| Mva1269I | GAATGC | 1 cut(s) | 1291 |
| MvaI | CCWGG | 1 cut(s) | 2094 |
| MvnI | CGCG | 2 cut(s) | 409, 1242 |
| NciI | CCSGG | 1 cut(s) | 1571 |
| NdeI | CATATG | 2 cut(s) | 781, 1849 |
| NdeII | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| NlaIV | GGNNCC | 5 cut(s) | 765, 1135, 1445, 1878, 2060 |
| NmuCI | GTSAC | 1 cut(s) | 2178 |
| NsbI | TGCGCA | 1 cut(s) | 1110 |
| NsiI | ATGCAT | 3 cut(s) | 254, 963, 1484 |
| NspI | RCATGY | 1 cut(s) | 1513 |
| NspV | TTCGAA | 1 cut(s) | 1251 |
| PciI | ACATGT | 1 cut(s) | 1509 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1231 |
| PctI | GAATGC | 1 cut(s) | 1291 |
| PfeI | GAWTC | 6 cut(s) | 655, 875, 1013, 1055, 1376, 1668 |
| PkrI | GCNGC | 4 cut(s) | 456, 805, 1102, 1526 |
| PleI | GAGTC | 1 cut(s) | 574 |
| PpsI | GAGTC | 1 cut(s) | 574 |
| PscI | ACATGT | 1 cut(s) | 1509 |
| Psp1406I | AACGTT | 1 cut(s) | 372 |
| Psp6I | CCWGG | 1 cut(s) | 2092 |
| PspGI | CCWGG | 1 cut(s) | 2092 |
| PspN4I | GGNNCC | 5 cut(s) | 765, 1135, 1445, 1878, 2060 |
| PstI | CTGCAG | 3 cut(s) | 1021, 1662, 1885 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1631 |
| PsuI | RGATCY | 2 cut(s) | 1443, 1573 |
| RsaI | GTAC | 3 cut(s) | 908, 1338, 1514 |
| RsaNI | GTAC | 3 cut(s) | 907, 1337, 1513 |
| RseI | CAYNNNNRTG | 4 cut(s) | 543, 966, 1149, 2016 |
| SalI | GTCGAC | 2 cut(s) | 1505, 1730 |
| SaqAI | TTAA | 5 cut(s) | 26, 261, 741, 822, 1382 |
| SatI | GCNGC | 4 cut(s) | 455, 804, 1101, 1525 |
| Sau3AI | GATC | 8 cut(s) | 300, 928, 990, 1231, 1443, 1573, 1813, 2143 |
| SchI | GAGTC | 1 cut(s) | 575 |
| ScrFI | CCNGG | 2 cut(s) | 1571, 2094 |
| SduI | GDGCHC | 5 cut(s) | 1030, 1096, 1225, 1426, 1592 |
| SfaNI | GCATC | 6 cut(s) | 268, 389, 619, 1491, 1900, 1975 |
| SfcI | CTRYAG | 4 cut(s) | 1017, 1290, 1658, 1881 |
| SfuI | TTCGAA | 1 cut(s) | 1251 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 543, 966, 1149, 2016 |
| SmlI | CTYRAG | 1 cut(s) | 108 |
| SmoI | CTYRAG | 1 cut(s) | 108 |
| SsiI | CCGC | 6 cut(s) | 362, 454, 804, 1524, 1972, 2224 |
| SspI | AATATT | 1 cut(s) | 925 |
| SspMI | CTAG | 4 cut(s) | 633, 1074, 1089, 1115 |
| StyD4I | CCNGG | 2 cut(s) | 1569, 2092 |
| StyI | CCWWGG | 2 cut(s) | 380, 1923 |
| TaaI | ACNGT | 3 cut(s) | 98, 1071, 1387 |
| TaiI | ACGT | 2 cut(s) | 375, 1228 |
| TatI | WGTACW | 2 cut(s) | 906, 1512 |
| TauI | GCSGC | 3 cut(s) | 457, 806, 1527 |
| TfiI | GAWTC | 6 cut(s) | 655, 875, 1013, 1055, 1376, 1668 |
| Tru1I | TTAA | 5 cut(s) | 26, 261, 741, 822, 1382 |
| Tru9I | TTAA | 5 cut(s) | 26, 261, 741, 822, 1382 |
| TscAI | CASTG | 2 cut(s) | 536, 1423 |
| TseFI | GTSAC | 1 cut(s) | 2178 |
| TseI | GCWGC | 1 cut(s) | 1100 |
| Tsp45I | GTSAC | 1 cut(s) | 2178 |
| TspDTI | ATGAA | 8 cut(s) | 17, 138, 285, 599, 1133, 1444, 2042, 2081 |
| TspRI | CASTG | 2 cut(s) | 536, 1423 |
| VneI | GTGCAC | 1 cut(s) | 1221 |
| XapI | RAATTY | 4 cut(s) | 317, 586, 1962, 2190 |
| XceI | RCATGY | 1 cut(s) | 1513 |
| XmiI | GTMKAC | 3 cut(s) | 1491, 1506, 1731 |
| XspI | CTAG | 4 cut(s) | 633, 1074, 1089, 1115 |
| Zsp2I | ATGCAT | 3 cut(s) | 254, 963, 1484 |