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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 882 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 143 |
| AccB1I | GGYRCC | 2 cut(s) | 610, 917 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 300 |
| AccI | GTMKAC | 5 cut(s) | 203, 507, 711, 948, 1223 |
| AccIII | TCCGGA | 3 cut(s) | 133, 306, 552 |
| AciI | CCGC | 4 cut(s) | 322, 717, 928, 1328 |
| AcoI | YGGCCR | 2 cut(s) | 830, 1329 |
| AcsI | RAATTY | 1 cut(s) | 1017 |
| AcuI | CTGAAG | 1 cut(s) | 413 |
| AcyI | GRCGYC | 2 cut(s) | 192, 611 |
| AfaI | GTAC | 5 cut(s) | 392, 1189, 1277, 1434, 1443 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 300, 542, 723, 839, 927 |
| AgsI | TTSAA | 8 cut(s) | 86, 334, 440, 496, 731, 781, 1115, 1135 |
| AjnI | CCWGG | 2 cut(s) | 931, 991 |
| AluBI | AGCT | 3 cut(s) | 184, 362, 1385 |
| AluI | AGCT | 3 cut(s) | 184, 362, 1385 |
| Alw26I | GTCTC | 1 cut(s) | 837 |
| Aor13HI | TCCGGA | 3 cut(s) | 133, 306, 552 |
| AoxI | GGCC | 3 cut(s) | 830, 929, 1329 |
| ApeKI | GCWGC | 1 cut(s) | 1036 |
| ApoI | RAATTY | 1 cut(s) | 1017 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 288, 320 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 185 |
| AspLEI | GCGC | 1 cut(s) | 613 |
| AspS9I | GGNCC | 1 cut(s) | 304 |
| AsuC2I | CCSGG | 1 cut(s) | 422 |
| AsuHPI | GGTGA | 3 cut(s) | 190, 406, 507 |
| AvaII | GGWCC | 1 cut(s) | 304 |
| BaeGI | GKGCMC | 1 cut(s) | 492 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 753, 786 |
| BalI | TGGCCA | 1 cut(s) | 832 |
| BanI | GGYRCC | 2 cut(s) | 610, 917 |
| BbvI | GCAGC | 1 cut(s) | 1048 |
| BccI | CCATC | 5 cut(s) | 544, 653, 683, 822, 1025 |
| BceAI | ACGGC | 2 cut(s) | 515, 1316 |
| BcgI | CGANNNNNNTGC | 3 cut(s) | 214, 248, 1441 |
| BciT130I | CCWGG | 2 cut(s) | 933, 993 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcnI | CCSGG | 1 cut(s) | 422 |
| BcoDI | GTCTC | 1 cut(s) | 837 |
| BfmI | CTRYAG | 2 cut(s) | 540, 1463 |
| BfoI | RGCGCY | 1 cut(s) | 614 |
| BglII | AGATCT | 1 cut(s) | 1150 |
| BisI | GCNGC | 3 cut(s) | 929, 1037, 1329 |
| BlsI | GCNGC | 3 cut(s) | 930, 1038, 1330 |
| BmcAI | AGTACT | 2 cut(s) | 1434, 1443 |
| Bme1390I | CCNGG | 3 cut(s) | 422, 933, 993 |
| Bme18I | GGWCC | 1 cut(s) | 304 |
| BmgT120I | GGNCC | 1 cut(s) | 304 |
| BmiI | GGNNCC | 6 cut(s) | 109, 305, 551, 612, 907, 919 |
| BmrFI | CCNGG | 3 cut(s) | 422, 933, 993 |
| BmrI | ACTGGG | 2 cut(s) | 112, 732 |
| BmsI | GCATC | 7 cut(s) | 117, 141, 445, 685, 739, 964, 1231 |
| BmuI | ACTGGG | 2 cut(s) | 112, 732 |
| BpuEI | CTTGAG | 2 cut(s) | 140, 287 |
| BpuMI | CCSGG | 1 cut(s) | 422 |
| BsaHI | GRCGYC | 2 cut(s) | 192, 611 |
| BsaJI | CCNNGG | 4 cut(s) | 111, 595, 765, 991 |
| BsaWI | WCCGGW | 3 cut(s) | 133, 306, 552 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 333, 363 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 300, 542, 723, 839, 927 |
| Bse1I | ACTGG | 6 cut(s) | 107, 589, 727, 1066, 1215, 1425 |
| Bse3DI | GCAATG | 1 cut(s) | 984 |
| BseAI | TCCGGA | 3 cut(s) | 133, 306, 552 |
| BseBI | CCWGG | 2 cut(s) | 933, 993 |
| BseDI | CCNNGG | 4 cut(s) | 111, 595, 765, 991 |
| BseGI | GGATG | 4 cut(s) | 700, 833, 979, 1303 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 300, 542, 723, 839, 927 |
| BseMI | GCAATG | 1 cut(s) | 984 |
| BseMII | CTCAG | 1 cut(s) | 1145 |
| BseNI | ACTGG | 6 cut(s) | 107, 589, 727, 1066, 1215, 1425 |
| BseRI | GAGGAG | 1 cut(s) | 354 |
| BseSI | GKGCMC | 1 cut(s) | 492 |
| BseX3I | CGGCCG | 1 cut(s) | 1329 |
| BseXI | GCAGC | 1 cut(s) | 1048 |
| BseYI | CCCAGC | 1 cut(s) | 458 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1332 |
| BshFI | GGCC | 3 cut(s) | 832, 931, 1331 |
| BshNI | GGYRCC | 2 cut(s) | 610, 917 |
| BsiEI | CGRYCG | 1 cut(s) | 1332 |
| BsiSI | CCGG | 4 cut(s) | 134, 307, 422, 553 |
| BslFI | GGGAC | 2 cut(s) | 518, 1372 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 300, 542, 723, 839, 927 |
| BsmAI | GTCTC | 1 cut(s) | 837 |
| BsmFI | GGGAC | 2 cut(s) | 518, 1372 |
| BsmI | GAATGC | 4 cut(s) | 168, 502, 856, 1258 |
| BsnI | GGCC | 3 cut(s) | 832, 931, 1331 |
| Bsp1286I | GDGCHC | 1 cut(s) | 492 |
| Bsp13I | TCCGGA | 3 cut(s) | 133, 306, 552 |
| Bsp143I | GATC | 3 cut(s) | 259, 1150, 1300 |
| Bsp19I | CCATGG | 1 cut(s) | 111 |
| BspACI | CCGC | 4 cut(s) | 322, 717, 928, 1328 |
| BspANI | GGCC | 3 cut(s) | 832, 931, 1331 |
| BspCNI | CTCAG | 1 cut(s) | 1146 |
| BspEI | TCCGGA | 3 cut(s) | 133, 306, 552 |
| BspLI | GGNNCC | 6 cut(s) | 109, 305, 551, 612, 907, 919 |
| BspMAI | CTGCAG | 1 cut(s) | 544 |
| BspQI | GCTCTTC | 1 cut(s) | 191 |
| BspT107I | GGYRCC | 2 cut(s) | 610, 917 |
| BsrDI | GCAATG | 1 cut(s) | 984 |
| BsrI | ACTGG | 6 cut(s) | 107, 589, 727, 1066, 1215, 1425 |
| BssECI | CCNNGG | 4 cut(s) | 111, 595, 765, 991 |
| BssMI | GATC | 3 cut(s) | 259, 1150, 1300 |
| BssNI | GRCGYC | 2 cut(s) | 192, 611 |
| BssT1I | CCWWGG | 3 cut(s) | 111, 595, 765 |
| Bst2UI | CCWGG | 2 cut(s) | 933, 993 |
| Bst4CI | ACNGT | 9 cut(s) | 34, 40, 46, 142, 201, 487, 622, 1432, 1458 |
| Bst6I | CTCTTC | 2 cut(s) | 191, 1451 |
| BstACI | GRCGYC | 2 cut(s) | 192, 611 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 127 |
| BstC8I | GCNNGC | 1 cut(s) | 223 |
| BstDEI | CTNAG | 3 cut(s) | 641, 1041, 1154 |
| BstDSI | CCRYGG | 1 cut(s) | 111 |
| BstF5I | GGATG | 4 cut(s) | 700, 833, 979, 1303 |
| BstH2I | RGCGCY | 1 cut(s) | 614 |
| BstHHI | GCGC | 1 cut(s) | 613 |
| BstKTI | GATC | 3 cut(s) | 262, 1153, 1303 |
| BstMAI | GTCTC | 1 cut(s) | 837 |
| BstMBI | GATC | 3 cut(s) | 259, 1150, 1300 |
| BstMCI | CGRYCG | 1 cut(s) | 1332 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 127, 866, 1262 |
| BstNI | CCWGG | 2 cut(s) | 933, 993 |
| BstSCI | CCNGG | 3 cut(s) | 420, 931, 991 |
| BstSFI | CTRYAG | 2 cut(s) | 540, 1463 |
| BstSLI | GKGCMC | 1 cut(s) | 492 |
| BstV1I | GCAGC | 1 cut(s) | 1048 |
| BstX2I | RGATCY | 1 cut(s) | 1150 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 596 |
| BstYI | RGATCY | 1 cut(s) | 1150 |
| BstZI | CGGCCG | 1 cut(s) | 1329 |
| BsuRI | GGCC | 3 cut(s) | 832, 931, 1331 |
| BtgI | CCRYGG | 1 cut(s) | 111 |
| BtsCI | GGATG | 4 cut(s) | 700, 833, 979, 1303 |
| BtsIMutI | CAGTG | 6 cut(s) | 39, 45, 51, 618, 720, 1208 |
| Cac8I | GCNNGC | 1 cut(s) | 223 |
| CfoI | GCGC | 1 cut(s) | 613 |
| Cfr13I | GGNCC | 1 cut(s) | 304 |
| CseI | GACGC | 2 cut(s) | 200, 995 |
| Csp6I | GTAC | 5 cut(s) | 391, 1188, 1276, 1433, 1442 |
| CviAII | CATG | 3 cut(s) | 112, 208, 241 |
| CviQI | GTAC | 5 cut(s) | 391, 1188, 1276, 1433, 1442 |
| DdeI | CTNAG | 3 cut(s) | 641, 1041, 1154 |
| DinI | GGCGCC | 1 cut(s) | 612 |
| DpnI | GATC | 3 cut(s) | 261, 1152, 1302 |
| DpnII | GATC | 3 cut(s) | 259, 1150, 1300 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 143 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 143 |
| EaeI | YGGCCR | 2 cut(s) | 830, 1329 |
| EagI | CGGCCG | 1 cut(s) | 1329 |
| Eam1104I | CTCTTC | 2 cut(s) | 191, 1451 |
| EarI | CTCTTC | 2 cut(s) | 191, 1451 |
| EclXI | CGGCCG | 1 cut(s) | 1329 |
| Eco130I | CCWWGG | 3 cut(s) | 111, 595, 765 |
| Eco32I | GATATC | 1 cut(s) | 562 |
| Eco47I | GGWCC | 1 cut(s) | 304 |
| Eco52I | CGGCCG | 1 cut(s) | 1329 |
| Eco57I | CTGAAG | 1 cut(s) | 413 |
| EcoRII | CCWGG | 2 cut(s) | 931, 991 |
| EcoRV | GATATC | 1 cut(s) | 562 |
| EcoT14I | CCWWGG | 3 cut(s) | 111, 595, 765 |
| EgeI | GGCGCC | 1 cut(s) | 612 |
| EheI | GGCGCC | 1 cut(s) | 612 |
| ErhI | CCWWGG | 3 cut(s) | 111, 595, 765 |
| FaeI | CATG | 3 cut(s) | 115, 211, 244 |
| FaqI | GGGAC | 2 cut(s) | 518, 1372 |
| FatI | CATG | 3 cut(s) | 111, 207, 240 |
| FauI | CCCGC | 1 cut(s) | 329 |
| FauNDI | CATATG | 1 cut(s) | 1261 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| FblI | GTMKAC | 5 cut(s) | 203, 507, 711, 948, 1223 |
| Fnu4HI | GCNGC | 3 cut(s) | 929, 1037, 1329 |
| FokI | GGATG | 4 cut(s) | 707, 840, 986, 1310 |
| Fsp4HI | GCNGC | 3 cut(s) | 929, 1037, 1329 |
| GlaI | GCGC | 1 cut(s) | 612 |
| GluI | GCNGC | 3 cut(s) | 929, 1037, 1329 |
| GsaI | CCCAGC | 1 cut(s) | 462 |
| HaeII | RGCGCY | 1 cut(s) | 614 |
| HaeIII | GGCC | 3 cut(s) | 832, 931, 1331 |
| HapII | CCGG | 4 cut(s) | 134, 307, 422, 553 |
| HgaI | GACGC | 2 cut(s) | 200, 995 |
| HhaI | GCGC | 1 cut(s) | 613 |
| Hin1I | GRCGYC | 2 cut(s) | 192, 611 |
| Hin1II | CATG | 3 cut(s) | 115, 211, 244 |
| Hin6I | GCGC | 1 cut(s) | 611 |
| HinP1I | GCGC | 1 cut(s) | 611 |
| HincII | GTYRAC | 5 cut(s) | 204, 346, 569, 712, 1054 |
| HindII | GTYRAC | 5 cut(s) | 204, 346, 569, 712, 1054 |
| HinfI | GANTC | 4 cut(s) | 470, 521, 727, 1291 |
| HpaI | GTTAAC | 1 cut(s) | 346 |
| HpaII | CCGG | 4 cut(s) | 134, 307, 422, 553 |
| HphI | GGTGA | 3 cut(s) | 190, 406, 507 |
| Hpy166II | GTNNAC | 9 cut(s) | 100, 204, 346, 508, 569, 712, 949, 1054, 1224 |
| Hpy188I | TCNGA | 6 cut(s) | 174, 432, 791, 1155, 1290, 1380 |
| Hpy188III | TCNNGA | 8 cut(s) | 134, 148, 307, 406, 553, 1112, 1295, 1450 |
| Hpy8I | GTNNAC | 9 cut(s) | 100, 204, 346, 508, 569, 712, 949, 1054, 1224 |
| Hpy99I | CGWCG | 1 cut(s) | 194 |
| HpyAV | CCTTC | 5 cut(s) | 80, 169, 427, 540, 691 |
| HpyCH4III | ACNGT | 9 cut(s) | 34, 40, 46, 142, 201, 487, 622, 1432, 1458 |
| HpyCH4IV | ACGT | 3 cut(s) | 315, 348, 1056 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 127, 866, 1262 |
| HpyF3I | CTNAG | 3 cut(s) | 641, 1041, 1154 |
| HpySE526I | ACGT | 3 cut(s) | 315, 348, 1056 |
| Hsp92I | GRCGYC | 2 cut(s) | 192, 611 |
| Hsp92II | CATG | 3 cut(s) | 115, 211, 244 |
| HspAI | GCGC | 1 cut(s) | 611 |
| KasI | GGCGCC | 1 cut(s) | 610 |
| Kpn2I | TCCGGA | 3 cut(s) | 133, 306, 552 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| KspAI | GTTAAC | 1 cut(s) | 346 |
| Kzo9I | GATC | 3 cut(s) | 259, 1150, 1300 |
| LguI | GCTCTTC | 1 cut(s) | 191 |
| LmnI | GCTCC | 1 cut(s) | 905 |
| Lsp1109I | GCAGC | 1 cut(s) | 1048 |
| LweI | GCATC | 7 cut(s) | 117, 141, 445, 685, 739, 964, 1231 |
| MaeII | ACGT | 3 cut(s) | 315, 348, 1056 |
| MaeIII | GTNAC | 6 cut(s) | 34, 40, 316, 412, 1057, 1333 |
| MalI | GATC | 3 cut(s) | 261, 1152, 1302 |
| MboI | GATC | 3 cut(s) | 259, 1150, 1300 |
| MboII | GAAGA | 4 cut(s) | 178, 765, 1380, 1438 |
| MflI | RGATCY | 1 cut(s) | 1150 |
| MhlI | GDGCHC | 1 cut(s) | 492 |
| MlsI | TGGCCA | 1 cut(s) | 832 |
| MluCI | AATT | 6 cut(s) | 328, 754, 1017, 1161, 1234, 1366 |
| MluNI | TGGCCA | 1 cut(s) | 832 |
| Mly113I | GGCGCC | 1 cut(s) | 611 |
| MlyI | GAGTC | 1 cut(s) | 530 |
| MmeI | TCCRAC | 1 cut(s) | 445 |
| Mox20I | TGGCCA | 1 cut(s) | 832 |
| MroI | TCCGGA | 3 cut(s) | 133, 306, 552 |
| MroXI | GAANNNNTTC | 1 cut(s) | 185 |
| MscI | TGGCCA | 1 cut(s) | 832 |
| MseI | TTAA | 5 cut(s) | 345, 450, 672, 1269, 1406 |
| Msp20I | TGGCCA | 1 cut(s) | 832 |
| MspI | CCGG | 4 cut(s) | 134, 307, 422, 553 |
| MspR9I | CCNGG | 3 cut(s) | 422, 933, 993 |
| Mva1269I | GAATGC | 4 cut(s) | 168, 502, 856, 1258 |
| MvaI | CCWGG | 2 cut(s) | 933, 993 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 127, 866, 1262 |
| NarI | GGCGCC | 1 cut(s) | 611 |
| NciI | CCSGG | 1 cut(s) | 422 |
| NcoI | CCATGG | 1 cut(s) | 111 |
| NdeI | CATATG | 1 cut(s) | 1261 |
| NdeII | GATC | 3 cut(s) | 259, 1150, 1300 |
| NlaIII | CATG | 3 cut(s) | 115, 211, 244 |
| NlaIV | GGNNCC | 6 cut(s) | 109, 305, 551, 612, 907, 919 |
| NmuCI | GTSAC | 5 cut(s) | 34, 40, 316, 412, 1333 |
| PciSI | GCTCTTC | 1 cut(s) | 191 |
| PctI | GAATGC | 4 cut(s) | 168, 502, 856, 1258 |
| PdmI | GAANNNNTTC | 1 cut(s) | 185 |
| PfeI | GAWTC | 3 cut(s) | 470, 727, 1291 |
| PflFI | GACNNNGTC | 1 cut(s) | 584 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 300 |
| PkrI | GCNGC | 3 cut(s) | 930, 1038, 1330 |
| PleI | GAGTC | 1 cut(s) | 529 |
| PluTI | GGCGCC | 1 cut(s) | 614 |
| PpsI | GAGTC | 1 cut(s) | 529 |
| PsiI | TTATAA | 1 cut(s) | 882 |
| Psp6I | CCWGG | 2 cut(s) | 931, 991 |
| PspFI | CCCAGC | 1 cut(s) | 458 |
| PspGI | CCWGG | 2 cut(s) | 931, 991 |
| PspN4I | GGNNCC | 6 cut(s) | 109, 305, 551, 612, 907, 919 |
| PspPI | GGNCC | 1 cut(s) | 304 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 100, 132 |
| PstI | CTGCAG | 1 cut(s) | 544 |
| PsuI | RGATCY | 1 cut(s) | 1150 |
| PsyI | GACNNNGTC | 1 cut(s) | 584 |
| RsaI | GTAC | 5 cut(s) | 392, 1189, 1277, 1434, 1443 |
| RsaNI | GTAC | 5 cut(s) | 391, 1188, 1276, 1433, 1442 |
| SalI | GTCGAC | 2 cut(s) | 202, 710 |
| SapI | GCTCTTC | 1 cut(s) | 191 |
| SaqAI | TTAA | 5 cut(s) | 345, 450, 672, 1269, 1406 |
| SatI | GCNGC | 3 cut(s) | 929, 1037, 1329 |
| Sau3AI | GATC | 3 cut(s) | 259, 1150, 1300 |
| Sau96I | GGNCC | 1 cut(s) | 304 |
| ScaI | AGTACT | 2 cut(s) | 1434, 1443 |
| SchI | GAGTC | 1 cut(s) | 530 |
| ScrFI | CCNGG | 3 cut(s) | 422, 933, 993 |
| SduI | GDGCHC | 1 cut(s) | 492 |
| SfaNI | GCATC | 7 cut(s) | 117, 141, 445, 685, 739, 964, 1231 |
| SfcI | CTRYAG | 2 cut(s) | 540, 1463 |
| SfoI | GGCGCC | 1 cut(s) | 612 |
| SinI | GGWCC | 1 cut(s) | 304 |
| SmlI | CTYRAG | 2 cut(s) | 155, 266 |
| SmoI | CTYRAG | 2 cut(s) | 155, 266 |
| Sse9I | AATT | 6 cut(s) | 328, 754, 1017, 1161, 1234, 1366 |
| SsiI | CCGC | 4 cut(s) | 322, 717, 928, 1328 |
| SspDI | GGCGCC | 1 cut(s) | 610 |
| SspI | AATATT | 1 cut(s) | 628 |
| StyD4I | CCNGG | 3 cut(s) | 420, 931, 991 |
| StyI | CCWWGG | 3 cut(s) | 111, 595, 765 |
| TaaI | ACNGT | 9 cut(s) | 34, 40, 46, 142, 201, 487, 622, 1432, 1458 |
| TaiI | ACGT | 3 cut(s) | 318, 351, 1059 |
| TaqI | TCGA | 6 cut(s) | 189, 203, 234, 711, 747, 1451 |
| TasI | AATT | 6 cut(s) | 328, 754, 1017, 1161, 1234, 1366 |
| TatI | WGTACW | 3 cut(s) | 1275, 1432, 1441 |
| TauI | GCSGC | 2 cut(s) | 931, 1331 |
| TfiI | GAWTC | 3 cut(s) | 470, 727, 1291 |
| Tru1I | TTAA | 5 cut(s) | 345, 450, 672, 1269, 1406 |
| Tru9I | TTAA | 5 cut(s) | 345, 450, 672, 1269, 1406 |
| TscAI | CASTG | 6 cut(s) | 39, 45, 51, 625, 727, 1215 |
| TseFI | GTSAC | 5 cut(s) | 34, 40, 316, 412, 1333 |
| TseI | GCWGC | 1 cut(s) | 1036 |
| Tsp45I | GTSAC | 5 cut(s) | 34, 40, 316, 412, 1333 |
| TspDTI | ATGAA | 4 cut(s) | 390, 1248, 1360, 1380 |
| TspGWI | ACGGA | 1 cut(s) | 855 |
| TspRI | CASTG | 6 cut(s) | 39, 45, 51, 625, 727, 1215 |
| Tth111I | GACNNNGTC | 1 cut(s) | 584 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 300 |
| VpaK11BI | GGWCC | 1 cut(s) | 304 |
| XapI | RAATTY | 1 cut(s) | 1017 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 214 |
| XmiI | GTMKAC | 5 cut(s) | 203, 507, 711, 948, 1223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 185 |
| ZrmI | AGTACT | 2 cut(s) | 1434, 1443 |