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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 203 |
| Acc36I | ACCTGC | 1 cut(s) | 352 |
| Acc65I | GGTACC | 1 cut(s) | 418 |
| AccB1I | GGYRCC | 2 cut(s) | 334, 418 |
| AccIII | TCCGGA | 1 cut(s) | 424 |
| AciI | CCGC | 1 cut(s) | 171 |
| AclWI | GGATC | 1 cut(s) | 381 |
| AcsI | RAATTY | 3 cut(s) | 228, 473, 611 |
| AcuI | CTGAAG | 2 cut(s) | 206, 435 |
| AdeI | CACNNNGTG | 1 cut(s) | 631 |
| AfaI | GTAC | 4 cut(s) | 318, 420, 500, 662 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 514 |
| AgsI | TTSAA | 2 cut(s) | 247, 707 |
| AleI | CACNNNNGTG | 1 cut(s) | 463 |
| AluBI | AGCT | 4 cut(s) | 455, 487, 548, 593 |
| AluI | AGCT | 4 cut(s) | 455, 487, 548, 593 |
| Alw26I | GTCTC | 2 cut(s) | 340, 576 |
| AlwI | GGATC | 1 cut(s) | 381 |
| Aor13HI | TCCGGA | 1 cut(s) | 424 |
| ApoI | RAATTY | 3 cut(s) | 228, 473, 611 |
| Asp718I | GGTACC | 1 cut(s) | 418 |
| AspS9I | GGNCC | 2 cut(s) | 364, 442 |
| AsuHPI | GGTGA | 1 cut(s) | 69 |
| AvaII | GGWCC | 2 cut(s) | 364, 442 |
| BanI | GGYRCC | 2 cut(s) | 334, 418 |
| BccI | CCATC | 2 cut(s) | 82, 400 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciVI | GTATCC | 2 cut(s) | 549, 680 |
| BcoDI | GTCTC | 2 cut(s) | 340, 576 |
| BfaI | CTAG | 2 cut(s) | 35, 320 |
| BfuAI | ACCTGC | 1 cut(s) | 352 |
| BfuI | GTATCC | 2 cut(s) | 549, 680 |
| BglII | AGATCT | 1 cut(s) | 20 |
| BisI | GCNGC | 1 cut(s) | 172 |
| BlsI | GCNGC | 1 cut(s) | 173 |
| Bme18I | GGWCC | 2 cut(s) | 364, 442 |
| BmgT120I | GGNCC | 2 cut(s) | 364, 442 |
| BmiI | GGNNCC | 3 cut(s) | 336, 366, 420 |
| BmsI | GCATC | 2 cut(s) | 47, 161 |
| BpmI | CTGGAG | 1 cut(s) | 719 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| Bsa29I | ATCGAT | 1 cut(s) | 598 |
| BsaI | GGTCTC | 1 cut(s) | 340 |
| BsaJI | CCNNGG | 1 cut(s) | 291 |
| BsaWI | WCCGGW | 1 cut(s) | 424 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 514 |
| BseAI | TCCGGA | 1 cut(s) | 424 |
| BseCI | ATCGAT | 1 cut(s) | 598 |
| BseDI | CCNNGG | 1 cut(s) | 291 |
| BseGI | GGATG | 3 cut(s) | 152, 504, 523 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BseMII | CTCAG | 1 cut(s) | 597 |
| BseYI | CCCAGC | 1 cut(s) | 544 |
| BsgI | GTGCAG | 1 cut(s) | 9 |
| BshNI | GGYRCC | 2 cut(s) | 334, 418 |
| BshVI | ATCGAT | 1 cut(s) | 598 |
| BsiSI | CCGG | 1 cut(s) | 425 |
| BslFI | GGGAC | 2 cut(s) | 350, 593 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 514 |
| BsmAI | GTCTC | 2 cut(s) | 340, 576 |
| BsmFI | GGGAC | 2 cut(s) | 350, 593 |
| Bso31I | GGTCTC | 1 cut(s) | 340 |
| Bsp13I | TCCGGA | 1 cut(s) | 424 |
| Bsp143I | GATC | 3 cut(s) | 20, 373, 595 |
| BspACI | CCGC | 1 cut(s) | 171 |
| BspCNI | CTCAG | 1 cut(s) | 598 |
| BspDI | ATCGAT | 1 cut(s) | 598 |
| BspEI | TCCGGA | 1 cut(s) | 424 |
| BspLI | GGNNCC | 3 cut(s) | 336, 366, 420 |
| BspMI | ACCTGC | 1 cut(s) | 352 |
| BspPI | GGATC | 1 cut(s) | 381 |
| BspT107I | GGYRCC | 2 cut(s) | 334, 418 |
| BspTNI | GGTCTC | 1 cut(s) | 340 |
| BssECI | CCNNGG | 1 cut(s) | 291 |
| BssMI | GATC | 3 cut(s) | 20, 373, 595 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 498 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 631 |
| BstC8I | GCNNGC | 1 cut(s) | 485 |
| BstDEI | CTNAG | 5 cut(s) | 101, 147, 330, 606, 651 |
| BstF5I | GGATG | 3 cut(s) | 152, 504, 523 |
| BstKTI | GATC | 3 cut(s) | 23, 376, 598 |
| BstMAI | GTCTC | 2 cut(s) | 340, 576 |
| BstMBI | GATC | 3 cut(s) | 20, 373, 595 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 23, 631 |
| BstNSI | RCATGY | 1 cut(s) | 676 |
| BstX2I | RGATCY | 1 cut(s) | 20 |
| BstYI | RGATCY | 1 cut(s) | 20 |
| Bsu15I | ATCGAT | 1 cut(s) | 598 |
| BsuI | GTATCC | 2 cut(s) | 549, 680 |
| BsuTUI | ATCGAT | 1 cut(s) | 598 |
| BtgZI | GCGATG | 2 cut(s) | 81, 653 |
| BtsCI | GGATG | 3 cut(s) | 152, 504, 523 |
| BveI | ACCTGC | 1 cut(s) | 352 |
| Cac8I | GCNNGC | 1 cut(s) | 485 |
| Cfr13I | GGNCC | 2 cut(s) | 364, 442 |
| ClaI | ATCGAT | 1 cut(s) | 598 |
| Csp6I | GTAC | 4 cut(s) | 317, 419, 499, 661 |
| CviAII | CATG | 1 cut(s) | 673 |
| CviJI | RGCY | 8 cut(s) | 73, 159, 174, 290, 455, 487, 548, 593 |
| CviKI_1 | RGCY | 8 cut(s) | 73, 159, 174, 290, 455, 487, 548, 593 |
| CviQI | GTAC | 4 cut(s) | 317, 419, 499, 661 |
| DdeI | CTNAG | 5 cut(s) | 101, 147, 330, 606, 651 |
| DpnI | GATC | 3 cut(s) | 22, 375, 597 |
| DpnII | GATC | 3 cut(s) | 20, 373, 595 |
| DraIII | CACNNNGTG | 1 cut(s) | 631 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| Eco31I | GGTCTC | 1 cut(s) | 340 |
| Eco47I | GGWCC | 2 cut(s) | 364, 442 |
| Eco57I | CTGAAG | 2 cut(s) | 206, 435 |
| EcoO109I | RGGNCCY | 1 cut(s) | 364 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| EcoT22I | ATGCAT | 1 cut(s) | 61 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaeI | CATG | 1 cut(s) | 676 |
| FaqI | GGGAC | 2 cut(s) | 350, 593 |
| FatI | CATG | 1 cut(s) | 672 |
| Fnu4HI | GCNGC | 1 cut(s) | 172 |
| FokI | GGATG | 3 cut(s) | 139, 491, 530 |
| Fsp4HI | GCNGC | 1 cut(s) | 172 |
| FspBI | CTAG | 2 cut(s) | 35, 320 |
| GluI | GCNGC | 1 cut(s) | 172 |
| GsaI | CCCAGC | 1 cut(s) | 548 |
| GsuI | CTGGAG | 1 cut(s) | 719 |
| HapII | CCGG | 1 cut(s) | 425 |
| Hin1II | CATG | 1 cut(s) | 676 |
| HpaII | CCGG | 1 cut(s) | 425 |
| HphI | GGTGA | 1 cut(s) | 69 |
| Hpy188I | TCNGA | 3 cut(s) | 264, 607, 715 |
| Hpy188III | TCNNGA | 6 cut(s) | 403, 425, 565, 617, 698, 725 |
| HpyAV | CCTTC | 3 cut(s) | 216, 259, 360 |
| HpyCH4III | ACNGT | 1 cut(s) | 498 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 59, 208, 301, 625, 634 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 23, 631 |
| HpyF3I | CTNAG | 5 cut(s) | 101, 147, 330, 606, 651 |
| Hsp92II | CATG | 1 cut(s) | 676 |
| Kpn2I | TCCGGA | 1 cut(s) | 424 |
| KpnI | GGTACC | 1 cut(s) | 422 |
| Kzo9I | GATC | 3 cut(s) | 20, 373, 595 |
| LweI | GCATC | 2 cut(s) | 47, 161 |
| MaeI | CTAG | 2 cut(s) | 35, 320 |
| MaeIII | GTNAC | 1 cut(s) | 7 |
| MalI | GATC | 3 cut(s) | 22, 375, 597 |
| MboI | GATC | 3 cut(s) | 20, 373, 595 |
| MboII | GAAGA | 3 cut(s) | 33, 145, 441 |
| MflI | RGATCY | 1 cut(s) | 20 |
| MluCI | AATT | 5 cut(s) | 228, 473, 527, 611, 707 |
| MnlI | CCTC | 7 cut(s) | 409, 421, 432, 601, 639, 675, 694 |
| Mph1103I | ATGCAT | 1 cut(s) | 61 |
| MroI | TCCGGA | 1 cut(s) | 424 |
| MseI | TTAA | 3 cut(s) | 176, 258, 477 |
| MslI | CAYNNNNRTG | 3 cut(s) | 340, 463, 516 |
| MspA1I | CMGCKG | 1 cut(s) | 548 |
| MspI | CCGG | 1 cut(s) | 425 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 23, 631 |
| NdeII | GATC | 3 cut(s) | 20, 373, 595 |
| NlaIII | CATG | 1 cut(s) | 676 |
| NlaIV | GGNNCC | 3 cut(s) | 336, 366, 420 |
| NmuCI | GTSAC | 1 cut(s) | 7 |
| NsiI | ATGCAT | 1 cut(s) | 61 |
| NspI | RCATGY | 1 cut(s) | 676 |
| OliI | CACNNNNGTG | 1 cut(s) | 463 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 676 |
| PkrI | GCNGC | 1 cut(s) | 173 |
| PpuMI | RGGWCCY | 1 cut(s) | 364 |
| PsiI | TTATAA | 1 cut(s) | 203 |
| Psp5II | RGGWCCY | 1 cut(s) | 364 |
| PspFI | CCCAGC | 1 cut(s) | 544 |
| PspN4I | GGNNCC | 3 cut(s) | 336, 366, 420 |
| PspPI | GGNCC | 2 cut(s) | 364, 442 |
| PspPPI | RGGWCCY | 1 cut(s) | 364 |
| PsuI | RGATCY | 1 cut(s) | 20 |
| PvuII | CAGCTG | 1 cut(s) | 548 |
| RsaI | GTAC | 4 cut(s) | 318, 420, 500, 662 |
| RsaNI | GTAC | 4 cut(s) | 317, 419, 499, 661 |
| RseI | CAYNNNNRTG | 3 cut(s) | 340, 463, 516 |
| SaqAI | TTAA | 3 cut(s) | 176, 258, 477 |
| SatI | GCNGC | 1 cut(s) | 172 |
| Sau3AI | GATC | 3 cut(s) | 20, 373, 595 |
| Sau96I | GGNCC | 2 cut(s) | 364, 442 |
| SfaNI | GCATC | 2 cut(s) | 47, 161 |
| SinI | GGWCC | 2 cut(s) | 364, 442 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 340, 463, 516 |
| Sse9I | AATT | 5 cut(s) | 228, 473, 527, 611, 707 |
| SsiI | CCGC | 1 cut(s) | 171 |
| SspMI | CTAG | 2 cut(s) | 35, 320 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 1 cut(s) | 498 |
| TaqI | TCGA | 3 cut(s) | 402, 564, 598 |
| TasI | AATT | 5 cut(s) | 228, 473, 527, 611, 707 |
| TatI | WGTACW | 1 cut(s) | 498 |
| TauI | GCSGC | 1 cut(s) | 174 |
| Tru1I | TTAA | 3 cut(s) | 176, 258, 477 |
| Tru9I | TTAA | 3 cut(s) | 176, 258, 477 |
| TseFI | GTSAC | 1 cut(s) | 7 |
| Tsp45I | GTSAC | 1 cut(s) | 7 |
| TspDTI | ATGAA | 3 cut(s) | 17, 534, 550 |
| VpaK11BI | GGWCC | 2 cut(s) | 364, 442 |
| XapI | RAATTY | 3 cut(s) | 228, 473, 611 |
| XceI | RCATGY | 1 cut(s) | 676 |
| XspI | CTAG | 2 cut(s) | 35, 320 |
| Zsp2I | ATGCAT | 1 cut(s) | 61 |