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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 162 |
| AarI | CACCTGC | 1 cut(s) | 799 |
| Acc36I | ACCTGC | 1 cut(s) | 799 |
| Acc65I | GGTACC | 1 cut(s) | 348 |
| AccB1I | GGYRCC | 1 cut(s) | 348 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1225 |
| AccBSI | CCGCTC | 1 cut(s) | 548 |
| AccII | CGCG | 1 cut(s) | 332 |
| AciI | CCGC | 3 cut(s) | 332, 548, 1365 |
| AclWI | GGATC | 1 cut(s) | 1355 |
| AcoI | YGGCCR | 1 cut(s) | 1465 |
| AcsI | RAATTY | 3 cut(s) | 754, 798, 1094 |
| AfaI | GTAC | 4 cut(s) | 350, 520, 849, 1315 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 343, 967, 1225 |
| AgeI | ACCGGT | 1 cut(s) | 383 |
| AgsI | TTSAA | 4 cut(s) | 52, 235, 602, 760 |
| AhlI | ACTAGT | 1 cut(s) | 185 |
| AjnI | CCWGG | 4 cut(s) | 214, 949, 966, 1501 |
| AleI | CACNNNNGTG | 1 cut(s) | 32 |
| Alw21I | GWGCWC | 1 cut(s) | 880 |
| AlwI | GGATC | 1 cut(s) | 1355 |
| AoxI | GGCC | 4 cut(s) | 141, 829, 1042, 1465 |
| ApeKI | GCWGC | 6 cut(s) | 605, 617, 1139, 1166, 1414, 1447 |
| ApoI | RAATTY | 3 cut(s) | 754, 798, 1094 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 102, 134 |
| AsiGI | ACCGGT | 1 cut(s) | 383 |
| Asp718I | GGTACC | 1 cut(s) | 348 |
| AspS9I | GGNCC | 3 cut(s) | 334, 1042, 1420 |
| AsuHPI | GGTGA | 1 cut(s) | 955 |
| AsuNHI | GCTAGC | 1 cut(s) | 1135 |
| AvaII | GGWCC | 2 cut(s) | 334, 1420 |
| BaeGI | GKGCMC | 1 cut(s) | 558 |
| BalI | TGGCCA | 1 cut(s) | 1467 |
| BanI | GGYRCC | 1 cut(s) | 348 |
| BanII | GRGCYC | 1 cut(s) | 880 |
| Bbv12I | GWGCWC | 1 cut(s) | 880 |
| BbvI | GCAGC | 6 cut(s) | 592, 604, 1126, 1153, 1426, 1434 |
| BccI | CCATC | 5 cut(s) | 491, 974, 1033, 1202, 1247 |
| BceAI | ACGGC | 1 cut(s) | 184 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 282, 316, 793, 827 |
| BciT130I | CCWGG | 4 cut(s) | 216, 951, 968, 1503 |
| BcuI | ACTAGT | 1 cut(s) | 185 |
| BfaI | CTAG | 3 cut(s) | 186, 1136, 1301 |
| BfmI | CTRYAG | 2 cut(s) | 606, 618 |
| BfuAI | ACCTGC | 1 cut(s) | 799 |
| BisI | GCNGC | 6 cut(s) | 606, 618, 1140, 1167, 1415, 1448 |
| BlsI | GCNGC | 6 cut(s) | 607, 619, 1141, 1168, 1416, 1449 |
| Bme1390I | CCNGG | 4 cut(s) | 216, 951, 968, 1503 |
| Bme18I | GGWCC | 2 cut(s) | 334, 1420 |
| BmgT120I | GGNCC | 3 cut(s) | 334, 1042, 1420 |
| BmiI | GGNNCC | 1 cut(s) | 350 |
| BmrFI | CCNGG | 4 cut(s) | 216, 951, 968, 1503 |
| BmrI | ACTGGG | 1 cut(s) | 355 |
| BmsI | GCATC | 3 cut(s) | 460, 474, 1117 |
| BmtI | GCTAGC | 1 cut(s) | 1139 |
| BmuI | ACTGGG | 1 cut(s) | 355 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 62, 94, 945, 977 |
| BpmI | CTGGAG | 1 cut(s) | 89 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1046 |
| BpuEI | CTTGAG | 1 cut(s) | 584 |
| BsaJI | CCNNGG | 3 cut(s) | 138, 966, 1502 |
| BsaWI | WCCGGW | 1 cut(s) | 383 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 343, 967, 1225 |
| Bse118I | RCCGGY | 1 cut(s) | 383 |
| Bse1I | ACTGG | 3 cut(s) | 361, 410, 1151 |
| BseBI | CCWGG | 4 cut(s) | 216, 951, 968, 1503 |
| BseDI | CCNNGG | 3 cut(s) | 138, 966, 1502 |
| BseGI | GGATG | 1 cut(s) | 475 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 343, 967, 1225 |
| BseMII | CTCAG | 4 cut(s) | 146, 893, 1221, 1359 |
| BseNI | ACTGG | 3 cut(s) | 361, 410, 1151 |
| BseSI | GKGCMC | 1 cut(s) | 558 |
| BseXI | GCAGC | 6 cut(s) | 592, 604, 1126, 1153, 1426, 1434 |
| Bsh1236I | CGCG | 1 cut(s) | 332 |
| Bsh1285I | CGRYCG | 1 cut(s) | 384 |
| BshFI | GGCC | 4 cut(s) | 143, 831, 1044, 1467 |
| BshNI | GGYRCC | 1 cut(s) | 348 |
| BshTI | ACCGGT | 1 cut(s) | 383 |
| BsiEI | CGRYCG | 1 cut(s) | 384 |
| BsiHKAI | GWGCWC | 1 cut(s) | 880 |
| BsiSI | CCGG | 1 cut(s) | 384 |
| BslFI | GGGAC | 4 cut(s) | 748, 881, 1270, 1338 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 343, 967, 1225 |
| BsmFI | GGGAC | 4 cut(s) | 748, 881, 1270, 1338 |
| BsmI | GAATGC | 1 cut(s) | 487 |
| BsnI | GGCC | 4 cut(s) | 143, 831, 1044, 1467 |
| Bsp1286I | GDGCHC | 2 cut(s) | 558, 880 |
| Bsp1407I | TGTACA | 1 cut(s) | 847 |
| Bsp143I | GATC | 2 cut(s) | 535, 1360 |
| BspACI | CCGC | 3 cut(s) | 332, 548, 1365 |
| BspANI | GGCC | 4 cut(s) | 143, 831, 1044, 1467 |
| BspCNI | CTCAG | 4 cut(s) | 145, 892, 1222, 1360 |
| BspFNI | CGCG | 1 cut(s) | 332 |
| BspLI | GGNNCC | 1 cut(s) | 350 |
| BspMAI | CTGCAG | 2 cut(s) | 610, 622 |
| BspMI | ACCTGC | 1 cut(s) | 799 |
| BspOI | GCTAGC | 1 cut(s) | 1139 |
| BspPI | GGATC | 1 cut(s) | 1355 |
| BspT107I | GGYRCC | 1 cut(s) | 348 |
| BsrBI | CCGCTC | 1 cut(s) | 548 |
| BsrFI | RCCGGY | 1 cut(s) | 383 |
| BsrGI | TGTACA | 1 cut(s) | 847 |
| BsrI | ACTGG | 3 cut(s) | 361, 410, 1151 |
| BssAI | RCCGGY | 1 cut(s) | 383 |
| BssECI | CCNNGG | 3 cut(s) | 138, 966, 1502 |
| BssMI | GATC | 2 cut(s) | 535, 1360 |
| BssT1I | CCWWGG | 1 cut(s) | 138 |
| Bst2UI | CCWGG | 4 cut(s) | 216, 951, 968, 1503 |
| Bst4CI | ACNGT | 3 cut(s) | 729, 889, 1318 |
| Bst6I | CTCTTC | 2 cut(s) | 459, 1179 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 614 |
| BstAUI | TGTACA | 1 cut(s) | 847 |
| BstC8I | GCNNGC | 4 cut(s) | 273, 1052, 1137, 1465 |
| BstDEI | CTNAG | 6 cut(s) | 132, 879, 1046, 1230, 1368, 1443 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 341, 965 |
| BstF5I | GGATG | 1 cut(s) | 475 |
| BstFNI | CGCG | 1 cut(s) | 332 |
| BstKTI | GATC | 2 cut(s) | 538, 1363 |
| BstMBI | GATC | 2 cut(s) | 535, 1360 |
| BstMCI | CGRYCG | 1 cut(s) | 384 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 614, 770, 1136 |
| BstNI | CCWGG | 4 cut(s) | 216, 951, 968, 1503 |
| BstNSI | RCATGY | 1 cut(s) | 1054 |
| BstSCI | CCNGG | 4 cut(s) | 214, 949, 966, 1501 |
| BstSFI | CTRYAG | 2 cut(s) | 606, 618 |
| BstSLI | GKGCMC | 1 cut(s) | 558 |
| BstUI | CGCG | 1 cut(s) | 332 |
| BstV1I | GCAGC | 6 cut(s) | 592, 604, 1126, 1153, 1426, 1434 |
| BstX2I | RGATCY | 1 cut(s) | 1360 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 205, 1430 |
| BstYI | RGATCY | 1 cut(s) | 1360 |
| BsuRI | GGCC | 4 cut(s) | 143, 831, 1044, 1467 |
| BtsCI | GGATG | 1 cut(s) | 475 |
| BtsI | GCAGTG | 1 cut(s) | 780 |
| BtsIMutI | CAGTG | 1 cut(s) | 780 |
| BveI | ACCTGC | 1 cut(s) | 799 |
| Cac8I | GCNNGC | 4 cut(s) | 273, 1052, 1137, 1465 |
| Cfr10I | RCCGGY | 1 cut(s) | 383 |
| Cfr13I | GGNCC | 3 cut(s) | 334, 1042, 1420 |
| CseI | GACGC | 1 cut(s) | 1010 |
| Csp6I | GTAC | 4 cut(s) | 349, 519, 848, 1314 |
| CspAI | ACCGGT | 1 cut(s) | 383 |
| CviAII | CATG | 5 cut(s) | 116, 460, 794, 1051, 1081 |
| CviQI | GTAC | 4 cut(s) | 349, 519, 848, 1314 |
| DdeI | CTNAG | 6 cut(s) | 132, 879, 1046, 1230, 1368, 1443 |
| DpnI | GATC | 2 cut(s) | 537, 1362 |
| DpnII | GATC | 2 cut(s) | 535, 1360 |
| EaeI | YGGCCR | 1 cut(s) | 1465 |
| Eam1104I | CTCTTC | 2 cut(s) | 459, 1179 |
| EarI | CTCTTC | 2 cut(s) | 459, 1179 |
| Ecl136II | GAGCTC | 1 cut(s) | 878 |
| Eco130I | CCWWGG | 1 cut(s) | 138 |
| Eco147I | AGGCCT | 1 cut(s) | 143 |
| Eco24I | GRGCYC | 1 cut(s) | 880 |
| Eco47I | GGWCC | 2 cut(s) | 334, 1420 |
| Eco53kI | GAGCTC | 1 cut(s) | 878 |
| EcoICRI | GAGCTC | 1 cut(s) | 878 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 341, 965 |
| EcoRII | CCWGG | 4 cut(s) | 214, 949, 966, 1501 |
| EcoT14I | CCWWGG | 1 cut(s) | 138 |
| EcoT22I | ATGCAT | 1 cut(s) | 489 |
| EcoT38I | GRGCYC | 1 cut(s) | 880 |
| ErhI | CCWWGG | 1 cut(s) | 138 |
| FaeI | CATG | 5 cut(s) | 119, 463, 797, 1054, 1084 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 255, 287, 666, 698 |
| FaqI | GGGAC | 4 cut(s) | 748, 881, 1270, 1338 |
| FatI | CATG | 5 cut(s) | 115, 459, 793, 1050, 1080 |
| FauI | CCCGC | 2 cut(s) | 541, 1372 |
| Fnu4HI | GCNGC | 6 cut(s) | 606, 618, 1140, 1167, 1415, 1448 |
| FokI | GGATG | 1 cut(s) | 482 |
| FriOI | GRGCYC | 1 cut(s) | 880 |
| Fsp4HI | GCNGC | 6 cut(s) | 606, 618, 1140, 1167, 1415, 1448 |
| FspBI | CTAG | 3 cut(s) | 186, 1136, 1301 |
| GluI | GCNGC | 6 cut(s) | 606, 618, 1140, 1167, 1415, 1448 |
| GsuI | CTGGAG | 1 cut(s) | 89 |
| HaeIII | GGCC | 4 cut(s) | 143, 831, 1044, 1467 |
| HapII | CCGG | 1 cut(s) | 384 |
| HgaI | GACGC | 1 cut(s) | 1010 |
| Hin1II | CATG | 5 cut(s) | 119, 463, 797, 1054, 1084 |
| HincII | GTYRAC | 1 cut(s) | 11 |
| HindII | GTYRAC | 1 cut(s) | 11 |
| HindIII | AAGCTT | 1 cut(s) | 1208 |
| HinfI | GANTC | 3 cut(s) | 251, 1405, 1519 |
| HpaII | CCGG | 1 cut(s) | 384 |
| HphI | GGTGA | 1 cut(s) | 955 |
| Hpy166II | GTNNAC | 3 cut(s) | 11, 457, 680 |
| Hpy188I | TCNGA | 7 cut(s) | 135, 493, 577, 882, 919, 1353, 1402 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 935, 1010 |
| Hpy8I | GTNNAC | 3 cut(s) | 11, 457, 680 |
| Hpy99I | CGWCG | 1 cut(s) | 1026 |
| HpyCH4III | ACNGT | 3 cut(s) | 729, 889, 1318 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 614, 770, 1136 |
| HpyF3I | CTNAG | 6 cut(s) | 132, 879, 1046, 1230, 1368, 1443 |
| Hsp92II | CATG | 5 cut(s) | 119, 463, 797, 1054, 1084 |
| KpnI | GGTACC | 1 cut(s) | 352 |
| Kzo9I | GATC | 2 cut(s) | 535, 1360 |
| LmnI | GCTCC | 1 cut(s) | 875 |
| Lsp1109I | GCAGC | 6 cut(s) | 592, 604, 1126, 1153, 1426, 1434 |
| LweI | GCATC | 3 cut(s) | 460, 474, 1117 |
| MaeI | CTAG | 3 cut(s) | 186, 1136, 1301 |
| MaeIII | GTNAC | 2 cut(s) | 503, 889 |
| MalI | GATC | 2 cut(s) | 537, 1362 |
| MbiI | CCGCTC | 1 cut(s) | 548 |
| MboI | GATC | 2 cut(s) | 535, 1360 |
| MboII | GAAGA | 6 cut(s) | 476, 809, 913, 1196, 1282, 1346 |
| MfeI | CAATTG | 4 cut(s) | 280, 375, 714, 786 |
| MflI | RGATCY | 1 cut(s) | 1360 |
| MhlI | GDGCHC | 2 cut(s) | 558, 880 |
| MlsI | TGGCCA | 1 cut(s) | 1467 |
| MluNI | TGGCCA | 1 cut(s) | 1467 |
| MlyI | GAGTC | 1 cut(s) | 260 |
| MnlI | CCTC | 6 cut(s) | 460, 624, 798, 891, 971, 1195 |
| Mox20I | TGGCCA | 1 cut(s) | 1467 |
| Mph1103I | ATGCAT | 1 cut(s) | 489 |
| MscI | TGGCCA | 1 cut(s) | 1467 |
| MseI | TTAA | 4 cut(s) | 240, 1113, 1235, 1535 |
| MslI | CAYNNNNRTG | 3 cut(s) | 32, 203, 862 |
| Msp20I | TGGCCA | 1 cut(s) | 1467 |
| MspA1I | CMGCKG | 2 cut(s) | 1367, 1417 |
| MspI | CCGG | 1 cut(s) | 384 |
| MspR9I | CCNGG | 4 cut(s) | 216, 951, 968, 1503 |
| MunI | CAATTG | 4 cut(s) | 280, 375, 714, 786 |
| Mva1269I | GAATGC | 1 cut(s) | 487 |
| MvaI | CCWGG | 4 cut(s) | 216, 951, 968, 1503 |
| MvnI | CGCG | 1 cut(s) | 332 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 614, 770, 1136 |
| NdeII | GATC | 2 cut(s) | 535, 1360 |
| NheI | GCTAGC | 1 cut(s) | 1135 |
| NlaIII | CATG | 5 cut(s) | 119, 463, 797, 1054, 1084 |
| NlaIV | GGNNCC | 1 cut(s) | 350 |
| NsiI | ATGCAT | 1 cut(s) | 489 |
| NspI | RCATGY | 1 cut(s) | 1054 |
| OliI | CACNNNNGTG | 1 cut(s) | 32 |
| PaeI | GCATGC | 1 cut(s) | 1054 |
| PaqCI | CACCTGC | 1 cut(s) | 799 |
| PceI | AGGCCT | 1 cut(s) | 143 |
| PctI | GAATGC | 1 cut(s) | 487 |
| PfeI | GAWTC | 2 cut(s) | 1405, 1519 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1225 |
| PfoI | TCCNGGA | 1 cut(s) | 949 |
| PinAI | ACCGGT | 1 cut(s) | 383 |
| PkrI | GCNGC | 6 cut(s) | 607, 619, 1141, 1168, 1416, 1449 |
| PleI | GAGTC | 1 cut(s) | 259 |
| PpsI | GAGTC | 1 cut(s) | 259 |
| PsiI | TTATAA | 1 cut(s) | 162 |
| Psp124BI | GAGCTC | 1 cut(s) | 880 |
| Psp6I | CCWGG | 4 cut(s) | 214, 949, 966, 1501 |
| PspGI | CCWGG | 4 cut(s) | 214, 949, 966, 1501 |
| PspN4I | GGNNCC | 1 cut(s) | 350 |
| PspPI | GGNCC | 3 cut(s) | 334, 1042, 1420 |
| PstI | CTGCAG | 2 cut(s) | 610, 622 |
| PsuI | RGATCY | 1 cut(s) | 1360 |
| PvuII | CAGCTG | 1 cut(s) | 1417 |
| RsaI | GTAC | 4 cut(s) | 350, 520, 849, 1315 |
| RsaNI | GTAC | 4 cut(s) | 349, 519, 848, 1314 |
| RseI | CAYNNNNRTG | 3 cut(s) | 32, 203, 862 |
| SacI | GAGCTC | 1 cut(s) | 880 |
| SaqAI | TTAA | 4 cut(s) | 240, 1113, 1235, 1535 |
| SatI | GCNGC | 6 cut(s) | 606, 618, 1140, 1167, 1415, 1448 |
| Sau3AI | GATC | 2 cut(s) | 535, 1360 |
| Sau96I | GGNCC | 3 cut(s) | 334, 1042, 1420 |
| SchI | GAGTC | 1 cut(s) | 260 |
| ScrFI | CCNGG | 4 cut(s) | 216, 951, 968, 1503 |
| SduI | GDGCHC | 2 cut(s) | 558, 880 |
| SfaNI | GCATC | 3 cut(s) | 460, 474, 1117 |
| SfcI | CTRYAG | 2 cut(s) | 606, 618 |
| SinI | GGWCC | 2 cut(s) | 334, 1420 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 32, 203, 862 |
| SmlI | CTYRAG | 1 cut(s) | 563 |
| SmoI | CTYRAG | 1 cut(s) | 563 |
| SpeI | ACTAGT | 1 cut(s) | 185 |
| SphI | GCATGC | 1 cut(s) | 1054 |
| SseBI | AGGCCT | 1 cut(s) | 143 |
| SsiI | CCGC | 3 cut(s) | 332, 548, 1365 |
| SspMI | CTAG | 3 cut(s) | 186, 1136, 1301 |
| SstI | GAGCTC | 1 cut(s) | 880 |
| StuI | AGGCCT | 1 cut(s) | 143 |
| StyD4I | CCNGG | 4 cut(s) | 214, 949, 966, 1501 |
| StyI | CCWWGG | 1 cut(s) | 138 |
| TaaI | ACNGT | 3 cut(s) | 729, 889, 1318 |
| TaqI | TCGA | 7 cut(s) | 80, 108, 302, 709, 803, 1024, 1484 |
| TatI | WGTACW | 2 cut(s) | 518, 847 |
| TfiI | GAWTC | 2 cut(s) | 1405, 1519 |
| Tru1I | TTAA | 4 cut(s) | 240, 1113, 1235, 1535 |
| Tru9I | TTAA | 4 cut(s) | 240, 1113, 1235, 1535 |
| TscAI | CASTG | 1 cut(s) | 780 |
| TseI | GCWGC | 6 cut(s) | 605, 617, 1139, 1166, 1414, 1447 |
| TspRI | CASTG | 1 cut(s) | 780 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1225 |
| VpaK11BI | GGWCC | 2 cut(s) | 334, 1420 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 341, 965 |
| XapI | RAATTY | 3 cut(s) | 754, 798, 1094 |
| XceI | RCATGY | 1 cut(s) | 1054 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1430 |
| XspI | CTAG | 3 cut(s) | 186, 1136, 1301 |
| Zsp2I | ATGCAT | 1 cut(s) | 489 |