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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 2 cut(s) | 127, 213 |
| AccII | CGCG | 1 cut(s) | 72 |
| AccIII | TCCGGA | 1 cut(s) | 328 |
| AciI | CCGC | 1 cut(s) | 54 |
| AclWI | GGATC | 3 cut(s) | 194, 207, 371 |
| AcsI | RAATTY | 3 cut(s) | 117, 241, 400 |
| AcyI | GRCGYC | 1 cut(s) | 214 |
| AgsI | TTSAA | 1 cut(s) | 98 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 227, 259 |
| AleI | CACNNNNGTG | 1 cut(s) | 39 |
| AluBI | AGCT | 1 cut(s) | 433 |
| AluI | AGCT | 1 cut(s) | 433 |
| Alw21I | GWGCWC | 1 cut(s) | 46 |
| Alw44I | GTGCAC | 1 cut(s) | 42 |
| AlwI | GGATC | 3 cut(s) | 194, 207, 371 |
| Aor13HI | TCCGGA | 1 cut(s) | 328 |
| ApaLI | GTGCAC | 1 cut(s) | 42 |
| ApeKI | GCWGC | 2 cut(s) | 51, 430 |
| ApoI | RAATTY | 3 cut(s) | 117, 241, 400 |
| AseI | ATTAAT | 1 cut(s) | 299 |
| AspLEI | GCGC | 3 cut(s) | 74, 216, 274 |
| AsuHPI | GGTGA | 1 cut(s) | 239 |
| BaeGI | GKGCMC | 1 cut(s) | 46 |
| BamHI | GGATCC | 1 cut(s) | 199 |
| BanI | GGYRCC | 2 cut(s) | 127, 213 |
| BbsI | GAAGAC | 1 cut(s) | 399 |
| Bbv12I | GWGCWC | 1 cut(s) | 46 |
| BbvI | GCAGC | 2 cut(s) | 38, 442 |
| BclI | TGATCA | 1 cut(s) | 31 |
| BfaI | CTAG | 1 cut(s) | 111 |
| BfoI | RGCGCY | 1 cut(s) | 217 |
| BisI | GCNGC | 2 cut(s) | 52, 431 |
| BlsI | GCNGC | 2 cut(s) | 53, 432 |
| BmiI | GGNNCC | 3 cut(s) | 129, 201, 215 |
| BpiI | GAAGAC | 1 cut(s) | 399 |
| BsaHI | GRCGYC | 1 cut(s) | 214 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| Bse1I | ACTGG | 1 cut(s) | 229 |
| BseAI | TCCGGA | 1 cut(s) | 328 |
| BseGI | GGATG | 1 cut(s) | 159 |
| BseMII | CTCAG | 1 cut(s) | 153 |
| BseNI | ACTGG | 1 cut(s) | 229 |
| BseSI | GKGCMC | 1 cut(s) | 46 |
| BseXI | GCAGC | 2 cut(s) | 38, 442 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshNI | GGYRCC | 2 cut(s) | 127, 213 |
| BsiHKAI | GWGCWC | 1 cut(s) | 46 |
| BsiSI | CCGG | 1 cut(s) | 329 |
| BsmI | GAATGC | 1 cut(s) | 324 |
| Bsp1286I | GDGCHC | 1 cut(s) | 46 |
| Bsp13I | TCCGGA | 1 cut(s) | 328 |
| Bsp143I | GATC | 3 cut(s) | 31, 199, 363 |
| BspACI | CCGC | 1 cut(s) | 54 |
| BspCNI | CTCAG | 1 cut(s) | 152 |
| BspEI | TCCGGA | 1 cut(s) | 328 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspLI | GGNNCC | 3 cut(s) | 129, 201, 215 |
| BspPI | GGATC | 3 cut(s) | 194, 207, 371 |
| BspT107I | GGYRCC | 2 cut(s) | 127, 213 |
| BsrI | ACTGG | 1 cut(s) | 229 |
| BssMI | GATC | 3 cut(s) | 31, 199, 363 |
| BssNI | GRCGYC | 1 cut(s) | 214 |
| Bst6I | CTCTTC | 1 cut(s) | 174 |
| BstACI | GRCGYC | 1 cut(s) | 214 |
| BstDEI | CTNAG | 2 cut(s) | 139, 417 |
| BstF5I | GGATG | 1 cut(s) | 159 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstH2I | RGCGCY | 1 cut(s) | 217 |
| BstHHI | GCGC | 3 cut(s) | 74, 216, 274 |
| BstKTI | GATC | 3 cut(s) | 34, 202, 366 |
| BstMBI | GATC | 3 cut(s) | 31, 199, 363 |
| BstSLI | GKGCMC | 1 cut(s) | 46 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 2 cut(s) | 38, 442 |
| BstV2I | GAAGAC | 1 cut(s) | 399 |
| BstX2I | RGATCY | 1 cut(s) | 199 |
| BstYI | RGATCY | 1 cut(s) | 199 |
| BtsCI | GGATG | 1 cut(s) | 159 |
| CfoI | GCGC | 3 cut(s) | 74, 216, 274 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 334, 369 |
| CviAII | CATG | 4 cut(s) | 10, 196, 367, 376 |
| CviJI | RGCY | 5 cut(s) | 17, 51, 109, 161, 433 |
| CviKI_1 | RGCY | 5 cut(s) | 17, 51, 109, 161, 433 |
| DdeI | CTNAG | 2 cut(s) | 139, 417 |
| DinI | GGCGCC | 1 cut(s) | 215 |
| DpnI | GATC | 3 cut(s) | 33, 201, 365 |
| DpnII | GATC | 3 cut(s) | 31, 199, 363 |
| Eam1104I | CTCTTC | 1 cut(s) | 174 |
| EarI | CTCTTC | 1 cut(s) | 174 |
| EgeI | GGCGCC | 1 cut(s) | 215 |
| EheI | GGCGCC | 1 cut(s) | 215 |
| FaeI | CATG | 4 cut(s) | 13, 199, 370, 379 |
| FaiI | YATR | 8 cut(s) | 11, 133, 135, 197, 221, 368, 377, 445 |
| FatI | CATG | 4 cut(s) | 9, 195, 366, 375 |
| FbaI | TGATCA | 1 cut(s) | 31 |
| Fnu4HI | GCNGC | 2 cut(s) | 52, 431 |
| FokI | GGATG | 1 cut(s) | 166 |
| Fsp4HI | GCNGC | 2 cut(s) | 52, 431 |
| FspAI | RTGCGCAY | 1 cut(s) | 273 |
| FspBI | CTAG | 1 cut(s) | 111 |
| FspI | TGCGCA | 1 cut(s) | 273 |
| GlaI | GCGC | 3 cut(s) | 73, 215, 273 |
| GluI | GCNGC | 2 cut(s) | 52, 431 |
| HaeII | RGCGCY | 1 cut(s) | 217 |
| HapII | CCGG | 1 cut(s) | 329 |
| HhaI | GCGC | 3 cut(s) | 74, 216, 274 |
| Hin1I | GRCGYC | 1 cut(s) | 214 |
| Hin1II | CATG | 4 cut(s) | 13, 199, 370, 379 |
| Hin6I | GCGC | 3 cut(s) | 72, 214, 272 |
| HinP1I | GCGC | 3 cut(s) | 72, 214, 272 |
| HincII | GTYRAC | 1 cut(s) | 25 |
| HindII | GTYRAC | 1 cut(s) | 25 |
| HinfI | GANTC | 1 cut(s) | 169 |
| HpaII | CCGG | 1 cut(s) | 329 |
| HphI | GGTGA | 1 cut(s) | 239 |
| Hpy166II | GTNNAC | 2 cut(s) | 25, 44 |
| Hpy188III | TCNNGA | 2 cut(s) | 173, 329 |
| Hpy8I | GTNNAC | 2 cut(s) | 25, 44 |
| HpyAV | CCTTC | 1 cut(s) | 373 |
| HpyCH4V | TGCA | 1 cut(s) | 44 |
| HpyF3I | CTNAG | 2 cut(s) | 139, 417 |
| Hsp92I | GRCGYC | 1 cut(s) | 214 |
| Hsp92II | CATG | 4 cut(s) | 13, 199, 370, 379 |
| HspAI | GCGC | 3 cut(s) | 72, 214, 272 |
| KasI | GGCGCC | 1 cut(s) | 213 |
| Kpn2I | TCCGGA | 1 cut(s) | 328 |
| Ksp22I | TGATCA | 1 cut(s) | 31 |
| Kzo9I | GATC | 3 cut(s) | 31, 199, 363 |
| LmnI | GCTCC | 1 cut(s) | 331 |
| LpnPI | CCDG | 6 cut(s) | 24, 42, 126, 210, 306, 342 |
| Lsp1109I | GCAGC | 2 cut(s) | 38, 442 |
| MaeI | CTAG | 1 cut(s) | 111 |
| MaeIII | GTNAC | 1 cut(s) | 371 |
| MalI | GATC | 3 cut(s) | 33, 201, 365 |
| MboI | GATC | 3 cut(s) | 31, 199, 363 |
| MboII | GAAGA | 2 cut(s) | 191, 404 |
| MflI | RGATCY | 1 cut(s) | 199 |
| MhlI | GDGCHC | 1 cut(s) | 46 |
| MluCI | AATT | 4 cut(s) | 117, 241, 296, 400 |
| Mly113I | GGCGCC | 1 cut(s) | 214 |
| MmeI | TCCRAC | 1 cut(s) | 86 |
| MnlI | CCTC | 3 cut(s) | 204, 227, 285 |
| MroI | TCCGGA | 1 cut(s) | 328 |
| MseI | TTAA | 3 cut(s) | 206, 258, 299 |
| MslI | CAYNNNNRTG | 1 cut(s) | 39 |
| MspI | CCGG | 1 cut(s) | 329 |
| Mva1269I | GAATGC | 1 cut(s) | 324 |
| MvnI | CGCG | 1 cut(s) | 72 |
| NarI | GGCGCC | 1 cut(s) | 214 |
| NdeII | GATC | 3 cut(s) | 31, 199, 363 |
| NlaIII | CATG | 4 cut(s) | 13, 199, 370, 379 |
| NlaIV | GGNNCC | 3 cut(s) | 129, 201, 215 |
| NsbI | TGCGCA | 1 cut(s) | 273 |
| OliI | CACNNNNGTG | 1 cut(s) | 39 |
| PctI | GAATGC | 1 cut(s) | 324 |
| PfeI | GAWTC | 1 cut(s) | 169 |
| PkrI | GCNGC | 2 cut(s) | 53, 432 |
| PluTI | GGCGCC | 1 cut(s) | 217 |
| PshBI | ATTAAT | 1 cut(s) | 299 |
| PspN4I | GGNNCC | 3 cut(s) | 129, 201, 215 |
| PsuI | RGATCY | 1 cut(s) | 199 |
| RseI | CAYNNNNRTG | 1 cut(s) | 39 |
| SaqAI | TTAA | 3 cut(s) | 206, 258, 299 |
| SatI | GCNGC | 2 cut(s) | 52, 431 |
| Sau3AI | GATC | 3 cut(s) | 31, 199, 363 |
| SduI | GDGCHC | 1 cut(s) | 46 |
| SetI | ASST | 4 cut(s) | 43, 145, 423, 435 |
| SfoI | GGCGCC | 1 cut(s) | 215 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 39 |
| Sse9I | AATT | 4 cut(s) | 117, 241, 296, 400 |
| SsiI | CCGC | 1 cut(s) | 54 |
| SspDI | GGCGCC | 1 cut(s) | 213 |
| SspMI | CTAG | 1 cut(s) | 111 |
| TaqII | GACCGA | 1 cut(s) | 66 |
| TasI | AATT | 4 cut(s) | 117, 241, 296, 400 |
| TfiI | GAWTC | 1 cut(s) | 169 |
| Tru1I | TTAA | 3 cut(s) | 206, 258, 299 |
| Tru9I | TTAA | 3 cut(s) | 206, 258, 299 |
| TseI | GCWGC | 2 cut(s) | 51, 430 |
| TspDTI | ATGAA | 3 cut(s) | 184, 192, 392 |
| TspGWI | ACGGA | 1 cut(s) | 192 |
| VneI | GTGCAC | 1 cut(s) | 42 |
| VspI | ATTAAT | 1 cut(s) | 299 |
| XapI | RAATTY | 3 cut(s) | 117, 241, 400 |
| XspI | CTAG | 1 cut(s) | 111 |