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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 674 |
| AccII | CGCG | 1 cut(s) | 225 |
| AciI | CCGC | 1 cut(s) | 242 |
| AclI | AACGTT | 1 cut(s) | 521 |
| AclWI | GGATC | 1 cut(s) | 8 |
| AcoI | YGGCCR | 1 cut(s) | 243 |
| AcuI | CTGAAG | 1 cut(s) | 782 |
| AdeI | CACNNNGTG | 1 cut(s) | 650 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 379, 969 |
| AflIII | ACRYGT | 1 cut(s) | 304 |
| AgsI | TTSAA | 5 cut(s) | 140, 485, 571, 583, 1009 |
| AjnI | CCWGG | 1 cut(s) | 245 |
| AleI | CACNNNNGTG | 1 cut(s) | 908 |
| AluBI | AGCT | 8 cut(s) | 20, 105, 511, 692, 928, 969, 997, 1022 |
| AluI | AGCT | 8 cut(s) | 20, 105, 511, 692, 928, 969, 997, 1022 |
| Alw21I | GWGCWC | 1 cut(s) | 930 |
| Alw26I | GTCTC | 3 cut(s) | 230, 342, 422 |
| AlwI | GGATC | 1 cut(s) | 8 |
| AoxI | GGCC | 3 cut(s) | 243, 449, 959 |
| AspA2I | CCTAGG | 1 cut(s) | 547 |
| AspLEI | GCGC | 1 cut(s) | 225 |
| AspS9I | GGNCC | 2 cut(s) | 656, 960 |
| AsuHPI | GGTGA | 4 cut(s) | 730, 800, 853, 922 |
| AsuNHI | GCTAGC | 1 cut(s) | 688 |
| AvaII | GGWCC | 1 cut(s) | 656 |
| AvrII | CCTAGG | 1 cut(s) | 547 |
| BanI | GGYRCC | 1 cut(s) | 674 |
| BanII | GRGCYC | 1 cut(s) | 930 |
| BbsI | GAAGAC | 1 cut(s) | 567 |
| Bbv12I | GWGCWC | 1 cut(s) | 930 |
| BccI | CCATC | 4 cut(s) | 65, 520, 728, 838 |
| BciT130I | CCWGG | 1 cut(s) | 247 |
| BclI | TGATCA | 1 cut(s) | 195 |
| BcoDI | GTCTC | 3 cut(s) | 230, 342, 422 |
| BfaI | CTAG | 2 cut(s) | 548, 689 |
| BfmI | CTRYAG | 1 cut(s) | 964 |
| BisI | GCNGC | 1 cut(s) | 243 |
| BlnI | CCTAGG | 1 cut(s) | 547 |
| BlsI | GCNGC | 1 cut(s) | 244 |
| Bme1390I | CCNGG | 1 cut(s) | 247 |
| Bme18I | GGWCC | 1 cut(s) | 656 |
| BmgT120I | GGNCC | 2 cut(s) | 656, 960 |
| BmiI | GGNNCC | 3 cut(s) | 384, 658, 676 |
| BmrFI | CCNGG | 1 cut(s) | 247 |
| BmrI | ACTGGG | 1 cut(s) | 187 |
| BmsI | GCATC | 1 cut(s) | 658 |
| BmtI | GCTAGC | 1 cut(s) | 692 |
| BmuI | ACTGGG | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 567 |
| BpuEI | CTTGAG | 2 cut(s) | 480, 678 |
| BsaAI | YACGTR | 1 cut(s) | 305 |
| BsaJI | CCNNGG | 2 cut(s) | 202, 547 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 419, 449 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 379, 969 |
| Bse1I | ACTGG | 4 cut(s) | 182, 219, 356, 594 |
| Bse3DI | GCAATG | 1 cut(s) | 169 |
| BseBI | CCWGG | 1 cut(s) | 247 |
| BseDI | CCNNGG | 2 cut(s) | 202, 547 |
| BseGI | GGATG | 4 cut(s) | 24, 301, 673, 1029 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 379, 969 |
| BseMI | GCAATG | 1 cut(s) | 169 |
| BseMII | CTCAG | 7 cut(s) | 318, 399, 444, 650, 867, 1003, 1012 |
| BseNI | ACTGG | 4 cut(s) | 182, 219, 356, 594 |
| BseRI | GAGGAG | 4 cut(s) | 287, 391, 395, 938 |
| BseYI | CCCAGC | 2 cut(s) | 892, 969 |
| Bsh1236I | CGCG | 1 cut(s) | 225 |
| BshFI | GGCC | 3 cut(s) | 245, 451, 961 |
| BshNI | GGYRCC | 1 cut(s) | 674 |
| BsiHKAI | GWGCWC | 1 cut(s) | 930 |
| BslFI | GGGAC | 2 cut(s) | 543, 642 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 379, 969 |
| BsmAI | GTCTC | 3 cut(s) | 230, 342, 422 |
| BsmFI | GGGAC | 2 cut(s) | 543, 642 |
| BsnI | GGCC | 3 cut(s) | 245, 451, 961 |
| Bsp1286I | GDGCHC | 1 cut(s) | 930 |
| Bsp143I | GATC | 2 cut(s) | 13, 195 |
| Bsp19I | CCATGG | 1 cut(s) | 202 |
| BspACI | CCGC | 1 cut(s) | 242 |
| BspANI | GGCC | 3 cut(s) | 245, 451, 961 |
| BspCNI | CTCAG | 7 cut(s) | 319, 400, 445, 649, 866, 1002, 1011 |
| BspFNI | CGCG | 1 cut(s) | 225 |
| BspLI | GGNNCC | 3 cut(s) | 384, 658, 676 |
| BspOI | GCTAGC | 1 cut(s) | 692 |
| BspPI | GGATC | 1 cut(s) | 8 |
| BspT107I | GGYRCC | 1 cut(s) | 674 |
| BsrDI | GCAATG | 1 cut(s) | 169 |
| BsrI | ACTGG | 4 cut(s) | 182, 219, 356, 594 |
| BssECI | CCNNGG | 2 cut(s) | 202, 547 |
| BssMI | GATC | 2 cut(s) | 13, 195 |
| BssT1I | CCWWGG | 2 cut(s) | 202, 547 |
| Bst2UI | CCWGG | 1 cut(s) | 247 |
| Bst4CI | ACNGT | 2 cut(s) | 435, 685 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 168 |
| BstBAI | YACGTR | 1 cut(s) | 305 |
| BstC8I | GCNNGC | 3 cut(s) | 169, 554, 690 |
| BstDEI | CTNAG | 7 cut(s) | 327, 408, 453, 636, 853, 989, 998 |
| BstDSI | CCRYGG | 1 cut(s) | 202 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 377 |
| BstF5I | GGATG | 4 cut(s) | 24, 301, 673, 1029 |
| BstFNI | CGCG | 1 cut(s) | 225 |
| BstHHI | GCGC | 1 cut(s) | 225 |
| BstKTI | GATC | 2 cut(s) | 16, 198 |
| BstMAI | GTCTC | 3 cut(s) | 230, 342, 422 |
| BstMBI | GATC | 2 cut(s) | 13, 195 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 168 |
| BstNI | CCWGG | 1 cut(s) | 247 |
| BstNSI | RCATGY | 1 cut(s) | 171 |
| BstSCI | CCNGG | 1 cut(s) | 245 |
| BstSFI | CTRYAG | 1 cut(s) | 964 |
| BstUI | CGCG | 1 cut(s) | 225 |
| BstV2I | GAAGAC | 1 cut(s) | 567 |
| BsuRI | GGCC | 3 cut(s) | 245, 451, 961 |
| BtgI | CCRYGG | 1 cut(s) | 202 |
| BtsCI | GGATG | 4 cut(s) | 24, 301, 673, 1029 |
| BtsIMutI | CAGTG | 3 cut(s) | 212, 324, 440 |
| Cac8I | GCNNGC | 3 cut(s) | 169, 554, 690 |
| CfoI | GCGC | 1 cut(s) | 225 |
| Cfr13I | GGNCC | 2 cut(s) | 656, 960 |
| CviAII | CATG | 2 cut(s) | 168, 203 |
| DdeI | CTNAG | 7 cut(s) | 327, 408, 453, 636, 853, 989, 998 |
| DpnI | GATC | 2 cut(s) | 15, 197 |
| DpnII | GATC | 2 cut(s) | 13, 195 |
| DraIII | CACNNNGTG | 1 cut(s) | 650 |
| EaeI | YGGCCR | 1 cut(s) | 243 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Ecl136II | GAGCTC | 1 cut(s) | 928 |
| Eco130I | CCWWGG | 2 cut(s) | 202, 547 |
| Eco24I | GRGCYC | 1 cut(s) | 930 |
| Eco47I | GGWCC | 1 cut(s) | 656 |
| Eco53kI | GAGCTC | 1 cut(s) | 928 |
| Eco57I | CTGAAG | 1 cut(s) | 782 |
| EcoICRI | GAGCTC | 1 cut(s) | 928 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 377 |
| EcoO109I | RGGNCCY | 1 cut(s) | 960 |
| EcoRII | CCWGG | 1 cut(s) | 245 |
| EcoT14I | CCWWGG | 2 cut(s) | 202, 547 |
| EcoT22I | ATGCAT | 1 cut(s) | 169 |
| EcoT38I | GRGCYC | 1 cut(s) | 930 |
| ErhI | CCWWGG | 2 cut(s) | 202, 547 |
| FaeI | CATG | 2 cut(s) | 171, 206 |
| FaqI | GGGAC | 2 cut(s) | 543, 642 |
| FatI | CATG | 2 cut(s) | 167, 202 |
| FbaI | TGATCA | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 243 |
| FokI | GGATG | 4 cut(s) | 11, 308, 680, 1016 |
| FriOI | GRGCYC | 1 cut(s) | 930 |
| Fsp4HI | GCNGC | 1 cut(s) | 243 |
| FspBI | CTAG | 2 cut(s) | 548, 689 |
| GlaI | GCGC | 1 cut(s) | 224 |
| GluI | GCNGC | 1 cut(s) | 243 |
| GsaI | CCCAGC | 2 cut(s) | 896, 973 |
| HaeIII | GGCC | 3 cut(s) | 245, 451, 961 |
| HhaI | GCGC | 1 cut(s) | 225 |
| Hin1II | CATG | 2 cut(s) | 171, 206 |
| Hin6I | GCGC | 1 cut(s) | 223 |
| HinP1I | GCGC | 1 cut(s) | 223 |
| HinfI | GANTC | 4 cut(s) | 113, 606, 745, 985 |
| HphI | GGTGA | 4 cut(s) | 730, 800, 853, 922 |
| Hpy166II | GTNNAC | 1 cut(s) | 850 |
| Hpy188I | TCNGA | 5 cut(s) | 124, 605, 755, 856, 992 |
| Hpy188III | TCNNGA | 4 cut(s) | 464, 497, 695, 1009 |
| Hpy8I | GTNNAC | 1 cut(s) | 850 |
| HpyAV | CCTTC | 6 cut(s) | 65, 223, 349, 639, 853, 889 |
| HpyCH4III | ACNGT | 2 cut(s) | 435, 685 |
| HpyCH4IV | ACGT | 2 cut(s) | 304, 521 |
| HpyCH4V | TGCA | 4 cut(s) | 167, 171, 950, 1055 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 168 |
| HpyF3I | CTNAG | 7 cut(s) | 327, 408, 453, 636, 853, 989, 998 |
| HpySE526I | ACGT | 2 cut(s) | 304, 521 |
| Hsp92II | CATG | 2 cut(s) | 171, 206 |
| HspAI | GCGC | 1 cut(s) | 223 |
| Ksp22I | TGATCA | 1 cut(s) | 195 |
| Kzo9I | GATC | 2 cut(s) | 13, 195 |
| LmnI | GCTCC | 4 cut(s) | 110, 382, 807, 925 |
| LweI | GCATC | 1 cut(s) | 658 |
| MaeI | CTAG | 2 cut(s) | 548, 689 |
| MaeII | ACGT | 2 cut(s) | 304, 521 |
| MaeIII | GTNAC | 2 cut(s) | 314, 788 |
| MalI | GATC | 2 cut(s) | 15, 197 |
| MboI | GATC | 2 cut(s) | 13, 195 |
| MboII | GAAGA | 7 cut(s) | 178, 289, 295, 497, 572, 788, 880 |
| MhlI | GDGCHC | 1 cut(s) | 930 |
| MluCI | AATT | 3 cut(s) | 467, 534, 1003 |
| MlyI | GAGTC | 3 cut(s) | 107, 600, 979 |
| MmeI | TCCRAC | 2 cut(s) | 52, 685 |
| Mph1103I | ATGCAT | 1 cut(s) | 169 |
| MseI | TTAA | 5 cut(s) | 101, 441, 470, 680, 1060 |
| MslI | CAYNNNNRTG | 3 cut(s) | 140, 666, 908 |
| MspR9I | CCNGG | 1 cut(s) | 247 |
| MvaI | CCWGG | 1 cut(s) | 247 |
| MvnI | CGCG | 1 cut(s) | 225 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 168 |
| NcoI | CCATGG | 1 cut(s) | 202 |
| NdeII | GATC | 2 cut(s) | 13, 195 |
| NheI | GCTAGC | 1 cut(s) | 688 |
| NlaIII | CATG | 2 cut(s) | 171, 206 |
| NlaIV | GGNNCC | 3 cut(s) | 384, 658, 676 |
| NmeAIII | GCCGAG | 1 cut(s) | 286 |
| NmuCI | GTSAC | 1 cut(s) | 788 |
| NsiI | ATGCAT | 1 cut(s) | 169 |
| NspI | RCATGY | 1 cut(s) | 171 |
| OliI | CACNNNNGTG | 1 cut(s) | 908 |
| PaeI | GCATGC | 1 cut(s) | 171 |
| PfeI | GAWTC | 1 cut(s) | 745 |
| PkrI | GCNGC | 1 cut(s) | 244 |
| PleI | GAGTC | 3 cut(s) | 107, 600, 979 |
| PpsI | GAGTC | 3 cut(s) | 107, 600, 979 |
| Ppu21I | YACGTR | 1 cut(s) | 305 |
| Psp124BI | GAGCTC | 1 cut(s) | 930 |
| Psp1406I | AACGTT | 1 cut(s) | 521 |
| Psp6I | CCWGG | 1 cut(s) | 245 |
| PspFI | CCCAGC | 2 cut(s) | 892, 969 |
| PspGI | CCWGG | 1 cut(s) | 245 |
| PspN4I | GGNNCC | 3 cut(s) | 384, 658, 676 |
| PspPI | GGNCC | 2 cut(s) | 656, 960 |
| RseI | CAYNNNNRTG | 3 cut(s) | 140, 666, 908 |
| SacI | GAGCTC | 1 cut(s) | 930 |
| SaqAI | TTAA | 5 cut(s) | 101, 441, 470, 680, 1060 |
| SatI | GCNGC | 1 cut(s) | 243 |
| Sau3AI | GATC | 2 cut(s) | 13, 195 |
| Sau96I | GGNCC | 2 cut(s) | 656, 960 |
| SchI | GAGTC | 3 cut(s) | 107, 600, 979 |
| ScrFI | CCNGG | 1 cut(s) | 247 |
| SduI | GDGCHC | 1 cut(s) | 930 |
| SfaNI | GCATC | 1 cut(s) | 658 |
| SfcI | CTRYAG | 1 cut(s) | 964 |
| SinI | GGWCC | 1 cut(s) | 656 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 140, 666, 908 |
| SmlI | CTYRAG | 2 cut(s) | 495, 693 |
| SmoI | CTYRAG | 2 cut(s) | 495, 693 |
| SphI | GCATGC | 1 cut(s) | 171 |
| Sse9I | AATT | 3 cut(s) | 467, 534, 1003 |
| SsiI | CCGC | 1 cut(s) | 242 |
| SspI | AATATT | 1 cut(s) | 491 |
| SspMI | CTAG | 2 cut(s) | 548, 689 |
| SstI | GAGCTC | 1 cut(s) | 930 |
| StyD4I | CCNGG | 1 cut(s) | 245 |
| StyI | CCWWGG | 2 cut(s) | 202, 547 |
| TaaI | ACNGT | 2 cut(s) | 435, 685 |
| TaiI | ACGT | 2 cut(s) | 307, 524 |
| TaqI | TCGA | 2 cut(s) | 63, 404 |
| TasI | AATT | 3 cut(s) | 467, 534, 1003 |
| TauI | GCSGC | 1 cut(s) | 245 |
| TfiI | GAWTC | 1 cut(s) | 745 |
| Tru1I | TTAA | 5 cut(s) | 101, 441, 470, 680, 1060 |
| Tru9I | TTAA | 5 cut(s) | 101, 441, 470, 680, 1060 |
| TscAI | CASTG | 3 cut(s) | 219, 331, 440 |
| TseFI | GTSAC | 1 cut(s) | 788 |
| Tsp45I | GTSAC | 1 cut(s) | 788 |
| TspDTI | ATGAA | 2 cut(s) | 13, 312 |
| TspRI | CASTG | 3 cut(s) | 219, 331, 440 |
| VpaK11BI | GGWCC | 1 cut(s) | 656 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 377 |
| XceI | RCATGY | 1 cut(s) | 171 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 668 |
| XmaJI | CCTAGG | 1 cut(s) | 547 |
| XspI | CTAG | 2 cut(s) | 548, 689 |
| Zsp2I | ATGCAT | 1 cut(s) | 169 |